Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
NOTCH2NL	388677	genome.wustl.edu	36	1	143920510	143920512	+	In_Frame_Del	DEL	GGC	GGC	-			TCGA-AB-2931-03A-01W-0745-08	TCGA-AB-2931-11A-01W-0745-08	GGC	GGC			GGC	GGC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	143920510	143920512	GGC	-	DEL	NOTCH2NL	ENST00000362074	human	ensembl	54_36p	+1	known	in_frame_del	c.48_50	p.A19in_frame_del	1.000:1.000:1.000	NULL	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_start_codon
LOC441642	441642	genome.wustl.edu	36	12	75517605	75517605	+	Silent	SNP	G	G	A			TCGA-AB-2931-03A-01W-0745-08	TCGA-AB-2931-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	75517605	75517605	G	A	SNP	LOC441642	XM_001714198	human	genbank	54_36p	+1	model	silent	c.24	p.K8	1.000	NULL	superfamily_L30e-like	-	pseudogene
SYNE1	23345	genome.wustl.edu	36	6	152779761	152779761	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2931-03A-01W-0745-08	TCGA-AB-2931-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	152779761	152779761	C	T	SNP	SYNE1	NM_182961	human	genbank	54_36p	-1	reviewed	missense	c.5504	p.R1835H	0.024	superfamily_Spectrin repeat	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,HMMPfam_Spectrin,HMMPfam_KASH	-	no_errors
NRCAM	4897	genome.wustl.edu	36	7	107618963	107618963	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2931-03A-01W-0745-08	TCGA-AB-2931-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	107618963	107618963	G	A	SNP	NRCAM	NM_001037132	human	genbank	54_36p	-1	reviewed	missense	c.1904	p.A635V	1.000	superfamily_Immunoglobulin	PatternScan_IG_MHC,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
C17orf97	400566	genome.wustl.edu	36	17	264033	264033	+	Silent	SNP	C	C	T			TCGA-AB-2931-03A-01W-0745-08	TCGA-AB-2931-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	264033	264033	C	T	SNP	C17orf97	NM_001013672	human	genbank	54_36p	+1	validated	silent	c.1083	p.A361	0.002	NULL	NULL	-	no_errors
C3	718	genome.wustl.edu	36	19	6658203	6658203	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2931-03A-01W-0745-08	TCGA-AB-2931-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	6658203	6658203	C	T	SNP	C3	NM_000064	human	genbank	54_36p	-1	reviewed	missense	c.2129	p.R710Q	0.942	superfamily_Anaphylotoxins (complement system),HMMPfam_ANATO,HMMSmart_SM00104,PatternScan_ANAPHYLATOXIN_1	HMMPfam_A2M_N,HMMPfam_A2M_N_2,superfamily_Anaphylotoxins (complement system),HMMPfam_ANATO,HMMSmart_SM00104,PatternScan_ANAPHYLATOXIN_1,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep,superfamily_TIMP-like,HMMSmart_SM00643,HMMPfam_NTR	-	no_errors
HSPB7	27129	genome.wustl.edu	36	1	16214717	16214717	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2931-03A-01W-0745-08	TCGA-AB-2931-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	16214717	16214717	C	T	SNP	HSPB7	NM_014424	human	genbank	54_36p	-1	validated	missense	c.458	p.R153H	0.906	superfamily_HSP20-like chaperones,HMMPfam_HSP20	superfamily_HSP20-like chaperones,HMMPfam_HSP20	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25310747	25310747	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2931-03A-01W-0745-08	TCGA-AB-2931-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25310747	25310747	G	A	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2644	p.R882C	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
ENSG00000211459	0	genome.wustl.edu	36	MT	913	913	+	RNA	SNP	T	T	C			TCGA-AB-2931-03A-01W-0745-08	TCGA-AB-2931-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	913	913	T	C	SNP	ENSG00000211459	ENST00000389680	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
SMPD4	55627	genome.wustl.edu	36	2	130629190	130629190	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2931-03A-01W-0745-08	TCGA-AB-2931-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	130629190	130629190	G	A	SNP	SMPD4	NM_017951	human	genbank	54_36p	-1	validated	nonsense	c.1519	p.R507*	1.000	NULL	NULL	-	no_errors
KRTAP10-7	386675	genome.wustl.edu	36	21	44845000	44845000	+	Silent	SNP	C	C	T			TCGA-AB-2931-03A-01W-0745-08	TCGA-AB-2931-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	44845000	44845000	C	T	SNP	KRTAP10-7	NM_198689	human	genbank	54_36p	+1	validated	silent	c.51	p.S17	0.002	NULL	HMMPfam_Keratin_B2	-	no_errors
ACTBL2	345651	genome.wustl.edu	36	5	56813496	56813496	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2931-03A-01W-0745-08	TCGA-AB-2931-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	56813496	56813496	A	G	SNP	ACTBL2	NM_001017992	human	genbank	54_36p	-1	validated	missense	c.796	p.S266P	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_1,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2	-	no_errors
GSTK1	373156	genome.wustl.edu	36	7	142670742	142670742	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2931-03A-01W-0745-08	TCGA-AB-2931-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	142670742	142670742	C	T	SNP	GSTK1	NM_015917	human	genbank	54_36p	+1	reviewed	missense	c.14	p.P5L	0.419	superfamily_Thioredoxin-like	HMMPfam_DSBA,superfamily_Thioredoxin-like	-	no_errors
ZAN	7455	genome.wustl.edu	36	7	100187542	100187542	+	Silent	SNP	C	C	A			TCGA-AB-2931-03A-01W-0745-08	TCGA-AB-2931-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	100187542	100187542	C	A	SNP	ZAN	ENST00000349350	human	ensembl	54_36p	+1	known	silent	c.1878	p.P626	0.007	NULL	HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1,superfamily_Serine proterase inhibitors,HMMPfam_TIL,PatternScan_EGF_2,HMMSmart_SM00215,HMMPfam_TIL_assoc,HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,HMMSmart_SM00181,HMMSmart_SM00214,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_EGF_1	-	no_errors
NLRP11	204801	genome.wustl.edu	36	19	61013186	61013186	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2931-03A-01W-0745-08	TCGA-AB-2931-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	61013186	61013186	T	G	SNP	NLRP11	NM_145007	human	genbank	54_36p	-1	validated	missense	c.602	p.E201A	0.072	HMMPfam_NACHT	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,PatternScan_CU2_MONOOXYGENASE_1,superfamily_RNI-like,HMMSmart_SM00368	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27506219	27506220	+	In_Frame_Ins	INS	-	-	AAACTCTAAATTTTCTCTTGGAAACTCCCATTTGAGATCATATTCATATTCTCTGAAATCAACGTAGAAGCCCTG			TCGA-AB-2931-03A-01W-0745-08	TCGA-AB-2931-11A-01W-0745-08	-	-			-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	13	27506219	27506220	-	AAACTCTAAATTTTCTCTTGGAAACTCCCATTTGAGATCATATTCATATTCTCTGAAATCAACGTAGAAGCCCTG	INS	FLT3					-1	reviewed	in_frame_ins	c.1837_1836	p.612in_frame_insQGFYVDFREYEYDLKWEFPRENLEF	1.000:1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	NA
CPAMD8	27151	genome.wustl.edu	36	19	16952465	16952465	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2931-03A-01W-0745-08	TCGA-AB-2931-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	16952465	16952465	G	T	SNP	CPAMD8	NM_015692	human	genbank	54_36p	-1	validated	missense	c.1568	p.S523Y	1.000	HMMPfam_A2M_N_2	HMMPfam_A2M,HMMPfam_Kazal_1,HMMSmart_SM00280,HMMPfam_A2M_N,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_recep,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_N_2,HMMPfam_A2M_comp,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,superfamily_Kazal-type serine protease inhibitors	-	no_errors
