Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
ABCF1	23	genome.wustl.edu	36	6	30662408	30662408	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2920-03A-01W-0732-08	TCGA-AB-2920-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	30662408	30662408	G	A	SNP	ABCF1	NM_001025091	human	genbank	54_36p	+1	reviewed	missense	c.1972	p.G658S	1.000	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ZFR2	23217	genome.wustl.edu	36	19	3782807	3782807	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2920-03A-01W-0732-08	TCGA-AB-2920-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	3782807	3782807	G	A	SNP	ZFR2	NM_015174	human	genbank	54_36p	-1	validated	missense	c.449	p.A150V	0.036	NULL	HMMSmart_SM00451,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00572,HMMPfam_DZF	-	no_errors
PEAR1	375033	genome.wustl.edu	36	1	155141762	155141762	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2920-03A-01W-0732-08	TCGA-AB-2920-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	155141762	155141762	C	T	SNP	PEAR1	NM_001080471	human	genbank	54_36p	+1	provisional	missense	c.229	p.R77C	0.994	HMMPfam_EMI	HMMPfam_EMI,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_Grow_fac_recept	-	no_errors
NINL	22981	genome.wustl.edu	36	20	25405050	25405055	+	In_Frame_Del	DEL	CTCCCA	CTCCCA	-			TCGA-AB-2920-03A-01W-0732-08	TCGA-AB-2920-11A-01W-0732-08	CTCCCA	CTCCCA			CTCCCA	CTCCCA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	25405050	25405055	CTCCCA	-	DEL	NLP	NM_025176	human	genbank	54_36p	-1	validated	in_frame_del	c.2877_2872	p.WE958in_frame_del	0.000:0.000:0.000:0.001:0.000:0.000	NULL	HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473	-	no_errors
MT-ND1	0	genome.wustl.edu	36	MT	3686	3686	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2920-03A-01W-0732-08	TCGA-AB-2920-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	3686	3686	T	C	SNP	MT-ND1	ENST00000361390	human	ensembl	54_36p	+1	known	missense	c.379	p.Y127H	NULL	HMMPfam_NADHdh	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_1,PatternScan_COMPLEX1_ND1_2	-	no_errors
KCNA4	3739	genome.wustl.edu	36	11	29990509	29990509	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2920-03A-01W-0732-08	TCGA-AB-2920-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	29990509	29990509	C	T	SNP	KCNA4	NM_002233	human	genbank	54_36p	-1	reviewed	missense	c.293	p.R98Q	0.941	NULL	HMMSmart_SM00225,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,HMMPfam_K_channel_TID,superfamily_Voltage-gated potassium channels	-	no_errors
ENSG00000204989	0	genome.wustl.edu	36	11	59016357	59016357	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2920-03A-01W-0732-08	TCGA-AB-2920-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	59016357	59016357	G	T	SNP	ENSG00000204989	ENST00000378245	human	ensembl	54_36p	+1	known	missense	c.552	p.M184I	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
CBX7	23492	genome.wustl.edu	36	22	37864635	37864636	+	Frame_Shift_Ins	INS	-	-	GCTC			TCGA-AB-2920-03A-01W-0732-08	TCGA-AB-2920-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	37864635	37864636	-	GCTC	INS	CBX7	NM_175709	human	genbank	54_36p	-1	validated	frame_shift_ins	c.198_197	p.G68fs	0.981:0.999	NULL	superfamily_Chromodomain-like,HMMSmart_CHROMO,HMMPfam_Chromo,PatternScan_CHROMO_1	-	no_errors
ARHGEF1	9138	genome.wustl.edu	36	19	47101973	47101973	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2920-03A-01W-0732-08	TCGA-AB-2920-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	47101973	47101973	G	A	SNP	ARHGEF1	NM_199002	human	genbank	54_36p	+1	reviewed	missense	c.2492	p.R831K	1.000	NULL	HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMSmart_PH	-	no_errors
MAL	4118	genome.wustl.edu	36	2	95079067	95079067	+	Silent	SNP	C	C	T			TCGA-AB-2920-03A-01W-0732-08	TCGA-AB-2920-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	95079067	95079067	C	T	SNP	MAL	NM_002371	human	genbank	54_36p	+1	reviewed	silent	c.276	p.H92	0.425	HMMPfam_MARVEL	HMMPfam_MARVEL	-	no_errors
NF1	4763	genome.wustl.edu	36	17	26586873	26586873	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2920-03A-01W-0732-08	TCGA-AB-2920-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	26586873	26586873	G	A	SNP	NF1	NM_001042492	human	genbank	54_36p	+1	reviewed	missense	c.3827	p.R1276Q	1.000	HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP	HMMSmart_SM00516,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP	-	no_errors
VARS2	57176	genome.wustl.edu	36	6	30994596	30994596	+	Silent	SNP	G	G	A			TCGA-AB-2920-03A-01W-0732-08	TCGA-AB-2920-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	30994596	30994596	G	A	SNP	VARS2	NM_020442	human	genbank	54_36p	+1	provisional	silent	c.999	p.V333	0.615	superfamily_Nucleotidylyl transferase,HMMPfam_tRNA-synt_1,superfamily_ValRS/IleRS/LeuRS editing domain	superfamily_Nucleotidylyl transferase,HMMPfam_tRNA-synt_1,PatternScan_AA_TRNA_LIGASE_I,superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1	-	no_errors
ACTL7A	10881	genome.wustl.edu	36	9	110665699	110665699	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2920-03A-01W-0732-08	TCGA-AB-2920-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	110665699	110665699	G	C	SNP	ACTL7A	NM_006687	human	genbank	54_36p	+1	reviewed	missense	c.1276	p.G426R	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	HMMPfam_Actin,superfamily_Actin-like ATPase domain,HMMSmart_SM00268	-	no_errors
