Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
ENSG00000222731	0	genome.wustl.edu	36	15	26747912	26747912	+	RNA	SNP	A	A	G			TCGA-AB-2845-03D-01W-0755-09	TCGA-AB-2845-11D-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	15	26747912	26747912	A	G	SNP	ENSG00000222731	ENST00000410799	human	ensembl	54_36p	-1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors
TET2	54790	genome.wustl.edu	36	4	106400342	106400342	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2845-03D-01W-0755-09	TCGA-AB-2845-11D-01W-0755-09	G	G			G	G	Verified	Valid	Somatic		Capture				Illumina HiSeq	4	106400342	106400342	G	0	DEL	TET2					1	known	frame_shift_del	c.327	p.K110fs	1	NULL	NULL	(deletion:cds_exon[106400225,106400375])	NA
TBC1D29	26083	genome.wustl.edu	36	17	25911260	25911260	+	Splice_Site	SNP	G	G	A			TCGA-AB-2845-03D-01W-0755-09	TCGA-AB-2845-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	17	25911260	25911260	G	A	SNP	TBC1D29	NM_015594	human	genbank	54_36p	+1	validated	splice_site	c.13-1	e2-1	0.190	-	-	-	no_errors
KRT18P28	343326	genome.wustl.edu	36	1	181195338	181195338	+	RNA	SNP	T	T	C			TCGA-AB-2845-03D-01W-0755-09	TCGA-AB-2845-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	1	181195338	181195338	T	C	SNP	KRT18P28	XR_017689	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
EPHA2	1969	genome.wustl.edu	36	1	16347846	16347846	+	Missense_Mutation	SNP	G	G	A	rs1884660	byCluster;byFrequency;by2Hit2Allele;by1000genomes;bySubmitter	TCGA-AB-2845-03D-01W-0755-09	TCGA-AB-2845-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	1	16347846	16347846	G	A	SNP	EPHA2	NM_004431	human	genbank	54_36p	-1	reviewed	missense	c.437	p.A146V	1.000	superfamily_Gal_bind_like,HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd	superfamily_Gal_bind_like,HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Grow_fac_recept,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1	-	no_errors
LOC442132	442132	genome.wustl.edu	36	5	7353327	7353327	+	RNA	SNP	G	G	A			TCGA-AB-2845-03D-01W-0755-09	TCGA-AB-2845-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	5	7353327	7353327	G	A	SNP	LOC442132	XR_040018	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.184	-	-	-	no_errors
ENSG00000211459	0	genome.wustl.edu	36	MT	1149	1149	+	RNA	SNP	G	G	A			TCGA-AB-2845-03D-01W-0755-09	TCGA-AB-2845-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	MT	1149	1149	G	A	SNP	ENSG00000211459	ENST00000389680	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
CEBPA	1050	genome.wustl.edu	36	19	38484230	38484231	+	In_Frame_Ins	INS	-	-	CGGGTTCTGCTT			TCGA-AB-2845-03D-01W-0755-09	TCGA-AB-2845-11D-01W-0755-09	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	19	38484230	38484231	-	CGGGTTCTGCTT	INS	CEBPA	NM_004364	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.931_930	p.310in_frame_insKQNP	1.000:1.000	HMMSmart_BRLZ,HMMPfam_bZIP_2	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2	-	no_errors
LOC728566	728566	genome.wustl.edu	36	9	66404307	66404307	+	RNA	SNP	G	G	A			TCGA-AB-2845-03D-01W-0755-09	TCGA-AB-2845-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	9	66404307	66404307	G	A	SNP	LOC728566	XR_037046	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.926	-	-	-	pseudogene
LOC642661	642661	genome.wustl.edu	36	14	18789695	18789695	+	RNA	SNP	G	G	A			TCGA-AB-2845-03D-01W-0755-09	TCGA-AB-2845-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	14	18789695	18789695	G	A	SNP	LOC642661	XR_016132	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.982	-	-	-	pseudogene
DHX34	9704	genome.wustl.edu	36	19	52562145	52562145	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2845-03D-01W-0755-09	TCGA-AB-2845-11D-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	19	52562145	52562145	A	G	SNP	DHX34	NM_014681	human	genbank	54_36p	+1	reviewed	missense	c.1666	p.T556A	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_HA2	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605,PatternScan_RUBREDOXIN	-	no_errors
KIAA1024	23251	genome.wustl.edu	36	15	77536316	77536316	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2845-03D-01W-0755-09	TCGA-AB-2845-11D-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	15	77536316	77536316	A	C	SNP	KIAA1024	NM_015206	human	genbank	54_36p	+1	validated	missense	c.772	p.N258H	1.000	NULL	HMMPfam_UPF0258	-	no_errors
CAPRIN2	65981	genome.wustl.edu	36	12	30797894	30797894	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2845-03D-01W-0755-09	TCGA-AB-2845-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	12	30797894	30797894	C	T	SNP	CAPRIN2	NM_001002259	human	genbank	54_36p	-1	validated	nonsense	c.71	p.W24*	0.015	NULL	HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q	-	no_errors
