Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
U2AF1	7307	genome.wustl.edu	36	21	43397525	43397525	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	43397525	43397525	G	A	SNP	U2AF1	NM_001025203	human	genbank	54_36p	-1	reviewed	missense	c.101	p.S34F	1.000	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,superfamily_SSF54928	-	no_errors
PGBD1	84547	genome.wustl.edu	36	6	28377655	28377655	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	28377655	28377655	A	G	SNP	PGBD1	NM_032507	human	genbank	54_36p	+1	reviewed	missense	c.2045	p.N682S	0.978	NULL	HMMPfam_SCAN,HMMSmart_SCAN	-	no_errors
ACPL2	92370	genome.wustl.edu	36	3	142493844	142493844	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	142493844	142493844	T	G	SNP	ACPL2	NM_001037172	human	genbank	54_36p	+1	validated	missense	c.550	p.Y184D	1.000	superfamily_Phosphoglycerate mutase-like,HMMPfam_Acid_phosphat_A	superfamily_Phosphoglycerate mutase-like,HMMPfam_Acid_phosphat_A	-	no_errors
ZNF420	147923	genome.wustl.edu	36	19	42310451	42310451	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	42310451	42310451	C	T	SNP	ZNF420	NM_144689	human	genbank	54_36p	+1	provisional	nonsense	c.718	p.R240*	0.002	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
CAGE1	285782	genome.wustl.edu	36	6	7324007	7324007	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	7324007	7324007	G	T	SNP	CAGE1	NM_205864	human	genbank	54_36p	-1	validated	missense	c.121	p.Q41K	0.001	NULL	NULL	-	no_errors
ASB11	140456	genome.wustl.edu	36	X	15216005	15216005	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	15216005	15216005	G	A	SNP	ASB11	NM_080873	human	genbank	54_36p	-1	reviewed	missense	c.766	p.R256C	0.006	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_SOCS_box	-	no_errors
STRC	161497	genome.wustl.edu	36	15	41697471	41697471	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	41697471	41697471	G	A	SNP	STRC	NM_153700	human	genbank	54_36p	-1	reviewed	missense	c.440	p.A147V	0.996	NULL	NULL	-	no_errors
DST	667	genome.wustl.edu	36	6	56588852	56588852	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	56588852	56588852	C	T	SNP	DST	NM_001723	human	genbank	54_36p	-1	reviewed	missense	c.7372	p.E2458K	1.000	superfamily_SSF75399,HMMSmart_PLEC	HMMSmart_SPEC,superfamily_Spectrin,HMMPfam_Spectrin,superfamily_SSF75399,HMMSmart_PLEC,HMMPfam_Plectin	-	no_errors
CR1	1378	genome.wustl.edu	36	1	205851951	205851951	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	205851951	205851951	G	A	SNP	CR1	NM_000651	human	genbank	54_36p	+1	reviewed	missense	c.6517	p.V2173M	0.019	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors
IGLV3-22	28795	genome.wustl.edu	36	22	21377140	21377140	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	21377140	21377140	C	G	SNP	IGLV3-22	ENST00000390307	human	ensembl	54_36p	+1	known	missense	c.178	p.Q60E	0.659	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406	-	no_stop_codon
FAM82B	51115	genome.wustl.edu	36	8	87588410	87588410	+	Silent	SNP	A	A	G			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	87588410	87588410	A	G	SNP	FAM82B	NM_016033	human	genbank	54_36p	-1	validated	silent	c.177	p.A59	0.989	NULL	superfamily_Prenyl_trans	-	no_errors
DPF2	5977	genome.wustl.edu	36	11	64870298	64870298	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	64870298	64870298	T	A	SNP	DPF2	NM_006268	human	genbank	54_36p	+1	reviewed	missense	c.909	p.H303Q	1.000	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors
TET2	54790	genome.wustl.edu	36	4	106377418	106377419	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	106377418	106377419	-	A	INS	TET2	NM_017628	human	genbank	54_36p	+1	validated	frame_shift_ins	c.2870_2871	p.Q958fs	1.000:0.960	NULL	NULL	-	no_errors
CCL20	6364	genome.wustl.edu	36	2	228388516	228388516	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	228388516	228388516	T	A	SNP	CCL20	NM_004591	human	genbank	54_36p	+1	validated	missense	c.179	p.I60N	0.996	superfamily_Interleukin 8-like chemokines,HMMPfam_IL8,HMMSmart_SM00199,PatternScan_SMALL_CYTOKINES_CC	superfamily_Interleukin 8-like chemokines,HMMPfam_IL8,HMMSmart_SM00199,PatternScan_SMALL_CYTOKINES_CC	-	no_errors
MBOAT1	154141	genome.wustl.edu	36	6	20210600	20210600	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	20210600	20210600	T	-	DEL	MBOAT1	NM_001080480	human	genbank	54_36p	-1	provisional	frame_shift_del	c.1384	p.I462fs	0.993	NULL	HMMPfam_MBOAT	-	no_errors
NRAS	4893	genome.wustl.edu	36	1	115058052	115058052	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	115058052	115058052	T	C	SNP	NRAS	NM_002524	human	genbank	54_36p	-1	reviewed	missense	c.182	p.Q61R	1.000	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RNF25	64320	genome.wustl.edu	36	2	219241639	219241639	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	219241639	219241639	G	T	SNP	RNF25	NM_022453	human	genbank	54_36p	-1	reviewed	missense	c.49	p.P17T	1.000	HMMPfam_RWD	HMMPfam_RWD,HMMSmart_SM00591,superfamily_UBC-like,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors
TMEM104	54868	genome.wustl.edu	36	17	70303340	70303340	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	70303340	70303340	C	T	SNP	TMEM104	NM_017728	human	genbank	54_36p	+1	validated	nonsense	c.610	p.R204*	0.969	NULL	HMMPfam_Aa_trans	-	no_errors
TET2	54790	genome.wustl.edu	36	4	106376196	106376196	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	106376196	106376196	C	T	SNP	TET2	NM_017628	human	genbank	54_36p	+1	validated	nonsense	c.1648	p.R550*	0.001	NULL	NULL	-	no_errors
PKD2L1	9033	genome.wustl.edu	36	10	102038158	102038158	+	Silent	SNP	C	C	T			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	102038158	102038158	C	T	SNP	PKD2L1	NM_016112	human	genbank	54_36p	-1	reviewed	silent	c.2403	p.T801	0.000	NULL	HMMPfam_PKD_channel,superfamily_Voltage-gated potassium channels	-	no_errors
DYNC1I1	1780	genome.wustl.edu	36	7	95452146	95452146	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	95452146	95452146	C	T	SNP	DYNC1I1	NM_004411	human	genbank	54_36p	+1	validated	missense	c.715	p.R239W	0.928	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
MEGF10	84466	genome.wustl.edu	36	5	126702791	126702791	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	126702791	126702791	G	T	SNP	MEGF10	NM_032446	human	genbank	54_36p	+1	validated	missense	c.197	p.W66L	1.000	HMMPfam_EMI	HMMPfam_EMI,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00180,HMMPfam_Laminin_EGF,HMMPfam_EGF_2,superfamily_Plant inhibitors of proteinases and amylases	-	no_errors
RPS10	6204	genome.wustl.edu	36	6	34500485	34500485	+	Silent	SNP	C	C	T			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	34500485	34500485	C	T	SNP	RPS10	NM_001014	human	genbank	54_36p	-1	reviewed	silent	c.261	p.P87	0.757	HMMPfam_S10_plectin	HMMPfam_S10_plectin	-	no_errors
PPL	5493	genome.wustl.edu	36	16	4875050	4875050	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	4875050	4875050	G	A	SNP	PPL	NM_002705	human	genbank	54_36p	-1	reviewed	missense	c.3607	p.R1203W	0.992	NULL	HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	-	no_errors
SLC25A42	284439	genome.wustl.edu	36	19	19067973	19067973	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	19067973	19067973	G	A	SNP	SLC25A42	NM_178526	human	genbank	54_36p	+1	provisional	missense	c.40	p.E14K	0.460	NULL	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors
CGN	57530	genome.wustl.edu	36	1	149773088	149773088	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	149773088	149773088	G	A	SNP	CGN	NM_020770	human	genbank	54_36p	+1	validated	missense	c.2756	p.R919Q	1.000	NULL	HMMPfam_Myosin_tail_1	-	no_errors
OR5W2	390148	genome.wustl.edu	36	11	55438204	55438204	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2923-03A-01W-0745-08	TCGA-AB-2923-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	55438204	55438204	A	T	SNP	OR5W2	NM_001001960	human	genbank	54_36p	-1	provisional	missense	c.431	p.L144H	0.011	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
