Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
GAS7	8522	genome.wustl.edu	36	17	9770743	9770743	+	Silent	SNP	G	G	A			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	9770743	9770743	G	A	SNP	GAS7	NM_201433	human	genbank	54_36p	-1	reviewed	silent	c.954	p.C318	0.891	NULL	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,HMMPfam_FCH,HMMSmart_SM00055	-	no_errors
SH3TC2	79628	genome.wustl.edu	36	5	148386346	148386346	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	148386346	148386346	C	T	SNP	SH3TC2	NM_024577	human	genbank	54_36p	-1	reviewed	missense	c.3035	p.R1012Q	0.998	superfamily_TPR-like	superfamily_SH3-domain,HMMPfam_SH3_2,HMMPfam_SH3_1,HMMSmart_SM00326,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27506218	27506219	+	In_Frame_Ins	INS	-	-	CAAACTCTAAATTTTCTCTTGGAAACTCCCATTTGAGATCATATT			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	-	-			-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	13	27506218	27506219	-	caaactctaaattttctcttggaaactcccatttgagatcatatt	INS	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	splice_site_ins	c.NULL-spans-splice-site	ITD	1.000:1.000	-	-	NA	NA
CYP21A2	1589	genome.wustl.edu	36	6	32114865	32114865	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	32114865	32114865	G	A	SNP	CYP21A2	NM_000500	human	genbank	54_36p	+1	reviewed	missense	c.308	p.R103K	0.003	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
LOC100132306	100132306	genome.wustl.edu	36	1	147914910	147914920	+	RNA	DEL	AGTTCTAAACA	AGTTCTAAACA	-			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	AGTTCTAAACA	AGTTCTAAACA			AGTTCTAAACA	AGTTCTAAACA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	147914910	147914920	AGTTCTAAACA	-	DEL	LOC100132306	XR_037921	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000	-	-	-	pseudogene
ALDH16A1	126133	genome.wustl.edu	36	19	54657704	54657704	+	Silent	SNP	G	G	A			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	54657704	54657704	G	A	SNP	ALDH16A1	NM_153329	human	genbank	54_36p	+1	validated	silent	c.978	p.R326	0.406	superfamily_ALDH-like,HMMPfam_Aldedh	superfamily_ALDH-like,HMMPfam_Aldedh	-	no_errors
TYRO3	7301	genome.wustl.edu	36	15	39644599	39644599	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	39644599	39644599	G	A	SNP	TYRO3	NM_006293	human	genbank	54_36p	+1	provisional	missense	c.751	p.G251S	0.942	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
GUCY2D	3000	genome.wustl.edu	36	17	7857964	7857964	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	7857964	7857964	C	T	SNP	GUCY2D	NM_000180	human	genbank	54_36p	+1	reviewed	missense	c.2305	p.P769S	1.000	superfamily_Kinase_like,HMMPfam_Pkinase	superfamily_SSF53822,HMMPfam_ANF_receptor,superfamily_Kinase_like,HMMPfam_Pkinase,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
FREM2	341640	genome.wustl.edu	36	13	38328294	38328294	+	Silent	SNP	C	C	T			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	38328294	38328294	C	T	SNP	FREM2	NM_207361	human	genbank	54_36p	+1	reviewed	silent	c.6957	p.H2319	0.028	HMMPfam_Calx-beta,HMMSmart_SM00237	HMMPfam_Calx-beta,HMMSmart_SM00237	-	no_errors
TSKU	25987	genome.wustl.edu	36	11	76184545	76184545	+	Silent	SNP	G	G	A			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	76184545	76184545	G	A	SNP	TSKU	NM_015516	human	genbank	54_36p	+1	validated	silent	c.237	p.A79	0.722	superfamily_SSF52047	superfamily_SSF52047,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP	-	no_errors
MED24	9862	genome.wustl.edu	36	17	35443150	35443150	+	Silent	SNP	G	G	T			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	35443150	35443150	G	T	SNP	MED24	NM_014815	human	genbank	54_36p	-1	reviewed	silent	c.645	p.A215	0.346	NULL	NULL	-	no_errors
LDLRAD3	143458	genome.wustl.edu	36	11	36207460	36207460	+	Silent	SNP	C	C	T			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	36207460	36207460	C	T	SNP	LDLRAD3	NM_174902	human	genbank	54_36p	+1	provisional	silent	c.975	p.G325	0.060	NULL	superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	-	-			-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
DCAF8	50717	genome.wustl.edu	36	1	158476620	158476620	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	158476620	158476620	A	G	SNP	WDR42A	NM_015726	human	genbank	54_36p	-1	reviewed	missense	c.214	p.S72P	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
TBX18	9096	genome.wustl.edu	36	6	85510728	85510728	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	85510728	85510728	G	A	SNP	TBX18	NM_001080508	human	genbank	54_36p	-1	provisional	missense	c.974	p.A325V	1.000	superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box	superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2	-	no_errors
PRDM16	63976	genome.wustl.edu	36	1	3318383	3318383	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	3318383	3318383	G	A	SNP	PRDM16	NM_022114	human	genbank	54_36p	+1	reviewed	missense	c.1762	p.V588M	0.001	NULL	superfamily_SET domain,HMMSmart_SM00317,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
MYH2	4620	genome.wustl.edu	36	17	10383388	10383388	+	Silent	SNP	G	G	A			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	10383388	10383388	G	A	SNP	MYH2	NM_001100112	human	genbank	54_36p	-1	validated	silent	c.1275	p.N425	0.003	superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors
ADCY10	55811	genome.wustl.edu	36	1	166081666	166081666	+	Silent	SNP	C	C	T			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	166081666	166081666	C	T	SNP	ADCY10	NM_018417	human	genbank	54_36p	-1	validated	silent	c.2766	p.E922	0.137	NULL	superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,superfamily_TPR-like	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25310746	25310746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25310746	25310746	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2645	p.R882H	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
ATP10B	23120	genome.wustl.edu	36	5	160045718	160045718	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	160045718	160045718	T	C	SNP	ATP10B	NM_025153	human	genbank	54_36p	-1	validated	missense	c.416	p.K139R	0.985	HMMPfam_E1-E2_ATPase	HMMPfam_E1-E2_ATPase,HMMPfam_Hydrolase_3,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors
CAND1	55832	genome.wustl.edu	36	12	65986521	65986521	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	65986521	65986521	T	G	SNP	CAND1	NM_018448	human	genbank	54_36p	+1	validated	missense	c.2806	p.L936V	0.998	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_TIP120	-	no_errors
DOCK2	1794	genome.wustl.edu	36	5	169058032	169058032	+	Splice_Site	SNP	G	G	A			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	169058032	169058032	G	A	SNP	DOCK2	NM_004946	human	genbank	54_36p	+1	validated	splice_site	c.1055+1	e11+1	1.000	-	-	-	no_errors
DHX32	55760	genome.wustl.edu	36	10	127559142	127559142	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	127559142	127559142	A	G	SNP	DHX32	NM_018180	human	genbank	54_36p	-1	reviewed	missense	c.242	p.V81A	0.861	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_HA2,HMMPfam_DUF1605	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27506220	27506220	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2895-03A-01W-0733-08	TCGA-AB-2895-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	27506220	27506220	A	T	SNP	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	missense	c.1836	p.F612L	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
