Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
HLA-B	3106	genome.wustl.edu	36	6	31432896	31432896	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2888-03A-01W-0732-08	TCGA-AB-2888-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	31432896	31432896	G	C	SNP	HLA-B	NM_005514	human	genbank	54_36p	-1	reviewed	missense	c.19	p.R7G	0.000	NULL	HMMPfam_MHC_I,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,HMMPfam_MHC_I_C,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin	-	no_errors
GPR183	1880	genome.wustl.edu	36	13	98745483	98745483	+	Silent	SNP	A	A	G			TCGA-AB-2888-03A-01W-0732-08	TCGA-AB-2888-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	98745483	98745483	A	G	SNP	GPR183	NM_004951	human	genbank	54_36p	-1	reviewed	silent	c.918	p.F306	0.972	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
KIT	3815	genome.wustl.edu	36	4	55284528	55284529	+	In_Frame_Ins	INS	-	-	CTTCTT			TCGA-AB-2888-03A-01W-0732-08	TCGA-AB-2888-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	55284528	55284529	-	CTTCTT	INS	KIT	NM_000222	human	genbank	54_36p	+1	reviewed	in_frame_ins	c.1253_1254	p.419in_frame_insFF	0.002:0.002	NULL	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_IGc2,HMMSmart_IG,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
LOC388076	388076	genome.wustl.edu	36	15	19941872	19941872	+	Silent	SNP	G	G	A			TCGA-AB-2888-03A-01W-0732-08	TCGA-AB-2888-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	19941872	19941872	G	A	SNP	LOC388076	XM_931016	human	genbank	54_36p	-1	model	silent	c.339	p.Y113	1.000	HMMPfam_Ribosomal_S8e	HMMPfam_Ribosomal_S8e	-	pseudogene
FAM47B	170062	genome.wustl.edu	36	X	34872429	34872429	+	Silent	SNP	C	C	T			TCGA-AB-2888-03A-01W-0732-08	TCGA-AB-2888-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	34872429	34872429	C	T	SNP	FAM47B	NM_152631	human	genbank	54_36p	+1	predicted	silent	c.1560	p.V520	0.000	NULL	NULL	-	no_errors
PSMD5	5711	genome.wustl.edu	36	9	122626622	122626622	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2888-03A-01W-0732-08	TCGA-AB-2888-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	122626622	122626622	A	G	SNP	PSMD5	NM_005047	human	genbank	54_36p	-1	reviewed	missense	c.977	p.V326A	1.000	HMMPfam_Proteasom_PSMB,superfamily_ARM-type_fold	HMMPfam_Proteasom_PSMB,superfamily_ARM-type_fold	-	no_errors
ARHGAP18	93663	genome.wustl.edu	36	6	129992243	129992246	+	Frame_Shift_Del	DEL	TCTT	TCTT	-			TCGA-AB-2888-03A-01W-0732-08	TCGA-AB-2888-11A-01W-0732-08	TCTT	TCTT			TCTT	TCTT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	129992243	129992246	TCTT	-	DEL	ARHGAP18	NM_033515	human	genbank	54_36p	-1	validated	frame_shift_del	c.734_731	p.K244fs	0.979:0.998:1.000:1.000	NULL	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179297088	179297088	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2888-03A-01W-0732-08	TCGA-AB-2888-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	179297088	179297088	C	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.17411	p.R5804Q	1.000	superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Protein kinase-like (PK-like),superfamily_WD40 repeat-like,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	-	no_errors
CPNE3	8895	genome.wustl.edu	36	8	87626150	87626150	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2888-03A-01W-0732-08	TCGA-AB-2888-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	87626150	87626150	A	G	SNP	CPNE3	NM_003909	human	genbank	54_36p	+1	reviewed	missense	c.700	p.T234A	1.000	superfamily_C2_CaLB,HMMSmart_C2	HMMSmart_C2,HMMPfam_C2,superfamily_C2_CaLB,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_Copine	-	no_errors
DDX23	9416	genome.wustl.edu	36	12	47525672	47525672	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2888-03A-01W-0732-08	TCGA-AB-2888-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	47525672	47525672	C	T	SNP	DDX23	NM_004818	human	genbank	54_36p	-1	reviewed	missense	c.161	p.R54Q	0.853	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors
BRMS1	25855	genome.wustl.edu	36	11	65865367	65865367	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2888-03A-01W-0732-08	TCGA-AB-2888-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	65865367	65865367	G	A	SNP	BRMS1	NM_001024957	human	genbank	54_36p	-1	reviewed	nonsense	c.244	p.R82*	1.000	HMMPfam_Sds3	HMMPfam_Sds3	-	no_errors
ASB15	142685	genome.wustl.edu	36	7	123056342	123056342	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2888-03A-01W-0732-08	TCGA-AB-2888-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	123056342	123056342	C	T	SNP	ASB15	NM_080928	human	genbank	54_36p	+1	validated	missense	c.1058	p.A353V	0.997	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,HMMSmart_SM00253,HMMPfam_SOCS_box	-	no_errors
