Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
IGHM	3507	genome.wustl.edu	36	14	105278907	105278907	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	105278907	105278907	G	C	SNP	IGHM	ENST00000390548	human	ensembl	54_36p	-1	known	missense	c.940	p.L314V	0.446	superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407	superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
TET1	80312	genome.wustl.edu	36	10	70120655	70120655	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	70120655	70120655	C	T	SNP	TET1	NM_030625	human	genbank	54_36p	+1	validated	missense	c.5489	p.T1830I	0.944	NULL	HMMPfam_zf-CXXC	-	no_errors
FAM43A	131583	genome.wustl.edu	36	3	195889973	195889973	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	195889973	195889973	C	T	SNP	FAM43A	NM_153690	human	genbank	54_36p	+1	validated	missense	c.1129	p.R377W	1.000	NULL	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like	-	no_errors
PHF6	84295	genome.wustl.edu	36	X	133375569	133375570	+	Frame_Shift_Ins	INS	-	-	GGATA			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	133375569	133375570	-	GGATA	INS	PHF6	NM_001015877	human	genbank	54_36p	+1	reviewed	frame_shift_ins	c.636_637	p.F213fs	1.000:1.000	NULL	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger	-	no_errors
SAGE1	55511	genome.wustl.edu	36	X	134816810	134816810	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	134816810	134816810	G	A	SNP	SAGE1	NM_018666	human	genbank	54_36p	+1	reviewed	missense	c.796	p.D266N	0.516	NULL	NULL	-	no_errors
COG5	10466	genome.wustl.edu	36	7	106789746	106789746	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	106789746	106789746	A	-	DEL	COG5	NM_006348	human	genbank	54_36p	-1	validated	frame_shift_del	c.1087	p.S363fs	1.000	NULL	HMMPfam_COG5	-	no_errors
RPS6KB2	6199	genome.wustl.edu	36	11	66955431	66955431	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	66955431	66955431	A	G	SNP	RPS6KB2	NM_003952	human	genbank	54_36p	+1	reviewed	missense	c.326	p.N109S	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C	-	no_errors
ENSG00000209396	0	genome.wustl.edu	36	11	3669909	3669909	+	RNA	SNP	C	C	T			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	3669909	3669909	C	T	SNP	ENSG00000209396	ENST00000386661	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	0.000	-	-	-	pseudogene
C15orf43	145645	genome.wustl.edu	36	15	43041027	43041027	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	43041027	43041027	A	T	SNP	C15orf43	NM_152448	human	genbank	54_36p	+1	predicted	missense	c.301	p.I101F	1.000	NULL	NULL	-	no_errors
NCOR2	9612	genome.wustl.edu	36	12	123385997	123385997	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	123385997	123385997	G	A	SNP	NCOR2	NM_006312	human	genbank	54_36p	-1	validated	missense	c.6271	p.R2091W	0.998	NULL	superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	-	no_errors
CCDC162P	221262	genome.wustl.edu	36	6	109743314	109743314	+	Silent	SNP	A	A	G			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	109743314	109743314	A	G	SNP	C6orf184	ENST00000368966	human	ensembl	54_36p	+1	known	silent	c.1101	p.Q367	1.000	NULL	NULL	-	no_stop_codon
RPS6KB2	6199	genome.wustl.edu	36	11	66955488	66955488	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	66955488	66955488	A	G	SNP	RPS6KB2	NM_003952	human	genbank	54_36p	+1	reviewed	missense	c.383	p.H128R	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
LOC642812	642812	genome.wustl.edu	36	X	115153476	115153476	+	RNA	SNP	C	C	T			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	115153476	115153476	C	T	SNP	LOC642812	XR_036892	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
SEC16A	9919	genome.wustl.edu	36	9	138490038	138490038	+	Silent	SNP	G	G	A			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	138490038	138490038	G	A	SNP	SEC16A	NM_014866	human	genbank	54_36p	-1	validated	silent	c.1851	p.H617	0.465	NULL	NULL	-	no_errors
ENSG00000215764	0	genome.wustl.edu	36	NT_113949	66785	66785	+	Silent	SNP	C	C	T			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113949	66785	66785	C	T	SNP	ENSG00000215764	ENST00000400854	human	ensembl	54_36p	+1	known	silent	c.762	p.F254	NULL	NULL	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	-	no_errors
AKR7A3	22977	genome.wustl.edu	36	1	19487628	19487628	+	Missense_Mutation	SNP	C	C	T	rs118060916	by1000genomes	TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	19487628	19487628	C	T	SNP	AKR7A3	NM_012067	human	genbank	54_36p	-1	validated	missense	c.163	p.E55K	1.000	superfamily_Aldo/ket_red,HMMPfam_Aldo_ket_red	superfamily_Aldo/ket_red,HMMPfam_Aldo_ket_red	-	no_errors
RAG1	5896	genome.wustl.edu	36	11	36552491	36552491	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	36552491	36552491	T	G	SNP	RAG1	NM_000448	human	genbank	54_36p	+1	reviewed	missense	c.1061	p.L354R	1.000	superfamily_RING/U-box,HMMPfam_zf-RAG1	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-RAG1	-	no_errors
LOC730281	730281	genome.wustl.edu	36	7	62851162	62851162	+	RNA	SNP	G	G	C			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	62851162	62851162	G	C	SNP	LOC730281	XR_037183	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.811	-	-	-	no_errors
ENSG00000222020	0	genome.wustl.edu	36	2	239988842	239988843	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	239988842	239988843	-	G	INS	ENSG00000222020	ENST00000409526	human	ensembl	54_36p	+1	known	frame_shift_ins	c.133_134	p.C45fs	0.003:0.003	NULL	NULL	-	no_errors
ATMIN	23300	genome.wustl.edu	36	16	79627192	79627192	+	Silent	SNP	G	G	C			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	79627192	79627192	G	C	SNP	ATMIN	NM_015251	human	genbank	54_36p	+1	validated	silent	c.216	p.S72	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
SLC26A6	65010	genome.wustl.edu	36	3	48642391	48642391	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	48642391	48642391	C	A	SNP	SLC26A6	NM_022911	human	genbank	54_36p	-1	reviewed	missense	c.1447	p.A483S	0.997	HMMPfam_Sulfate_transp	PatternScan_SLC26A,HMMPfam_Sulfate_transp,superfamily_Anti-sigma factor antagonist SpoIIaa,HMMPfam_STAS	-	no_errors
RPL13AP20	387841	genome.wustl.edu	36	12	12920018	12920018	+	RNA	SNP	G	G	C			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	12920018	12920018	G	C	SNP	RPL13AP20	XR_042179	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
ANKRD18A	253650	genome.wustl.edu	36	9	38605714	38605714	+	Silent	SNP	G	G	A			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	38605714	38605714	G	A	SNP	ANKRD18A	XM_001726105	human	genbank	54_36p	-1	model	silent	c.372	p.G124	0.950	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248	-	no_errors
MUC4	4585	genome.wustl.edu	36	3	196994993	196994993	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	196994993	196994993	G	T	SNP	MUC4	ENST00000405167	human	ensembl	54_36p	-1	known	missense	c.7853	p.S2618Y	0.659	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
GSPT1	2935	genome.wustl.edu	36	16	11887890	11887890	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2855-03B-01W-0728-08	TCGA-AB-2855-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	11887890	11887890	G	A	SNP	GSPT1	NM_002094	human	genbank	54_36p	-1	validated	missense	c.778	p.P260S	1.000	superfamily_SSF52540,HMMPfam_GTP_EFTU	superfamily_SSF52540,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,HMMPfam_GTP_EFTU_D3,superfamily_Elong_init_C	-	no_errors
