Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
ENSG00000111788	0	genome.wustl.edu	36	12	9355445	9355445	+	Silent	SNP	G	G	A			TCGA-AB-2866-03B-01W-0728-08	TCGA-AB-2866-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	9355445	9355445	G	A	SNP	ENSG00000111788	ENST00000341155	human	ensembl	54_36p	+1	known	silent	c.2238	p.V746	1.000	HMMSmart_HELICc2	HMMSmart_DEXDc2,HMMSmart_HELICc2,HMMPfam_DEAD_2,superfamily_SSF52540	-	no_errors
LOC100134184	100134184	genome.wustl.edu	36	1	4540	4540	+	Silent	SNP	G	G	A			TCGA-AB-2866-03B-01W-0728-08	TCGA-AB-2866-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	4540	4540	G	A	SNP	LOC100134184	XM_001717138	human	genbank	54_36p	+1	model	silent	c.921	p.G307	0.020	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
ASPN	54829	genome.wustl.edu	36	9	94276845	94276846	+	In_Frame_Ins	INS	-	-	TCA			TCGA-AB-2866-03B-01W-0728-08	TCGA-AB-2866-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	94276845	94276846	-	TCA	INS	ASPN	NM_017680	human	genbank	54_36p	-1	validated	in_frame_ins	c.156_155	p.52in_frame_insD	0.925:0.928	superfamily_SSF52058	superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1	-	no_errors
ITPKA	3706	genome.wustl.edu	36	15	39582346	39582346	+	Silent	SNP	C	C	T			TCGA-AB-2866-03B-01W-0728-08	TCGA-AB-2866-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	39582346	39582346	C	T	SNP	ITPKA	NM_002220	human	genbank	54_36p	+1	reviewed	silent	c.1179	p.H393	0.990	HMMPfam_IPK,superfamily_SSF56104	HMMPfam_IPK,superfamily_SSF56104	-	no_errors
TMEM120A	83862	genome.wustl.edu	36	7	75459511	75459511	+	Silent	SNP	G	G	A			TCGA-AB-2866-03B-01W-0728-08	TCGA-AB-2866-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	75459511	75459511	G	A	SNP	TMEM120A	NM_031925	human	genbank	54_36p	-1	validated	silent	c.204	p.C68	0.997	HMMPfam_TMPIT	HMMPfam_TMPIT	-	pseudogene
KIF1A	547	genome.wustl.edu	36	2	241376300	241376300	+	Silent	SNP	C	C	A			TCGA-AB-2866-03B-01W-0728-08	TCGA-AB-2866-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	241376300	241376300	C	A	SNP	KIF1A	NM_004321	human	genbank	54_36p	-1	reviewed	silent	c.204	p.A68	0.333	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
LOC729023	729023	genome.wustl.edu	36	10	52112747	52112747	+	RNA	SNP	A	A	G			TCGA-AB-2866-03B-01W-0728-08	TCGA-AB-2866-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	52112747	52112747	A	G	SNP	LOC729023	XR_038278	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.036	-	-	-	pseudogene
MTCP1NB	100272147	genome.wustl.edu	36	X	153945504	153945504	+	Splice_Site	SNP	T	T	A			TCGA-AB-2866-03B-01W-0728-08	TCGA-AB-2866-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	153945504	153945504	T	A	SNP	MTCP1NB	ENST00000330425	human	ensembl	54_36p	-1	known	splice_site	c.324-2	e4-2	1.000	-	-	-	no_errors
EPHA10	284656	genome.wustl.edu	36	1	38000057	38000057	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2866-03B-01W-0728-08	TCGA-AB-2866-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	38000057	38000057	C	T	SNP	EPHA10	NM_001099439	human	genbank	54_36p	-1	validated	missense	c.457	p.D153N	0.999	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,HMMPfam_SAM_1,HMMSmart_SM00454,HMMSmart_SM00220,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Galactose-binding domain-like,superfamily_SAM/Pointed domain,superfamily_Protein kinase-like (PK-like),PatternScan_EGF_2	-	no_errors
CHDH	55349	genome.wustl.edu	36	3	53828082	53828082	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2866-03B-01W-0728-08	TCGA-AB-2866-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	53828082	53828082	G	A	SNP	CHDH	NM_018397	human	genbank	54_36p	-1	validated	missense	c.1289	p.T430M	0.999	superfamily_SSF51905,superfamily_SSF54373,HMMPfam_GMC_oxred_C	superfamily_SSF51905,HMMPfam_GMC_oxred_N,PatternScan_GMC_OXRED_1,PatternScan_GMC_OXRED_2,superfamily_SSF54373,HMMPfam_GMC_oxred_C	-	no_errors
ZNF806	646915	genome.wustl.edu	36	2	132792374	132792375	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AB-2866-03B-01W-0728-08	TCGA-AB-2866-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	132792374	132792375	-	A	INS	ZNF806	XM_001724242	human	genbank	54_36p	+1	model	frame_shift_ins	c.1365_1366	p.N455fs	0.061:0.052	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
ZNF806	646915	genome.wustl.edu	36	2	132792588	132792588	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AB-2866-03B-01W-0728-08	TCGA-AB-2866-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	132792588	132792588	A	-	DEL	ZNF806	XM_001724242	human	genbank	54_36p	+1	model	frame_shift_del	c.1579	p.N527fs	0.008	NULL	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
