Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
PPAP2A	8611	genome.wustl.edu	36	5	54757513	54757513	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2924-03A-01W-0745-08	TCGA-AB-2924-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	54757513	54757513	A	C	SNP	PPAP2A	NM_176895	human	genbank	54_36p	-1	reviewed	missense	c.664	p.Y222D	1.000	superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase,HMMPfam_PAP2,HMMSmart_SM00014	superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase,HMMPfam_PAP2,HMMSmart_SM00014	-	no_errors
SLC45A2	51151	genome.wustl.edu	36	5	34020284	34020284	+	Silent	SNP	C	C	T			TCGA-AB-2924-03A-01W-0745-08	TCGA-AB-2924-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	34020284	34020284	C	T	SNP	SLC45A2	NM_016180	human	genbank	54_36p	-1	reviewed	silent	c.162	p.A54	0.858	superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter	-	no_errors
VWCE	220001	genome.wustl.edu	36	11	60802457	60802457	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2924-03A-01W-0745-08	TCGA-AB-2924-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	60802457	60802457	G	-	DEL	VWCE	NM_152718	human	genbank	54_36p	-1	validated	frame_shift_del	c.1392	p.V465fs	0.998	HMMPfam_VWC,HMMSmart_SM00214,HMMSmart_SM00215	HMMSmart_SM00181,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMSmart_SM00215,PatternScan_C_TYPE_LECTIN_1	-	no_errors
DMRT3	58524	genome.wustl.edu	36	9	980602	980602	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2924-03A-01W-0745-08	TCGA-AB-2924-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	980602	980602	C	G	SNP	DMRT3	NM_021240	human	genbank	54_36p	+1	validated	missense	c.1016	p.T339R	0.998	NULL	superfamily_DM_DNA_bd,HMMPfam_DM,HMMSmart_DM,PatternScan_DM_1,HMMPfam_DMA	-	no_errors
KRT27	342574	genome.wustl.edu	36	17	36192063	36192063	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2924-03A-01W-0745-08	TCGA-AB-2924-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	36192063	36192063	G	A	SNP	KRT27	NM_181537	human	genbank	54_36p	-1	validated	missense	c.209	p.A70V	0.000	NULL	HMMPfam_Filament	-	no_errors
KDM6A	7403	genome.wustl.edu	36	X	44826970	44826970	+	Silent	SNP	T	T	C			TCGA-AB-2924-03A-01W-0745-08	TCGA-AB-2924-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	44826970	44826970	T	C	SNP	UTX	NM_021140	human	genbank	54_36p	+1	validated	silent	c.3276	p.D1092	1.000	NULL	HMMPfam_TPR_1,HMMSmart_JmjC,HMMPfam_JmjC,HMMSmart_TPR,superfamily_SSF48452	-	no_errors
DNM1P46	196968	genome.wustl.edu	36	15	98157646	98157648	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-AB-2924-03A-01W-0745-08	TCGA-AB-2924-11A-01W-0745-08	AGA	AGA			AGA	AGA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	98157646	98157648	AGA	-	DEL	C15orf51	ENST00000341853	human	ensembl	54_36p	-1	known	in_frame_del	c.632_630	p.L211in_frame_del	0.793:0.765:0.757	NULL	NULL	-	no_errors
KIR3DL1	3811	genome.wustl.edu	36	19	60025096	60025096	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2924-03A-01W-0745-08	TCGA-AB-2924-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	60025096	60025096	C	T	SNP	KIR3DL1	NM_013289	human	genbank	54_36p	+1	reviewed	missense	c.920	p.P307L	0.151	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
CELSR3	1951	genome.wustl.edu	36	3	48674716	48674716	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2924-03A-01W-0745-08	TCGA-AB-2924-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	48674716	48674716	C	T	SNP	CELSR3	NM_001407	human	genbank	54_36p	-1	reviewed	missense	c.356	p.G119D	0.020	NULL	PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMSmart_SM00282,HMMPfam_HRM,HMMSmart_SM00008,HMMSmart_SM00179,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_EGF/Laminin	-	no_errors
PDXDC2P	283970	genome.wustl.edu	36	16	68581428	68581428	+	RNA	DEL	C	C	-			TCGA-AB-2924-03A-01W-0745-08	TCGA-AB-2924-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	68581428	68581428	C	-	DEL	PDXDC2	NR_003610	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.002	-	-	-	pseudogene
PHLPP1	23239	genome.wustl.edu	36	18	58648409	58648409	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2924-03A-01W-0745-08	TCGA-AB-2924-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	58648409	58648409	G	C	SNP	PHLPP	NM_194449	human	genbank	54_36p	+1	validated	missense	c.202	p.G68R	1.000	HMMPfam_PH	HMMPfam_PH,superfamily_L domain-like,HMMSmart_SM00369,HMMSmart_SM00364,HMMPfam_LRR_1,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C	-	no_errors
RHPN2	85415	genome.wustl.edu	36	19	38182425	38182425	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2924-03A-01W-0745-08	TCGA-AB-2924-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	38182425	38182425	G	A	SNP	RHPN2	NM_033103	human	genbank	54_36p	-1	provisional	nonsense	c.1132	p.Q378*	1.000	HMMPfam_BRO1	HMMPfam_HR1,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_BRO1,HMMSmart_Hr1,superfamily_PKN_effector	-	no_errors
BCMO1	53630	genome.wustl.edu	36	16	79850793	79850793	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2924-03A-01W-0745-08	TCGA-AB-2924-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	79850793	79850793	T	G	SNP	BCMO1	NM_017429	human	genbank	54_36p	+1	reviewed	missense	c.205	p.Y69D	0.938	HMMPfam_RPE65	HMMPfam_RPE65	-	no_errors
DIO2	1734	genome.wustl.edu	36	14	79739147	79739147	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2924-03A-01W-0745-08	TCGA-AB-2924-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	79739147	79739147	C	T	SNP	DIO2	NM_001007023	human	genbank	54_36p	-1	reviewed	missense	c.568	p.A190T	1.000	HMMPfam_T4_deiodinase	HMMPfam_T4_deiodinase	-	pseudogene
ABL1	25	genome.wustl.edu	36	9	132749785	132749785	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2924-03A-01W-0745-08	TCGA-AB-2924-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	132749785	132749785	C	T	SNP	ABL1	NM_007313	human	genbank	54_36p	+1	reviewed	missense	c.2344	p.P782S	1.000	NULL	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_F_actin_bind,HMMSmart_SM00808	-	no_errors
MUC16	94025	genome.wustl.edu	36	19	8945715	8945715	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2924-03A-01W-0745-08	TCGA-AB-2924-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	8945715	8945715	C	T	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	missense	c.7100	p.S2367N	0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27490642	27490642	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2924-03A-01W-0745-08	TCGA-AB-2924-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	27490642	27490642	C	A	SNP	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	missense	c.2503	p.D835Y	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TATG			TCGA-AB-2924-03A-01W-0745-08	TCGA-AB-2924-11A-01W-0745-08	-	-			-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	5	170770152	170770153	0	TATG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
