Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
FKBP8	23770	genome.wustl.edu	36	19	18513593	18513593	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	19	18513593	18513593	G	A	SNP	FKBP8	NM_012181	human	genbank	54_36p	-1	reviewed	missense	c.188	p.A63V	0.000	NULL	superfamily_SSF54534,HMMPfam_FKBP_C,superfamily_SSF48452,HMMPfam_TPR_1	-	no_errors
MIR1324	100302212	genome.wustl.edu	36	3	75762683	75762683	+	RNA	SNP	C	C	T			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	3	75762683	75762683	C	T	SNP	MIRN1324	ENST00000408868	human	ensembl	54_36p	+1	known	rna	NULL	NULL	0.065	-	-	-	no_errors
GGT3P	2679	genome.wustl.edu	36	22	17158652	17158652	+	Silent	SNP	C	C	T			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	22	17158652	17158652	C	T	SNP	GGT3P	ENST00000255845	human	ensembl	54_36p	-1	known	silent	c.84	p.S28	0.000	NULL	HMMPfam_G_glu_transpept,PatternScan_G_GLU_TRANSPEPTIDASE	-	no_errors
DUX1	26584	genome.wustl.edu	36	10	135340704	135340704	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	10	135340704	135340704	A	G	SNP	DUX1	NM_012146	human	genbank	54_36p	+1	provisional	missense	c.142	p.T48A	0.012	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	-	no_stop_codon
MUC6	4588	genome.wustl.edu	36	11	1008316	1008316	+	Silent	SNP	G	G	A			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	11	1008316	1008316	G	A	SNP	MUC6	NM_005961	human	genbank	54_36p	-1	validated	silent	c.4485	p.S1495	0.398	NULL	HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,HMMSmart_SM00215,HMMPfam_C8,HMMPfam_TIL	-	no_errors
BTBD7	55727	genome.wustl.edu	36	14	92782304	92782304	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	14	92782304	92782304	C	T	SNP	BTBD7	NM_001002860	human	genbank	54_36p	-1	validated	missense	c.2203	p.V735I	0.918	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK	-	no_errors
CCDC67	159989	genome.wustl.edu	36	11	92767395	92767395	+	Silent	SNP	A	A	G			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	11	92767395	92767395	A	G	SNP	CCDC67	NM_181645	human	genbank	54_36p	+1	validated	silent	c.1164	p.T388	1.000	NULL	NULL	-	no_errors
FN1	2335	genome.wustl.edu	36	2	215946317	215946317	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	2	215946317	215946317	C	A	SNP	FN1	NM_212482	human	genbank	54_36p	-1	reviewed	nonsense	c.6220	p.E2074*	1.000	HMMSmart_SM00060,superfamily_Fibronectin type III	superfamily_Fibronectin type I module,HMMPfam_fn1,PatternScan_FN1_1,HMMSmart_SM00058,PatternScan_EGF_1,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors
ENSG00000214135	0	genome.wustl.edu	36	3	196875734	196875734	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	3	196875734	196875734	A	G	SNP	ENSG00000214135	ENST00000397590	human	ensembl	54_36p	+1	known	missense	c.194	p.Y65C	1.000	superfamily_SSF51905,HMMPfam_FAD_binding_2	superfamily_SSF51905,HMMPfam_FAD_binding_2,superfamily_SSF56425,superfamily_Succ_DH_flav_C,HMMPfam_Succ_DH_flav_C	-	no_start_codon:no_stop_codon
SLCO3A1	28232	genome.wustl.edu	36	15	90472624	90472624	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	15	90472624	90472624	C	G	SNP	SLCO3A1	NM_013272	human	genbank	54_36p	+1	validated	missense	c.1413	p.C471W	1.000	superfamily_MFS general substrate transporter,HMMPfam_OATP,superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2	superfamily_MFS general substrate transporter,HMMPfam_OATP,superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2	-	no_errors
GPRC5B	51704	genome.wustl.edu	36	16	19790845	19790845	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	16	19790845	19790845	G	A	SNP	GPRC5B	NM_016235	human	genbank	54_36p	-1	reviewed	missense	c.824	p.T275M	1.000	HMMPfam_7tm_3	PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,HMMPfam_7tm_3	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25310746	25310746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	C	C			C	C	Verified	Valid	Somatic		Capture				Illumina HiSeq	2	25310746	25310746	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2645	p.R882H	1	NULL	HMMPfam_PWWP;HMMPfam_DNA_methylase;superfamily_FYVE/PHD zinc finger;superfamily_S-adenosyl-L-methionine-dependent methyltransferases;superfamily_Tudor/PWWP/MBT	-	NA
KIF2B	84643	genome.wustl.edu	36	17	49257044	49257044	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	17	49257044	49257044	C	A	SNP	KIF2B	NM_032559	human	genbank	54_36p	+1	validated	missense	c.1651	p.H551N	0.001	NULL	HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
AMDHD2	51005	genome.wustl.edu	36	16	2518138	2518138	+	Silent	SNP	C	C	T			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	16	2518138	2518138	C	T	SNP	AMDHD2	NM_015944	human	genbank	54_36p	+1	validated	silent	c.705	p.N235	0.964	superfamily_Metalo_hydrolase,superfamily_SSF51556	superfamily_Metalo_hydrolase,HMMPfam_Amidohydro_1,superfamily_SSF51556,PatternScan_SPASE_I_1	-	no_errors
MCHR2	84539	genome.wustl.edu	36	6	100497679	100497679	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	6	100497679	100497679	G	A	SNP	MCHR2	NM_001040179	human	genbank	54_36p	-1	validated	missense	c.454	p.R152W	0.979	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
LOC644525	644525	genome.wustl.edu	36	22	14464744	14464744	+	Silent	SNP	T	T	C			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	22	14464744	14464744	T	C	SNP	LOC644525	XM_927654	human	genbank	54_36p	-1	model	silent	c.111	p.P37	0.008	NULL	NULL	-	no_errors
IDH1	3417	genome.wustl.edu	36	2	208821358	208821358	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	2	208821358	208821358	G	A	SNP	IDH1	NM_005896	human	genbank	54_36p	-1	reviewed	missense	c.394	p.R132C	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
USP17	391627	genome.wustl.edu	36	4	8970150	8970150	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	4	8970150	8970150	T	C	SNP	USP17	NM_001105662	human	genbank	54_36p	+1	provisional	missense	c.944	p.L315P	0.002	superfamily_Cysteine proteinases,HMMPfam_UCH	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	pseudogene
RNF213	57674	genome.wustl.edu	36	17	75935198	75935198	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	17	75935198	75935198	G	A	SNP	RNF213	NM_020914	human	genbank	54_36p	+1	validated	missense	c.2687	p.R896Q	0.996	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors
SMAD9	4093	genome.wustl.edu	36	13	36344969	36344969	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	13	36344969	36344969	G	A	SNP	SMAD9	NM_005905	human	genbank	54_36p	-1	validated	missense	c.496	p.H166Y	1.000	NULL	superfamily_SMAD MH1 domain,HMMSmart_SM00523,HMMPfam_MH1,superfamily_SMAD/FHA domain,HMMPfam_MH2,HMMSmart_SM00524	-	no_errors
ZMYND10	51364	genome.wustl.edu	36	3	50355818	50355818	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	3	50355818	50355818	A	C	SNP	ZMYND10	NM_015896	human	genbank	54_36p	-1	validated	missense	c.434	p.L145R	1.000	NULL	HMMPfam_zf-MYND,PatternScan_ZF_MYND_1	-	no_errors
FAM90A1	55138	genome.wustl.edu	36	12	8268621	8268621	+	Silent	SNP	C	C	T			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	12	8268621	8268621	C	T	SNP	FAM90A1	NM_018088	human	genbank	54_36p	-1	validated	silent	c.75	p.R25	0.001	NULL	NULL	-	no_errors
HCLS1	3059	genome.wustl.edu	36	3	122859868	122859868	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	3	122859868	122859868	A	C	SNP	HCLS1	NM_005335	human	genbank	54_36p	-1	validated	missense	c.17	p.V6G	1.000	NULL	HMMPfam_HS1_rep,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
METTL11A	28989	genome.wustl.edu	36	9	131436230	131436230	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	9	131436230	131436230	T	C	SNP	METTL11A	NM_014064	human	genbank	54_36p	+1	validated	missense	c.239	p.L80P	0.998	HMMPfam_DUF858,superfamily_SSF53335	HMMPfam_DUF858,superfamily_SSF53335	-	no_errors
MTA2	9219	genome.wustl.edu	36	11	62120719	62120719	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	11	62120719	62120719	T	C	SNP	MTA2	NM_004739	human	genbank	54_36p	-1	reviewed	missense	c.848	p.Y283C	1.000	HMMSmart_SANT,HMMPfam_Myb_DNA-binding	HMMPfam_GATA,HMMSmart_ZnF_GATA,PatternScan_GATA_ZN_FINGER_1,HMMPfam_ELM2,HMMSmart_SANT,HMMPfam_BAH,HMMSmart_BAH,HMMPfam_Myb_DNA-binding,superfamily_SSF57716	-	no_errors
FN1	2335	genome.wustl.edu	36	2	215957122	215957122	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	2	215957122	215957122	A	G	SNP	FN1	NM_212482	human	genbank	54_36p	-1	reviewed	missense	c.4760	p.V1587A	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_fn1,HMMSmart_SM00058,PatternScan_FN1_1,HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_EGF_1,superfamily_Kringle-like,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_Fibronectin type I module	-	no_errors
EGFR	1956	genome.wustl.edu	36	7	55240593	55240593	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	7	55240593	55240593	C	G	SNP	EGFR	NM_005228	human	genbank	54_36p	+1	reviewed	missense	c.3422	p.T1141S	0.763	NULL	HMMPfam_Recep_L_domain,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Furin-like,HMMSmart_SM00261,PatternScan_PROTEIN_KINASE_TYR,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,superfamily_L domain-like	-	no_errors
NCF1C	654817	genome.wustl.edu	36	7	74220328	74220328	+	Silent	SNP	A	A	G			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	7	74220328	74220328	A	G	SNP	NCF1C	ENST00000297905	human	ensembl	54_36p	-1	known	silent	c.345	p.L115	0.036	superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312	superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_p47_phox_C	-	no_errors
FAM176A	84141	genome.wustl.edu	36	2	75574230	75574230	+	Silent	SNP	T	T	C			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	2	75574230	75574230	T	C	SNP	FAM176A	NM_032181	human	genbank	54_36p	-1	validated	silent	c.99	p.R33	0.991	NULL	NULL	-	no_errors
RAB11FIP1	80223	genome.wustl.edu	36	8	37851570	37851570	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2863-03D-01W-0755-09	TCGA-AB-2863-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	8	37851570	37851570	C	T	SNP	RAB11FIP1	NM_001002814	human	genbank	54_36p	-1	validated	missense	c.1243	p.A415T	0.003	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_RBD-FIP	-	no_errors
