Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
ZNF320	162967	genome.wustl.edu	36	19	58083232	58083232	+	Silent	SNP	T	T	C			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	58083232	58083232	T	C	SNP	ZNF320	NM_207333	human	genbank	54_36p	-1	validated	silent	c.102	p.R34	0.308	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LOC645468	645468	genome.wustl.edu	36	6	167034807	167034808	+	RNA	INS	-	-	CT			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	167034807	167034808	-	CT	INS	LOC645468	XR_017635	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene
FAM22A	728118	genome.wustl.edu	36	10	88982602	88982602	+	Silent	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	88982602	88982602	C	T	SNP	FAM22A	NM_001099338	human	genbank	54_36p	+1	validated	silent	c.1614	p.P538	0.006	NULL	NULL	-	no_errors
POC5	134359	genome.wustl.edu	36	5	75016909	75016909	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	75016909	75016909	G	A	SNP	C5orf37	NM_001099271	human	genbank	54_36p	-1	validated	missense	c.1286	p.A429V	0.002	NULL	NULL	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25316790	25316790	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25316790	25316790	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2207	p.R736H	1.000	HMMPfam_DNA_methylase,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
PLXNC1	10154	genome.wustl.edu	36	12	93144563	93144563	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	93144563	93144563	G	T	SNP	PLXNC1	NM_005761	human	genbank	54_36p	+1	provisional	missense	c.1842	p.R614S	0.114	HMMPfam_PSI,HMMSmart_PSI	superfamily_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,HMMPfam_TIG,HMMSmart_IPT,HMMPfam_Plexin_cytopl,superfamily_Rho_GAP	-	no_errors
DSPP	1834	genome.wustl.edu	36	4	88754809	88754809	+	Silent	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	88754809	88754809	C	T	SNP	DSPP	NM_014208	human	genbank	54_36p	+1	reviewed	silent	c.1971	p.S657	0.268	NULL	NULL	-	no_errors
PKD1L1	168507	genome.wustl.edu	36	7	47890758	47890758	+	Silent	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	47890758	47890758	G	A	SNP	PKD1L1	NM_138295	human	genbank	54_36p	-1	reviewed	silent	c.3228	p.D1076	0.085	NULL	HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PKD,HMMPfam_REJ,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_PKD_channel	-	no_errors
LOC645468	645468	genome.wustl.edu	36	6	167035903	167035913	+	RNA	DEL	GCTTGTCTAGC	GCTTGTCTAGC	-			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	GCTTGTCTAGC	GCTTGTCTAGC			GCTTGTCTAGC	GCTTGTCTAGC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	167035903	167035913	GCTTGTCTAGC	-	DEL	LOC645468	XR_017635	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.993:0.998:0.995:0.887:0.884:0.876:0.866:0.853:0.834:0.810:0.805	-	-	-	pseudogene
TMEM185A	84548	genome.wustl.edu	36	X	148498176	148498176	+	Silent	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	148498176	148498176	C	T	SNP	TMEM185A	NM_032508	human	genbank	54_36p	-1	provisional	silent	c.357	p.L119	0.660	HMMPfam_Tmemb_185A	HMMPfam_Tmemb_185A	-	no_errors
ENSG00000204562	0	genome.wustl.edu	36	9	83722517	83722517	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	83722517	83722517	T	G	SNP	ENSG00000204562	ENST00000376459	human	ensembl	54_36p	+1	known	missense	c.390	p.I130M	0.000	NULL	NULL	-	no_errors
ACSM2B	348158	genome.wustl.edu	36	16	20459488	20459488	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	20459488	20459488	A	T	SNP	ACSM2B	NM_001105069	human	genbank	54_36p	-1	validated	missense	c.1618	p.Y540N	1.000	superfamily_Acetyl-CoA synthetase-like	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors
ENSG00000198277	0	genome.wustl.edu	36	4	69905310	69905310	+	Silent	SNP	A	A	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	69905310	69905310	A	G	SNP	ENSG00000198277	ENST00000381096	human	ensembl	54_36p	-1	known	silent	c.186	p.H62	0.951	HMMPfam_UDPGT	superfamily_SSF53756,HMMPfam_UDPGT	-	no_errors
C6orf222	389384	genome.wustl.edu	36	6	36401061	36401061	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	36401061	36401061	G	A	SNP	C6orf222	NM_001010903	human	genbank	54_36p	-1	predicted	missense	c.1145	p.P382L	0.000	NULL	NULL	-	no_errors
CYBRD1	79901	genome.wustl.edu	36	2	172119343	172119343	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	172119343	172119343	G	T	SNP	CYBRD1	ENST00000375252	human	ensembl	54_36p	+1	known	missense	c.412	p.D138Y	0.981	NULL	HMMPfam_Cytochrom_B561,PatternScan_SPASE_I_1	-	no_errors
INPP4A	3631	genome.wustl.edu	36	2	98519047	98519047	+	Silent	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	98519047	98519047	G	A	SNP	INPP4A	NM_001566	human	genbank	54_36p	+1	reviewed	silent	c.411	p.T137	1.000	superfamily_C2_CaLB,HMMSmart_C2	superfamily_C2_CaLB,HMMSmart_C2	-	no_errors
LOC727815	727815	genome.wustl.edu	36	12	7483764	7483766	+	RNA	DEL	CTT	CTT	-			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	CTT	CTT			CTT	CTT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	7483764	7483766	CTT	-	DEL	LOC727815	XR_015164	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.103:0.109:0.136	-	-	-	no_errors
PLEKHG5	57449	genome.wustl.edu	36	1	6451770	6451772	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-AB-2934-03A-01W-0745-08	TCGA-AB-2934-11A-01W-0745-08	TCC	TCC			TCC	TCC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	6451770	6451772	TCC	-	DEL	PLEKHG5	NM_198681	human	genbank	54_36p	-1	reviewed	in_frame_del	c.2399_2397	p.E800in_frame_del	0.195:0.260:0.326	NULL	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	-	no_errors
LOC121456	121456	genome.wustl.edu	36	12	97373657	97373660	+	RNA	DEL	AGAG	AGAG	-			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	AGAG	AGAG			AGAG	AGAG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	97373657	97373660	AGAG	-	DEL	LOC121456	XR_016411	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.956:1.000:1.000:1.000	-	-	-	no_errors
CCDC9	26093	genome.wustl.edu	36	19	52466506	52466508	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	GAG	GAG			GAG	GAG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	52466506	52466508	GAG	-	DEL	CCDC9	NM_015603	human	genbank	54_36p	+1	validated	in_frame_del	c.1327_1329	p.E445in_frame_del	0.996:0.988:0.768	NULL	NULL	-	no_errors
SH3KBP1	30011	genome.wustl.edu	36	X	19473963	19473963	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	19473963	19473963	G	C	SNP	SH3KBP1	NM_031892	human	genbank	54_36p	-1	validated	missense	c.1621	p.Q541E	1.000	NULL	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
C9orf43	257169	genome.wustl.edu	36	9	115225484	115225484	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2934-03A-01W-0745-08	TCGA-AB-2934-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	115225484	115225484	A	G	SNP	C9orf43	NM_152786	human	genbank	54_36p	+1	predicted	missense	c.541	p.T181A	0.000	NULL	NULL	-	no_errors
LOC728640	728640	genome.wustl.edu	36	10	60145960	60145960	+	RNA	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	60145960	60145960	C	T	SNP	LOC728640	XR_015474	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.988	-	-	-	pseudogene
SLC6A9	6536	genome.wustl.edu	36	1	44239790	44239790	+	Silent	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	44239790	44239790	G	A	SNP	SLC6A9	NM_201649	human	genbank	54_36p	-1	validated	silent	c.1278	p.G426	0.966	HMMPfam_SNF	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2	-	no_errors
CIB3	117286	genome.wustl.edu	36	19	16141516	16141516	+	Silent	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	16141516	16141516	G	A	SNP	CIB3	NM_054113	human	genbank	54_36p	-1	reviewed	silent	c.123	p.L41	0.927	superfamily_EF-hand	superfamily_EF-hand,PatternScan_EF_HAND_1	-	no_errors
LPIN3	64900	genome.wustl.edu	36	20	39407916	39407916	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	39407916	39407916	G	A	SNP	LPIN3	NM_022896	human	genbank	54_36p	+1	validated	missense	c.59	p.R20Q	0.999	HMMPfam_Lipin_N	HMMPfam_Lipin_N,superfamily_HAD-like,HMMPfam_LNS2,HMMSmart_SM00775	-	no_errors
DEFB4A	1673	genome.wustl.edu	36	8	7789665	7789665	+	Silent	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	7789665	7789665	C	T	SNP	DEFB4	NM_004942	human	genbank	54_36p	+1	reviewed	silent	c.21	p.L7	0.000	NULL	HMMPfam_Defensin_beta,superfamily_SSF57392,HMMSmart_DEFSN	-	no_errors
TDRD9	122402	genome.wustl.edu	36	14	103570054	103570054	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	103570054	103570054	G	A	SNP	TDRD9	ENST00000409874	human	ensembl	54_36p	+1	known	missense	c.3514	p.V1172I	0.896	NULL	HMMSmart_SM00487,HMMPfam_DEAD,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333	-	no_errors
DAXX	1616	genome.wustl.edu	36	6	33395774	33395774	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	33395774	33395774	G	C	SNP	DAXX	NM_001350	human	genbank	54_36p	-1	reviewed	missense	c.1457	p.A486G	0.025	HMMPfam_Daxx	HMMPfam_Daxx	-	no_errors
RDH11	51109	genome.wustl.edu	36	14	67229022	67229022	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	67229022	67229022	C	T	SNP	RDH11	NM_016026	human	genbank	54_36p	-1	validated	missense	c.235	p.E79K	1.000	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short	-	no_errors
LOC732162	732162	genome.wustl.edu	36	7	23821363	23821364	+	Splice_Site	INS	-	-	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	23821363	23821364	-	A	INS	LOC732162	XR_037752	human	genbank	54_36p	+1	model	splice_site_ins	c.NULL	NULL	0.033:0.020	-	-	-	pseudogene
DHRS12	79758	genome.wustl.edu	36	13	51243554	51243556	+	In_Frame_Del	DEL	ATT	ATT	-			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	ATT	ATT			ATT	ATT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	51243554	51243556	ATT	-	DEL	DHRS12	NM_001031719	human	genbank	54_36p	-1	provisional	in_frame_del	c.638_636	p.I212in_frame_del	0.001:0.001:0.000	superfamily_NAD(P)-bd	superfamily_NAD(P)-bd	-	no_errors
IL23R	149233	genome.wustl.edu	36	1	67421184	67421184	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	67421184	67421184	G	A	SNP	IL23R	NM_144701	human	genbank	54_36p	+1	reviewed	missense	c.445	p.G149R	0.876	superfamily_Fibronectin type III,HMMPfam_fn3	superfamily_Fibronectin type III,HMMPfam_fn3	-	no_errors
ANKRD24	170961	genome.wustl.edu	36	19	4158293	4158293	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	4158293	4158293	T	C	SNP	ANKRD24	NM_133475	human	genbank	54_36p	+1	provisional	missense	c.521	p.L174P	0.967	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
ZNF671	79891	genome.wustl.edu	36	19	62924686	62924686	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	62924686	62924686	A	G	SNP	ZNF671	NM_024833	human	genbank	54_36p	-1	validated	missense	c.580	p.C194R	0.249	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF275	10838	genome.wustl.edu	36	X	152265754	152265754	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	152265754	152265754	G	T	SNP	ZNF275	NM_001080485	human	genbank	54_36p	+1	validated	missense	c.585	p.R195S	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
C20orf132	140699	genome.wustl.edu	36	20	35182837	35182837	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	35182837	35182837	T	C	SNP	C20orf132	NM_152503	human	genbank	54_36p	-1	validated	missense	c.1753	p.T585A	0.994	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
TMC2	117532	genome.wustl.edu	36	20	2569821	2569823	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	AAG	AAG			AAG	AAG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	2569821	2569823	AAG	-	DEL	TMC2	NM_080751	human	genbank	54_36p	+1	validated	in_frame_del	c.2545_2547	p.K850in_frame_del	0.663:0.697:0.708	NULL	HMMPfam_TMC	-	no_errors
LOC100130087	100130087	genome.wustl.edu	36	5	114965895	114965895	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0745-08	TCGA-AB-2934-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	114965895	114965895	G	A	SNP	LOC100130087	XM_001715088	human	genbank	54_36p	+1	model	missense	c.346	p.G116R	0.000	NULL	NULL	-	no_errors
COL3A1	1281	genome.wustl.edu	36	2	189580541	189580541	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	189580541	189580541	G	A	SNP	COL3A1	NM_000090	human	genbank	54_36p	+1	reviewed	missense	c.3326	p.R1109Q	1.000	HMMPfam_Collagen	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors
TMEM18	129787	genome.wustl.edu	36	2	662826	662826	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	662826	662826	G	A	SNP	TMEM18	NM_152834	human	genbank	54_36p	-1	validated	missense	c.215	p.A72V	1.000	NULL	NULL	-	no_errors
SIGLEC12	89858	genome.wustl.edu	36	19	56691970	56691970	+	Silent	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	56691970	56691970	G	A	SNP	SIGLEC12	NM_053003	human	genbank	54_36p	-1	reviewed	silent	c.1575	p.N525	0.000	NULL	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_C2-set_2,HMMPfam_ig	-	no_errors
NUDT4	11163	genome.wustl.edu	36	12	92312581	92312581	+	Silent	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	92312581	92312581	C	T	SNP	NUDT4	NM_199040	human	genbank	54_36p	+1	reviewed	silent	c.165	p.P55	0.810	superfamily_NUDIX_hydrolase,HMMPfam_NUDIX,PatternScan_NUDIX	superfamily_NUDIX_hydrolase,HMMPfam_NUDIX,PatternScan_NUDIX	-	no_errors
EGR1	1958	genome.wustl.edu	36	5	137829379	137829379	+	Silent	SNP	G	G	T			TCGA-AB-2934-03A-01W-0745-08	TCGA-AB-2934-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	137829379	137829379	G	T	SNP	EGR1	NM_001964	human	genbank	54_36p	+1	reviewed	silent	c.30	p.L10	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
IL25	64806	genome.wustl.edu	36	14	22911987	22911987	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	22911987	22911987	C	G	SNP	IL25	ENST00000397242	human	ensembl	54_36p	+1	known	missense	c.47	p.P16R	0.000	NULL	HMMPfam_IL17,superfamily_Cystine-knot cytokines	-	no_start_codon
ARHGEF25	115557	genome.wustl.edu	36	12	56296399	56296399	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	56296399	56296399	G	A	SNP	GEFT	NM_182947	human	genbank	54_36p	+1	validated	missense	c.1486	p.G496R	0.983	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like	-	no_errors
OR10AD1	121275	genome.wustl.edu	36	12	46883142	46883143	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	46883142	46883143	-	A	INS	OR10AD1	NM_001004134	human	genbank	54_36p	-1	provisional	frame_shift_ins	c.201_200	p.S68fs	0.999:1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
NR2E3	10002	genome.wustl.edu	36	15	69893433	69893433	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	69893433	69893433	C	T	SNP	NR2E3	ENST00000326995	human	ensembl	54_36p	+1	known	missense	c.1018	p.H340Y	1.000	superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors
MGAT4C	25834	genome.wustl.edu	36	12	84897866	84897866	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	84897866	84897866	G	T	SNP	MGAT4C	NM_013244	human	genbank	54_36p	-1	validated	missense	c.769	p.L257I	1.000	HMMPfam_Glyco_transf_54	HMMPfam_Glyco_transf_54	-	no_errors
CD8BP	927	genome.wustl.edu	36	2	106473825	106473825	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	106473825	106473825	T	C	SNP	CD8BP	ENST00000303432	human	ensembl	54_36p	+1	known	missense	c.107	p.M36T	0.000	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG	-	no_errors
HSD17B7P2	158160	genome.wustl.edu	36	10	38685349	38685349	+	RNA	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	38685349	38685349	C	T	SNP	HSD17B7P2	NR_003086	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.000	-	-	-	pseudogene
AARS	16	genome.wustl.edu	36	16	68861716	68861716	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	68861716	68861716	G	A	SNP	AARS	NM_001605	human	genbank	54_36p	-1	reviewed	missense	c.700	p.P234S	1.000	HMMPfam_tRNA-synt_2c,superfamily_SSF55681	HMMPfam_DHHA1,HMMPfam_tRNA_SAD,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,HMMPfam_tRNA-synt_2c,superfamily_SSF55681	-	no_errors
LOC100134184	100134184	genome.wustl.edu	36	1	4839	4839	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0745-08	TCGA-AB-2934-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	4839	4839	G	A	SNP	LOC100134184	XM_001717138	human	genbank	54_36p	+1	model	missense	c.1220	p.R407H	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
LOC644670	644670	genome.wustl.edu	36	X	147451	147451	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	147451	147451	C	T	SNP	LOC644670	XM_497182	human	genbank	54_36p	+1	model	missense	c.1856	p.P619L	0.033	NULL	superfamily_PLC-like phosphodiesterases	-	no_start_codon:pseudogene:no_stop_codon
DPYSL3	1809	genome.wustl.edu	36	5	146775522	146775522	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	146775522	146775522	T	C	SNP	DPYSL3	NM_001387	human	genbank	54_36p	-1	validated	missense	c.421	p.I141V	1.000	superfamily_Metalo_hydrolase,HMMPfam_Amidohydro_1,superfamily_SSF51556	superfamily_Metalo_hydrolase,HMMPfam_Amidohydro_1,superfamily_SSF51556	-	no_errors
GGA1	26088	genome.wustl.edu	36	22	36344461	36344461	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	36344461	36344461	C	T	SNP	GGA1	NM_013365	human	genbank	54_36p	+1	reviewed	missense	c.265	p.R89C	1.000	HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288	HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288,superfamily_GAT-like domain,HMMPfam_GAT,superfamily_Clathrin adaptor appendage domain,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809	-	no_errors
EVPL	2125	genome.wustl.edu	36	17	71515023	71515023	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	71515023	71515023	A	G	SNP	EVPL	NM_001988	human	genbank	54_36p	-1	validated	missense	c.5858	p.I1953T	1.000	superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	superfamily_Spectrin repeat,HMMSmart_SM00150,HMMSmart_SM00250,superfamily_Prefoldin,superfamily_Plakin repeat,HMMPfam_Plectin	-	no_errors
PVRL1	5818	genome.wustl.edu	36	11	119053612	119053612	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	119053612	119053612	C	T	SNP	PVRL1	NM_002855	human	genbank	54_36p	-1	validated	missense	c.596	p.R199Q	1.000	HMMPfam_C2-set_2,HMMSmart_SM00409,superfamily_Immunoglobulin	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_C2-set_2,HMMPfam_ig	-	no_errors
MEFV	4210	genome.wustl.edu	36	16	3233404	3233404	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	3233404	3233404	T	C	SNP	MEFV	NM_000243	human	genbank	54_36p	-1	reviewed	missense	c.2084	p.K695R	0.000	HMMPfam_SPRY,HMMSmart_SM00449	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors
MICALCL	84953	genome.wustl.edu	36	11	12272218	12272218	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	12272218	12272218	C	T	SNP	MICALCL	NM_032867	human	genbank	54_36p	+1	validated	missense	c.664	p.R222C	0.000	NULL	NULL	-	no_errors
EWSR1	2130	genome.wustl.edu	36	22	28024755	28024755	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	28024755	28024755	A	G	SNP	EWSR1	NM_005243	human	genbank	54_36p	+1	reviewed	missense	c.1450	p.M484V	0.998	superfamily_RNA-binding domain RBD	HMMPfam_SVS_QK,superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_Znf265 first zinc-finger domain,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1	-	no_errors
ITGA11	22801	genome.wustl.edu	36	15	66441000	66441000	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	66441000	66441000	C	T	SNP	ITGA11	NM_001004439	human	genbank	54_36p	-1	reviewed	missense	c.454	p.V152M	0.984	superfamily_Integrin alpha N-terminal domain	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains	-	no_errors
TM6SF2	53345	genome.wustl.edu	36	19	19242885	19242885	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	19242885	19242885	C	A	SNP	TM6SF2	NM_001001524	human	genbank	54_36p	-1	validated	missense	c.145	p.V49L	0.002	NULL	NULL	-	no_errors
ASXL3	80816	genome.wustl.edu	36	18	29504747	29504747	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	29504747	29504747	C	G	SNP	ASXL3	NM_030632	human	genbank	54_36p	+1	validated	missense	c.590	p.P197R	1.000	NULL	NULL	-	no_errors
C1orf38	9473	genome.wustl.edu	36	1	28081589	28081589	+	Silent	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	28081589	28081589	C	T	SNP	C1orf38	NM_001105556	human	genbank	54_36p	+1	validated	silent	c.1167	p.D389	0.001	NULL	NULL	-	no_errors
KCNMA1	3778	genome.wustl.edu	36	10	78307595	78307595	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	78307595	78307595	G	T	SNP	KCNMA1	ENST00000404771	human	ensembl	54_36p	-1	known	missense	c.3586	p.P1196T	1.000	NULL	superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_NAD(P)-bd,HMMPfam_BK_channel_a,PatternScan_N6_MTASE	-	no_start_codon
COL4A6	1288	genome.wustl.edu	36	X	107321344	107321344	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	107321344	107321344	A	G	SNP	COL4A6	NM_001847	human	genbank	54_36p	-1	reviewed	missense	c.1259	p.I420T	0.002	NULL	HMMPfam_C4,HMMSmart_SM00111,HMMPfam_Collagen,superfamily_C-type lectin-like	-	no_errors
SPAG11B	10407	genome.wustl.edu	36	8	7307675	7307675	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	7307675	7307675	G	A	SNP	SPAG11B	NM_058201	human	genbank	54_36p	-1	reviewed	missense	c.178	p.R60W	0.002	HMMPfam_Sperm_Ag_HE2	HMMPfam_Sperm_Ag_HE2,HMMPfam_Defensin_beta	-	no_errors
SUPT5H	6829	genome.wustl.edu	36	19	44647331	44647331	+	Silent	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	44647331	44647331	C	T	SNP	SUPT5H	NM_003169	human	genbank	54_36p	+1	validated	silent	c.678	p.Y226	0.999	HMMPfam_Supt5,HMMSmart_SM00738	HMMPfam_Supt5,HMMPfam_KOW,HMMSmart_SM00739,HMMSmart_SM00738,superfamily_Translation proteins SH3-like domain	-	no_errors
OR2A4	79541	genome.wustl.edu	36	6	132064112	132064112	+	Silent	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	132064112	132064112	G	A	SNP	OR2A4	NM_030908	human	genbank	54_36p	-1	provisional	silent	c.123	p.N41	0.097	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
ATRIP	84126	genome.wustl.edu	36	3	48481283	48481283	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	48481283	48481283	G	A	SNP	ATRIP	NM_130384	human	genbank	54_36p	+1	reviewed	missense	c.2105	p.R702Q	0.696	NULL	NULL	-	no_errors
CCDC63	160762	genome.wustl.edu	36	12	109775639	109775639	+	Silent	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	109775639	109775639	G	A	SNP	CCDC63	NM_152591	human	genbank	54_36p	+1	provisional	silent	c.57	p.S19	0.001	NULL	NULL	-	no_errors
TBC1D3P2	440452	genome.wustl.edu	36	17	57706215	57706215	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	57706215	57706215	C	A	SNP	TBC1D3P2	ENST00000339120	human	ensembl	54_36p	-1	known	missense	c.44	p.R15L	0.038	NULL	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC	-	no_errors
OR52B4	143496	genome.wustl.edu	36	11	4345981	4345981	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	4345981	4345981	G	-	DEL	OR52B4	NM_001005161	human	genbank	54_36p	-1	provisional	frame_shift_del	c.121	p.L41fs	0.050	superfamily_SSF81321	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
CCDC105	126402	genome.wustl.edu	36	19	14994803	14994803	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	14994803	14994803	G	A	SNP	CCDC105	NM_173482	human	genbank	54_36p	+1	provisional	missense	c.1372	p.G458S	0.005	NULL	NULL	-	no_errors
FAM86C1	55199	genome.wustl.edu	36	11	71188280	71188280	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	71188280	71188280	G	A	SNP	FAM86C	NM_018172	human	genbank	54_36p	+1	validated	missense	c.437	p.R146Q	0.000	NULL	NULL	-	no_errors
FAM75A3	727830	genome.wustl.edu	36	9	40695785	40695785	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	40695785	40695785	G	A	SNP	FAM75A3	NM_001083124	human	genbank	54_36p	+1	predicted	missense	c.3442	p.V1148I	0.000	NULL	NULL	-	no_errors
KIR2DS1	3806	genome.wustl.edu	36	NT_113949	102175	102175	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113949	102175	102175	C	G	SNP	KIR2DS1	ENST00000400869	human	ensembl	54_36p	+1	known	missense	c.110	p.P37R	NULL	superfamily_SSF48726	superfamily_SSF48726,HMMPfam_ig,HMMSmart_IG	-	no_errors
AKAP12	9590	genome.wustl.edu	36	6	151712142	151712142	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	151712142	151712142	G	A	SNP	AKAP12	NM_005100	human	genbank	54_36p	+1	reviewed	missense	c.923	p.R308H	0.985	NULL	HMMPfam_WSK,HMMPfam_RII_binding_1	-	no_errors
KRT10	3858	genome.wustl.edu	36	17	36231988	36231988	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	36231988	36231988	C	T	SNP	KRT10	NM_000421	human	genbank	54_36p	-1	reviewed	missense	c.376	p.G126S	0.006	NULL	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors
PAMR1	25891	genome.wustl.edu	36	11	35430049	35430049	+	Silent	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	35430049	35430049	C	T	SNP	DKFZP586H2123	NM_015430	human	genbank	54_36p	-1	validated	silent	c.834	p.G278	0.940	superfamily_SSF57196	HMMSmart_EGF,superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB,superfamily_SSF57196,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	-	no_errors
C1QTNF3	114899	genome.wustl.edu	36	5	34056490	34056490	+	Silent	SNP	T	T	C			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	34056490	34056490	T	C	SNP	C1QTNF3	NM_181435	human	genbank	54_36p	-1	validated	silent	c.915	p.Q305	0.993	HMMSmart_C1Q,superfamily_TNF_like,HMMPfam_C1q	HMMPfam_Collagen,HMMSmart_C1Q,superfamily_TNF_like,HMMPfam_C1q	-	no_errors
INCA1	388324	genome.wustl.edu	36	17	4832900	4832900	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	4832900	4832900	C	G	SNP	INCA1	NM_213726	human	genbank	54_36p	-1	provisional	missense	c.414	p.E138D	0.002	NULL	NULL	-	no_errors
VSIG2	23584	genome.wustl.edu	36	11	124123556	124123556	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	124123556	124123556	A	G	SNP	VSIG2	NM_014312	human	genbank	54_36p	-1	provisional	missense	c.791	p.V264A	0.132	NULL	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig	-	no_errors
RBL2	5934	genome.wustl.edu	36	16	52072081	52072081	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	52072081	52072081	A	G	SNP	RBL2	NM_005611	human	genbank	54_36p	+1	validated	missense	c.2983	p.S995G	1.000	superfamily_Cyclin_like	HMMSmart_CYCLIN,HMMPfam_RB_A,superfamily_Cyclin_like,HMMPfam_RB_B	-	no_errors
MYADML	151325	genome.wustl.edu	36	2	33805359	33805362	+	RNA	DEL	AGAG	AGAG	-			TCGA-AB-2934-03A-01W-0745-08	TCGA-AB-2934-11A-01W-0745-08	AGAG	AGAG			AGAG	AGAG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	33805359	33805362	AGAG	-	DEL	MYADML	NR_003143	human	genbank	54_36p	-1	validated	rna	NULL	NULL	0.000:0.000:0.001:0.001	-	-	-	pseudogene
SARS	6301	genome.wustl.edu	36	1	109582013	109582013	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	109582013	109582013	A	G	SNP	SARS	NM_006513	human	genbank	54_36p	+1	reviewed	missense	c.1525	p.M509V	1.000	NULL	HMMPfam_Seryl_tRNA_N,superfamily_tRNA-binding arm,superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b	-	no_errors
KCTD9P2	643535	genome.wustl.edu	36	X	104537558	104537558	+	Silent	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	104537558	104537558	C	T	SNP	KCTD9P2	ENST00000313275	human	ensembl	54_36p	+1	known	silent	c.354	p.H118	1.000	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra	-	no_errors
BTN3A3	10384	genome.wustl.edu	36	6	26552354	26552354	+	Silent	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	26552354	26552354	G	A	SNP	BTN3A3	NM_006994	human	genbank	54_36p	+1	validated	silent	c.276	p.P92	0.002	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors
MT-CYB	0	genome.wustl.edu	36	MT	15651	15651	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	15651	15651	G	A	SNP	MT-CYB	ENST00000361789	human	ensembl	54_36p	+1	known	missense	c.904	p.A302T	NULL	HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C	HMMPfam_Cytochrom_B_N,HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C,superfamily_Transmembr_di-haem_cytochrome	-	no_stop_codon:bad_bp_length_for_coding_region
CCDC121	79635	genome.wustl.edu	36	2	27703433	27703434	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	TC	TC			TC	TC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	27703433	27703434	TC	-	DEL	CCDC121	NM_024584	human	genbank	54_36p	-1	validated	frame_shift_del	c.738_737	p.R246fs	0.000:0.000	NULL	NULL	-	no_errors
GLYATL1	92292	genome.wustl.edu	36	11	58467685	58467685	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	58467685	58467685	A	G	SNP	GLYATL1	NM_080661	human	genbank	54_36p	+1	provisional	missense	c.118	p.I40V	0.000	HMMPfam_Gly_acyl_tr_N	HMMPfam_Gly_acyl_tr_N,superfamily_Acyl_CoA_acyltransferase,HMMPfam_Gly_acyl_tr_C	-	no_errors
LOC342531	342531	genome.wustl.edu	36	17	6504026	6504026	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	6504026	6504026	G	T	SNP	LOC342531	XM_001715697	human	genbank	54_36p	+1	model	missense	c.311	p.S104I	0.005	superfamily_Lipoxigenase,HMMPfam_Lipoxygenase	superfamily_Lipoxigenase,HMMPfam_Lipoxygenase	-	pseudogene
SNX29P2	0	genome.wustl.edu	36	16	21304463	21304463	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	21304463	21304463	C	T	SNP	RUNDC2C	ENST00000324089	human	ensembl	54_36p	+1	known	missense	c.374	p.S125F	0.657	NULL	NULL	-	no_errors
CLIP3	25999	genome.wustl.edu	36	19	41198918	41198918	+	Silent	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	41198918	41198918	C	T	SNP	CLIP3	NM_015526	human	genbank	54_36p	-1	provisional	silent	c.1626	p.R542	1.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1	-	no_errors
CEACAM1	634	genome.wustl.edu	36	19	47705169	47705169	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	47705169	47705169	G	T	SNP	CEACAM1	NM_001712	human	genbank	54_36p	-1	reviewed	missense	c.1513	p.Q505K	0.000	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
HEG1	57493	genome.wustl.edu	36	3	126214379	126214379	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	126214379	126214379	T	A	SNP	HEG1	NM_020733	human	genbank	54_36p	-1	validated	missense	c.2734	p.T912S	0.003	NULL	superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors
ASAP3	55616	genome.wustl.edu	36	1	23633615	23633615	+	Silent	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	23633615	23633615	G	A	SNP	ASAP3	NM_017707	human	genbank	54_36p	-1	reviewed	silent	c.1833	p.N611	1.000	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	PatternScan_AIPM_HOMOCIT_SYNTH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
ABCG4	64137	genome.wustl.edu	36	11	118536561	118536561	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2934-03A-01W-0745-08	TCGA-AB-2934-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	118536561	118536561	A	G	SNP	ABCG4	NM_022169	human	genbank	54_36p	+1	reviewed	missense	c.1700	p.Y567C	1.000	HMMPfam_ABC2_membrane	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1,HMMPfam_ABC2_membrane	-	no_errors
PKHD1	5314	genome.wustl.edu	36	6	52031335	52031335	+	Silent	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	52031335	52031335	G	A	SNP	PKHD1	NM_138694	human	genbank	54_36p	-1	reviewed	silent	c.1257	p.V419	0.634	NULL	HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Pectin lyase-like,superfamily_E set domains,HMMPfam_G8	-	no_errors
ALDH1B1	219	genome.wustl.edu	36	9	38387044	38387044	+	Silent	SNP	G	G	C			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	38387044	38387044	G	C	SNP	ALDH1B1	NM_000692	human	genbank	54_36p	+1	reviewed	silent	c.1299	p.V433	0.969	superfamily_ALDH-like,HMMPfam_Aldedh	superfamily_ALDH-like,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS	-	no_errors
LILRA6	79168	genome.wustl.edu	36	19	59434712	59434712	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	59434712	59434712	C	G	SNP	LILRA6	NM_024318	human	genbank	54_36p	-1	validated	missense	c.1375	p.V459L	0.005	NULL	superfamily_SSF48726,HMMPfam_ig,HMMSmart_IG	-	no_errors
FBLIM1	54751	genome.wustl.edu	36	1	15973919	15973919	+	Missense_Mutation	SNP	G	G	A	rs76582916		TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	15973919	15973919	G	A	SNP	FBLIM1	NM_001024215	human	genbank	54_36p	+1	reviewed	missense	c.931	p.G311R	0.000	superfamily_SSF57716	superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors
NOMO1	23420	genome.wustl.edu	36	16	14896921	14896921	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	14896921	14896921	C	T	SNP	NOMO1	NM_014287	human	genbank	54_36p	+1	reviewed	missense	c.3587	p.A1196V	0.957	NULL	superfamily_Starch-binding domain-like,HMMPfam_Cna_B,superfamily_Carboxypeptidase regulatory domain	-	no_errors
ADAMTS12	81792	genome.wustl.edu	36	5	33927651	33927651	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	33927651	33927651	G	A	SNP	ADAMTS12	NM_030955	human	genbank	54_36p	-1	reviewed	missense	c.68	p.A23V	0.853	NULL	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
QRICH2	84074	genome.wustl.edu	36	17	71800160	71800162	+	In_Frame_Del	DEL	TGA	TGA	-			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	TGA	TGA			TGA	TGA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	71800160	71800162	TGA	-	DEL	QRICH2	NM_032134	human	genbank	54_36p	-1	provisional	in_frame_del	c.1745_1743	p.H581in_frame_del	0.012:0.018:0.017	NULL	NULL	-	no_errors
HPS4	89781	genome.wustl.edu	36	22	25196728	25196728	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	25196728	25196728	G	A	SNP	HPS4	NM_022081	human	genbank	54_36p	-1	reviewed	missense	c.553	p.R185C	1.000	NULL	NULL	-	no_errors
CR1L	1379	genome.wustl.edu	36	1	205937591	205937591	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	205937591	205937591	C	T	SNP	CR1L	NM_175710	human	genbank	54_36p	+1	validated	missense	c.983	p.T328M	0.000	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain,PatternScan_CARBOXYPEPT_ZN_2	-	no_errors
FCGR2C	9103	genome.wustl.edu	36	1	159826195	159826195	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	159826195	159826195	C	T	SNP	FCGR2C	NM_201563	human	genbank	54_36p	+1	provisional	missense	c.353	p.T118I	0.007	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	pseudogene
C12orf32	83695	genome.wustl.edu	36	12	2867629	2867629	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	2867629	2867629	C	G	SNP	C12orf32	ENST00000303648	human	ensembl	54_36p	+1	known	missense	c.460	p.P154A	0.717	NULL	NULL	-	no_errors
TNFRSF1A	7132	genome.wustl.edu	36	12	6312897	6312897	+	Silent	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	6312897	6312897	G	A	SNP	TNFRSF1A	NM_001065	human	genbank	54_36p	-1	reviewed	silent	c.369	p.T123	0.817	HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like	superfamily_TNF receptor-like,HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,PatternScan_EGF_2,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death	-	no_errors
TFR2	7036	genome.wustl.edu	36	7	100067374	100067374	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	100067374	100067374	C	T	SNP	TFR2	NM_003227	human	genbank	54_36p	-1	reviewed	missense	c.1097	p.R366H	0.222	superfamily_Transferrin receptor ectodomain apical domain,superfamily_Zn-dependent exopeptidases	superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M28,superfamily_Transferrin receptor ectodomain C-terminal domain,HMMPfam_TFR_dimer	-	no_errors
KIF6	221458	genome.wustl.edu	36	6	39506909	39506909	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	39506909	39506909	C	T	SNP	KIF6	NM_145027	human	genbank	54_36p	-1	validated	missense	c.1652	p.R551K	0.999	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
SPG11	80208	genome.wustl.edu	36	15	42713032	42713032	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	42713032	42713032	A	C	SNP	SPG11	NM_025137	human	genbank	54_36p	-1	reviewed	missense	c.1698	p.D566E	0.006	NULL	PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors
MFAP4	4239	genome.wustl.edu	36	17	19229060	19229060	+	Silent	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	19229060	19229060	G	A	SNP	MFAP4	NM_002404	human	genbank	54_36p	-1	reviewed	silent	c.465	p.S155	0.041	HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like	HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like	-	no_errors
OR52L2P	79274	genome.wustl.edu	36	11	6035576	6035576	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	6035576	6035576	C	T	SNP	OR52L2P	ENST00000316540	human	ensembl	54_36p	-1	known	missense	c.506	p.R169Q	0.101	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
ENSG00000204661	0	genome.wustl.edu	36	5	179002518	179002518	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	179002518	179002518	C	T	SNP	ENSG00000204661	ENST00000376976	human	ensembl	54_36p	-1	known	missense	c.122	p.S41N	0.000	NULL	NULL	-	no_errors
TG	7038	genome.wustl.edu	36	8	134111294	134111294	+	Silent	SNP	G	G	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	134111294	134111294	G	T	SNP	TG	NM_003235	human	genbank	54_36p	+1	validated	silent	c.7083	p.A2361	0.994	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases	superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_TNF receptor-like,HMMPfam_GCC2_GCC3,HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2	-	no_errors
SLC22A1	6580	genome.wustl.edu	36	6	160480871	160480873	+	In_Frame_Del	DEL	ATG	ATG	-			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	ATG	ATG			ATG	ATG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	160480871	160480873	ATG	-	DEL	SLC22A1	NM_003057	human	genbank	54_36p	+1	reviewed	in_frame_del	c.1258_1260	p.M420in_frame_del	0.379:0.390:0.278	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter,PatternScan_SUGAR_TRANSPORT_1	-	no_errors
AP3S1	1176	genome.wustl.edu	36	5	115230317	115230320	+	Frame_Shift_Del	DEL	AAGA	AAGA	-			TCGA-AB-2934-03A-01W-0745-08	TCGA-AB-2934-11A-01W-0745-08	AAGA	AAGA			AAGA	AAGA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	115230317	115230320	AAGA	-	DEL	AP3S1	NM_001284	human	genbank	54_36p	+1	validated	frame_shift_del	c.121_124	p.K41fs	1.000:1.000:1.000:1.000	HMMPfam_Clat_adaptor_s,superfamily_SNARE-like	HMMPfam_Clat_adaptor_s,PatternScan_CLAT_ADAPTOR_S,superfamily_SNARE-like	-	no_errors
ENPP6	133121	genome.wustl.edu	36	4	185276008	185276008	+	Silent	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	185276008	185276008	G	A	SNP	ENPP6	NM_153343	human	genbank	54_36p	-1	validated	silent	c.573	p.R191	1.000	superfamily_Alkaline_phosphatase_core,HMMPfam_Phosphodiest	superfamily_Alkaline_phosphatase_core,HMMPfam_Phosphodiest	-	no_errors
POGK	57645	genome.wustl.edu	36	1	165082558	165082558	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	165082558	165082558	G	A	SNP	POGK	NM_017542	human	genbank	54_36p	+1	reviewed	missense	c.218	p.R73Q	1.000	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMPfam_BrkDBD,superfamily_Homeodomain-like,HMMPfam_CenpB-DNA-bind,HMMSmart_SM00674,HMMPfam_DDE	-	no_errors
KCNH2	3757	genome.wustl.edu	36	7	150280827	150280827	+	Silent	SNP	T	T	G			TCGA-AB-2934-03A-01W-0745-08	TCGA-AB-2934-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	150280827	150280827	T	G	SNP	KCNH2	NM_000238	human	genbank	54_36p	-1	reviewed	silent	c.1176	p.A392	0.899	NULL	HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMSmart_SM00086,HMMPfam_Ion_trans,HMMPfam_PAS,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels	-	no_errors
FKBP9L	360132	genome.wustl.edu	36	7	55720413	55720413	+	Silent	SNP	G	G	C			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	55720413	55720413	G	C	SNP	FKBP9L	ENST00000324256	human	ensembl	54_36p	-1	known	silent	c.198	p.P66	1.000	superfamily_SSF47473,HMMSmart_EFh	HMMPfam_FKBP_C,superfamily_SSF54534,superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1,PatternScan_ER_TARGET	-	no_errors
SHANK1	50944	genome.wustl.edu	36	19	55899512	55899512	+	Silent	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	55899512	55899512	G	A	SNP	SHANK1	NM_016148	human	genbank	54_36p	-1	validated	silent	c.1149	p.P383	0.868	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_SAM/Pointed domain,HMMPfam_SH3_2	-	no_errors
ENSG00000215614	0	genome.wustl.edu	36	NT_113923	51309	51311	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-AB-2934-03A-01W-0745-08	TCGA-AB-2934-11A-01W-0745-08	AAG	AAG			AAG	AAG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113923	51309	51311	AAG	-	DEL	ENSG00000215614	ENST00000400675	human	ensembl	54_36p	+1	known	in_frame_del	c.175_177	p.K61in_frame_del	NULL	HMMPfam_RFPL3_antisense	HMMPfam_RFPL3_antisense	-	no_start_codon:no_stop_codon
MTMR2	8898	genome.wustl.edu	36	11	95208179	95208179	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	95208179	95208179	A	G	SNP	MTMR2	NM_016156	human	genbank	54_36p	-1	reviewed	missense	c.1855	p.S619P	0.996	NULL	HMMSmart_GRAM,superfamily_SSF50729,HMMPfam_GRAM,superfamily_SSF52799,HMMPfam_Myotub-related,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
GYPC	2995	genome.wustl.edu	36	2	127167984	127167984	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	127167984	127167984	G	A	SNP	GYPC	NM_002101	human	genbank	54_36p	+1	reviewed	missense	c.181	p.V61I	0.461	NULL	HMMSmart_SM00294	-	no_errors
RIMBP3B	440804	genome.wustl.edu	36	22	20072819	20072819	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	20072819	20072819	G	A	SNP	RIMBP3B	ENST00000357029	human	ensembl	54_36p	+1	known	missense	c.4390	p.V1464M	0.000	NULL	HMMSmart_SH3,superfamily_SH3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_SH3_2	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25318080	25318080	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2934-03A-01W-0745-08	TCGA-AB-2934-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25318080	25318080	C	A	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.1937	p.G646V	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
FHOD1	29109	genome.wustl.edu	36	16	65825509	65825509	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	65825509	65825509	G	A	SNP	FHOD1	NM_013241	human	genbank	54_36p	-1	reviewed	missense	c.1598	p.P533L	0.004	NULL	superfamily_ARM-type_fold,superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2	-	no_errors
IQCH	64799	genome.wustl.edu	36	15	65544593	65544593	+	Silent	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	65544593	65544593	C	T	SNP	IQCH	NM_001031715	human	genbank	54_36p	+1	provisional	silent	c.2580	p.N860	0.889	NULL	HMMPfam_IQ	-	no_errors
LOC388813	388813	genome.wustl.edu	36	21	14903689	14903689	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0745-08	TCGA-AB-2934-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	14903689	14903689	G	A	SNP	LOC388813	XM_373925	human	genbank	54_36p	-1	model	missense	c.274	p.P92S	0.999	NULL	NULL	-	no_errors
ALG12	79087	genome.wustl.edu	36	22	48683489	48683489	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	48683489	48683489	C	G	SNP	ALG12	ENST00000332276	human	ensembl	54_36p	-1	known	missense	c.401	p.R134T	0.289	NULL	NULL	-	no_errors
LOC100129667	100129667	genome.wustl.edu	36	8	54787917	54787917	+	RNA	SNP	C	C	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	54787917	54787917	C	G	SNP	LOC100129667	XR_037850	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
SLC7A13	157724	genome.wustl.edu	36	8	87311256	87311256	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	87311256	87311256	A	G	SNP	SLC7A13	NM_138817	human	genbank	54_36p	-1	validated	missense	c.367	p.F123L	0.998	NULL	HMMPfam_AA_permease	-	no_errors
COL5A3	50509	genome.wustl.edu	36	19	9952500	9952500	+	Silent	SNP	T	T	C			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	9952500	9952500	T	C	SNP	COL5A3	NM_015719	human	genbank	54_36p	-1	reviewed	silent	c.2541	p.T847	0.990	HMMPfam_Collagen	HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
LILRA6	79168	genome.wustl.edu	36	19	59437919	59437919	+	Silent	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	59437919	59437919	C	T	SNP	LILRA6	NM_024318	human	genbank	54_36p	-1	validated	silent	c.150	p.Q50	0.811	HMMPfam_ig,superfamily_SSF48726	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	-	no_errors
SEC14L3	266629	genome.wustl.edu	36	22	29196053	29196053	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	29196053	29196053	G	A	SNP	SEC14L3	NM_174975	human	genbank	54_36p	-1	reviewed	missense	c.187	p.R63W	1.000	HMMPfam_CRAL_TRIO_N,superfamily_Sec14p_like_N	HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C,HMMPfam_CRAL_TRIO_N,superfamily_Sec14p_like_N,superfamily_SSF101576	-	no_errors
OR52N1	79473	genome.wustl.edu	36	11	5766383	5766383	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	5766383	5766383	A	-	DEL	OR52N1	NM_001001913	human	genbank	54_36p	-1	provisional	frame_shift_del	c.240	p.N82fs	0.343	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
SORBS3	10174	genome.wustl.edu	36	8	22477781	22477781	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	22477781	22477781	A	G	SNP	SORBS3	NM_005775	human	genbank	54_36p	+1	validated	missense	c.716	p.E239G	0.995	NULL	HMMSmart_SM00459,HMMPfam_Sorb,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
BHLHB9	80823	genome.wustl.edu	36	X	101890789	101890789	+	Silent	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	101890789	101890789	G	A	SNP	BHLHB9	NM_030639	human	genbank	54_36p	+1	validated	silent	c.210	p.T70	0.000	NULL	superfamily_ARM-type_fold,HMMPfam_DUF634	-	no_errors
C20orf160	140706	genome.wustl.edu	36	20	30066436	30066436	+	Silent	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	30066436	30066436	C	T	SNP	C20orf160	NM_080625	human	genbank	54_36p	+1	validated	silent	c.99	p.S33	0.803	NULL	NULL	-	no_errors
DZIP1L	199221	genome.wustl.edu	36	3	139269731	139269731	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	139269731	139269731	C	T	SNP	DZIP1L	NM_173543	human	genbank	54_36p	-1	provisional	missense	c.1784	p.G595E	0.015	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LILRB2	10288	genome.wustl.edu	36	19	59474632	59474632	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	59474632	59474632	G	A	SNP	LILRB2	NM_005874	human	genbank	54_36p	-1	reviewed	missense	c.802	p.P268S	0.000	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
RNF10	9921	genome.wustl.edu	36	12	119487332	119487332	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	119487332	119487332	G	C	SNP	RNF10	NM_014868	human	genbank	54_36p	+1	reviewed	missense	c.1740	p.L580F	0.967	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors
HOXC6	3223	genome.wustl.edu	36	12	52709830	52709830	+	Silent	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	52709830	52709830	C	T	SNP	HOXC6	NM_004503	human	genbank	54_36p	+1	reviewed	silent	c.525	p.A175	1.000	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	PatternScan_ANTENNAPEDIA,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
PYGL	5836	genome.wustl.edu	36	14	50448341	50448341	+	Splice_Site	DEL	T	T	-			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	50448341	50448341	T	-	DEL	PYGL	NM_002863	human	genbank	54_36p	-1	validated	splice_site_del	c.1828-2	e16-2	1.000	-	-	-	no_errors
TAF1	6872	genome.wustl.edu	36	X	70597285	70597285	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	70597285	70597285	A	G	SNP	TAF1	NM_004606	human	genbank	54_36p	+1	reviewed	missense	c.5366	p.N1789S	1.000	NULL	HMMPfam_TBP-binding,superfamily_TAF_II_230,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
ASMT	438	genome.wustl.edu	36	X	1721733	1721733	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	1721733	1721733	A	T	SNP	ASMT	NM_004043	human	genbank	54_36p	+1	validated	missense	c.948	p.E316D	0.998	HMMPfam_Methyltransf_2,superfamily_SSF53335	superfamily_SSF46785,HMMPfam_Methyltransf_2,superfamily_SSF53335	-	no_errors
CEP350	9857	genome.wustl.edu	36	1	178310927	178310927	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	178310927	178310927	A	G	SNP	CEP350	NM_014810	human	genbank	54_36p	+1	reviewed	missense	c.5712	p.I1904M	0.091	NULL	superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1	-	no_errors
ZNF492	57615	genome.wustl.edu	36	19	22609118	22609118	+	Splice_Site	DEL	T	T	-			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	22609118	22609118	T	-	DEL	ZNF492	NM_020855	human	genbank	54_36p	+1	validated	splice_site_del	c.1+2	e0+2	0.000	-	-	-	no_errors
UPF3A	65110	genome.wustl.edu	36	13	114085521	114085521	+	Silent	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	114085521	114085521	G	A	SNP	UPF3A	NM_023011	human	genbank	54_36p	+1	reviewed	silent	c.1221	p.P407	0.031	NULL	HMMPfam_Smg4_UPF3,superfamily_RNA-binding domain RBD	-	no_errors
OR51E1	143503	genome.wustl.edu	36	11	4630919	4630919	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	4630919	4630919	G	A	SNP	OR51E1	NM_152430	human	genbank	54_36p	+1	validated	missense	c.584	p.R195Q	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
SLC6A20	54716	genome.wustl.edu	36	3	45787868	45787868	+	Silent	SNP	G	G	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	45787868	45787868	G	T	SNP	SLC6A20	NM_020208	human	genbank	54_36p	-1	reviewed	silent	c.780	p.I260	1.000	HMMPfam_SNF	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2	-	no_errors
ANXA2P2	304	genome.wustl.edu	36	9	33614490	33614492	+	RNA	DEL	CTC	CTC	-			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	CTC	CTC			CTC	CTC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	33614490	33614492	CTC	-	DEL	ANXA2P2	NR_003573	human	genbank	54_36p	+1	validated	rna	NULL	NULL	0.980:0.979:0.981	-	-	-	pseudogene
FAM158A	51016	genome.wustl.edu	36	14	23678075	23678075	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	23678075	23678075	C	T	SNP	FAM158A	NM_016049	human	genbank	54_36p	-1	predicted	missense	c.611	p.G204E	1.000	NULL	HMMPfam_UPF0172	-	no_errors
KRT6B	3854	genome.wustl.edu	36	12	51131841	51131841	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	51131841	51131841	C	T	SNP	KRT6B	NM_005555	human	genbank	54_36p	-1	reviewed	missense	c.289	p.G97R	0.084	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors
TGM7	116179	genome.wustl.edu	36	15	41358755	41358755	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	41358755	41358755	G	A	SNP	TGM7	NM_052955	human	genbank	54_36p	-1	validated	missense	c.1691	p.P564L	0.719	superfamily_Transglut_C,HMMPfam_Transglut_C	superfamily_Ig_E-set,HMMPfam_Transglut_N,superfamily_SSF54001,HMMSmart_TGc,HMMPfam_Transglut_core,PatternScan_TRANSGLUTAMINASES,superfamily_Transglut_C,HMMPfam_Transglut_C	-	no_errors
KLHL22	84861	genome.wustl.edu	36	22	19130848	19130848	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	19130848	19130848	T	C	SNP	KLHL22	NM_032775	human	genbank	54_36p	-1	validated	missense	c.1421	p.H474R	0.010	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1	-	no_errors
CEP164	22897	genome.wustl.edu	36	11	116737915	116737915	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	116737915	116737915	T	A	SNP	CEP164	NM_014956	human	genbank	54_36p	+1	validated	missense	c.548	p.M183K	0.000	NULL	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW	-	no_errors
NLGN4X	57502	genome.wustl.edu	36	X	5821308	5821308	+	Silent	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	5821308	5821308	G	A	SNP	NLGN4X	NM_020742	human	genbank	54_36p	-1	reviewed	silent	c.2001	p.T667	1.000	NULL	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2	-	no_errors
GPR110	266977	genome.wustl.edu	36	6	47085201	47085201	+	Silent	SNP	A	A	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	47085201	47085201	A	T	SNP	GPR110	NM_153840	human	genbank	54_36p	-1	validated	silent	c.1929	p.V643	0.105	HMMPfam_7tm_2	HMMPfam_SEA,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,superfamily_SEA domain	-	no_errors
HSPG2	3339	genome.wustl.edu	36	1	22086329	22086329	+	Silent	SNP	A	A	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	22086329	22086329	A	G	SNP	HSPG2	NM_005529	human	genbank	54_36p	-1	validated	silent	c.1044	p.F348	0.999	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module	HMMPfam_Laminin_B,HMMPfam_SEA,HMMSmart_SM00200,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,HMMSmart_SM00281,superfamily_Immunoglobulin,superfamily_EGF/Laminin	-	no_errors
SLFN13	146857	genome.wustl.edu	36	17	30796663	30796663	+	Silent	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	30796663	30796663	C	T	SNP	SLFN13	NM_144682	human	genbank	54_36p	-1	validated	silent	c.150	p.A50	0.006	NULL	HMMPfam_AAA_4,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
IGSF10	285313	genome.wustl.edu	36	3	152659080	152659080	+	Silent	SNP	A	A	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	152659080	152659080	A	G	SNP	IGSF10	NM_178822	human	genbank	54_36p	-1	provisional	silent	c.108	p.Y36	0.694	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like	HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00082,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
ENSG00000216522	0	genome.wustl.edu	36	NT_113923	90158	90158	+	Silent	SNP	A	A	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113923	90158	90158	A	G	SNP	ENSG00000216522	ENST00000402757	human	ensembl	54_36p	-1	known	silent	c.651	p.Y217	NULL	HMMPfam_G_glu_transpept	HMMPfam_G_glu_transpept,PatternScan_G_GLU_TRANSPEPTIDASE	-	no_errors
FAM74A3	728495	genome.wustl.edu	36	9	40705999	40705999	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	40705999	40705999	G	T	SNP	FAM74A3	ENST00000377629	human	ensembl	54_36p	+1	known	missense	c.151	p.V51F	0.982	NULL	NULL	-	no_errors
MLL2	8085	genome.wustl.edu	36	12	47712727	47712727	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	47712727	47712727	A	G	SNP	MLL2	NM_003482	human	genbank	54_36p	-1	validated	missense	c.12028	p.S4010P	0.072	NULL	HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,PatternScan_RECOMBINASES_2,superfamily_HMG-box,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain	-	no_errors
LOC729901	729901	genome.wustl.edu	36	11	41334825	41334825	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2934-03A-01W-0745-08	TCGA-AB-2934-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	41334825	41334825	T	G	SNP	LOC729901	XM_001717969	human	genbank	54_36p	+1	model	missense	c.545	p.V182G	0.000	NULL	NULL	-	no_start_codon:pseudogene
LOC389901	389901	genome.wustl.edu	36	X	149151331	149151331	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	149151331	149151331	G	A	SNP	LOC389901	XM_001721068	human	genbank	54_36p	-1	model	missense	c.46	p.R16C	1.000	superfamily_vWA-like,HMMPfam_Ku_N	superfamily_vWA-like,HMMPfam_Ku_N,superfamily_SPOC domain-like,HMMPfam_Ku,HMMSmart_SM00559,HMMPfam_Ku_C,superfamily_SAP domain,HMMPfam_SAP,HMMSmart_SM00513	-	no_errors
ADAM21P1	145241	genome.wustl.edu	36	14	69783844	69783844	+	RNA	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	69783844	69783844	C	T	SNP	ADAM21P	NR_003951	human	genbank	54_36p	-1	validated	rna	NULL	NULL	0.001	-	-	-	pseudogene
NFKB2	4791	genome.wustl.edu	36	10	104151000	104151000	+	Silent	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	104151000	104151000	G	A	SNP	NFKB2	NM_001077494	human	genbank	54_36p	+1	validated	silent	c.2145	p.S715	0.361	NULL	superfamily_p53-like transcription factors,HMMPfam_RHD,PatternScan_REL_1,superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death	-	no_errors
MYEOV2	150678	genome.wustl.edu	36	2	240714874	240714874	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	240714874	240714874	C	T	SNP	MYEOV2	NM_138336	human	genbank	54_36p	-1	predicted	missense	c.538	p.G180R	0.001	NULL	NULL	-	no_errors
SLC28A1	9154	genome.wustl.edu	36	15	83239315	83239316	+	In_Frame_Ins	INS	-	-	TTG			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	83239315	83239316	-	TTG	INS	SLC28A1	NM_004213	human	genbank	54_36p	+1	validated	in_frame_ins	c.418_419	p.141in_frame_insV	0.000:0.001	NULL	HMMPfam_Nucleos_tra2_N,HMMPfam_Gate,HMMPfam_Nucleos_tra2_C	-	no_errors
RNASEL	6041	genome.wustl.edu	36	1	180822276	180822276	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	180822276	180822276	T	G	SNP	RNASEL	NM_021133	human	genbank	54_36p	-1	reviewed	missense	c.289	p.I97L	0.998	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Ribonuc_2-5A,HMMSmart_SM00580	-	no_errors
M6PR	4074	genome.wustl.edu	36	12	8990262	8990263	+	In_Frame_Ins	INS	-	-	AAC			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	8990262	8990263	-	AAC	INS	M6PR	NM_002355	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.6_5	p.2in_frame_insL	0.946:0.971	HMMPfam_Man-6-P_recep	HMMPfam_Man-6-P_recep,superfamily_Mannose 6-phosphate receptor domain	-	no_errors
LOXHD1	125336	genome.wustl.edu	36	18	42363145	42363145	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	42363145	42363145	C	T	SNP	LOXHD1	ENST00000398722	human	ensembl	54_36p	-1	known	missense	c.3689	p.R1230K	0.988	superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308	superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308	-	no_errors
ATG4D	84971	genome.wustl.edu	36	19	10524569	10524571	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	CTC	CTC			CTC	CTC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	10524569	10524571	CTC	-	DEL	ATG4D	NM_032885	human	genbank	54_36p	+1	reviewed	in_frame_del	c.1251_1253	p.S420in_frame_del	1.000:1.000:0.996	NULL	HMMPfam_Peptidase_C54	-	no_errors
DIP2A	23181	genome.wustl.edu	36	21	46748732	46748732	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	46748732	46748732	C	T	SNP	DIP2A	NM_015151	human	genbank	54_36p	+1	reviewed	missense	c.686	p.T229M	0.994	NULL	HMMPfam_DMAP_binding,superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding	-	no_errors
TCEB3B	51224	genome.wustl.edu	36	18	42813728	42813728	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	42813728	42813728	C	T	SNP	TCEB3B	NM_016427	human	genbank	54_36p	-1	reviewed	missense	c.1906	p.G636S	0.194	HMMPfam_Elongin_A	HMMPfam_TFIIS,HMMSmart_TFS2N,HMMPfam_Elongin_A	-	no_errors
IDH2	3418	genome.wustl.edu	36	15	88432938	88432938	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Verified	Valid	Somatic		Capture				Illumina GAIIx	15	88432938	88432938	C	T	SNP	IDH2					-1	reviewed	missense	c.419	p.R140Q	1	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	NA
ENSG00000197320	0	genome.wustl.edu	36	7	9734336	9734336	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	9734336	9734336	T	G	SNP	ENSG00000197320	ENST00000361014	human	ensembl	54_36p	+1	known	missense	c.1300	p.W434G	1.000	NULL	HMMPfam_A2M_N	-	no_stop_codon
MAGEC3	139081	genome.wustl.edu	36	X	140812909	140812909	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	140812909	140812909	G	T	SNP	MAGEC3	NM_138702	human	genbank	54_36p	+1	reviewed	missense	c.1699	p.V567F	0.000	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
SPDYE1	285955	genome.wustl.edu	36	7	44013591	44013591	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	44013591	44013591	T	C	SNP	SPDYE1	NM_175064	human	genbank	54_36p	+1	validated	missense	c.832	p.C278R	0.000	NULL	NULL	-	no_errors
ALLC	55821	genome.wustl.edu	36	2	3707126	3707126	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	3707126	3707126	G	T	SNP	ALLC	NM_018436	human	genbank	54_36p	+1	validated	missense	c.326	p.G109V	0.761	superfamily_Gal_bind_like,HMMPfam_Allantoicase	superfamily_Gal_bind_like,HMMPfam_Allantoicase	-	no_errors
ENSG00000216522	0	genome.wustl.edu	36	NT_113923	83233	83233	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113923	83233	83233	C	T	SNP	ENSG00000216522	ENST00000402757	human	ensembl	54_36p	-1	known	missense	c.1243	p.G415R	NULL	HMMPfam_G_glu_transpept	HMMPfam_G_glu_transpept,PatternScan_G_GLU_TRANSPEPTIDASE	-	no_errors
UXS1	80146	genome.wustl.edu	36	2	106128238	106128238	+	Silent	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	106128238	106128238	G	A	SNP	UXS1	NM_025076	human	genbank	54_36p	-1	validated	silent	c.297	p.F99	0.996	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Epimerase	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Epimerase	-	no_errors
IL32	9235	genome.wustl.edu	36	16	3055811	3055811	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	3055811	3055811	G	A	SNP	IL32	ENST00000008180	human	ensembl	54_36p	+1	known	missense	c.79	p.A27T	0.000	NULL	NULL	-	no_start_codon
FAM75A6	389730	genome.wustl.edu	36	9	43565378	43565378	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	43565378	43565378	G	A	SNP	FAM75A6	ENST00000332857	human	ensembl	54_36p	-1	known	missense	c.3305	p.P1102L	0.004	NULL	NULL	-	no_errors
SFI1	9814	genome.wustl.edu	36	22	30301351	30301351	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	30301351	30301351	C	T	SNP	SFI1	NM_001007467	human	genbank	54_36p	+1	validated	missense	c.1057	p.R353W	0.902	NULL	NULL	-	no_errors
LRIG1	26018	genome.wustl.edu	36	3	66550260	66550260	+	Silent	SNP	T	T	C			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	66550260	66550260	T	C	SNP	LRIG1	NM_015541	human	genbank	54_36p	-1	validated	silent	c.486	p.G162	0.686	superfamily_L domain-like	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRCT,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	-	no_errors
USP9X	8239	genome.wustl.edu	36	X	40912333	40912334	+	Frame_Shift_Ins	INS	-	-	CG			TCGA-AB-2934-03A-01W-0745-08	TCGA-AB-2934-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	40912333	40912334	-	CG	INS	USP9X	NM_001039590	human	genbank	54_36p	+1	reviewed	frame_shift_ins	c.2554_2555	p.R852fs	1.000:1.000	NULL	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
BCAM	4059	genome.wustl.edu	36	19	50014156	50014156	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	50014156	50014156	C	T	SNP	BCAM	NM_005581	human	genbank	54_36p	+1	reviewed	missense	c.1340	p.S447L	0.001	superfamily_SSF48726	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_C2-set_2,HMMSmart_IGc2,HMMPfam_ig	-	no_errors
TRIM46	80128	genome.wustl.edu	36	1	153415144	153415144	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	153415144	153415144	G	A	SNP	TRIM46	NM_025058	human	genbank	54_36p	+1	validated	missense	c.482	p.R161H	1.000	superfamily_RING/U-box	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain,HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors
AZIN1	51582	genome.wustl.edu	36	8	103921153	103921153	+	Silent	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	103921153	103921153	C	T	SNP	AZIN1	NM_015878	human	genbank	54_36p	-1	reviewed	silent	c.177	p.V59	1.000	HMMPfam_Orn_Arg_deC_N,superfamily_SSF51419	PatternScan_ODR_DC_2_1,HMMPfam_Orn_Arg_deC_N,superfamily_SSF51419,PatternScan_ODR_DC_2_2,superfamily_Racem_decarbox_C,HMMPfam_Orn_DAP_Arg_deC	-	no_errors
ENSG00000216522	0	genome.wustl.edu	36	NT_113923	82788	82788	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113923	82788	82788	G	A	SNP	ENSG00000216522	ENST00000402757	human	ensembl	54_36p	-1	known	missense	c.1510	p.H504Y	NULL	HMMPfam_G_glu_transpept	HMMPfam_G_glu_transpept,PatternScan_G_GLU_TRANSPEPTIDASE	-	no_errors
SEC14L3	266629	genome.wustl.edu	36	22	29187329	29187329	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	29187329	29187329	T	A	SNP	SEC14L3	NM_174975	human	genbank	54_36p	-1	reviewed	missense	c.1049	p.D350V	0.999	superfamily_SSF101576	superfamily_Sec14p_like_N,HMMPfam_CRAL_TRIO_N,HMMSmart_SEC14,superfamily_CRAL_TRIO_C,HMMPfam_CRAL_TRIO,superfamily_SSF101576	-	no_errors
ENSG00000206750	0	genome.wustl.edu	36	NT_113930	81524	81524	+	RNA	SNP	A	A	G			TCGA-AB-2934-03A-01W-0745-08	TCGA-AB-2934-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113930	81524	81524	A	G	SNP	ENSG00000206750	ENST00000384023	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
BTN3A3	10384	genome.wustl.edu	36	6	26560190	26560190	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	26560190	26560190	C	T	SNP	BTN3A3	NM_006994	human	genbank	54_36p	+1	validated	missense	c.1327	p.R443W	0.000	HMMPfam_SPRY,HMMSmart_SPRY	HMMSmart_IG,HMMPfam_SPRY,HMMSmart_PRY,HMMPfam_V-set,HMMSmart_SPRY,superfamily_SSF48726	-	no_errors
LOC100129866	100129866	genome.wustl.edu	36	1	156690630	156690630	+	RNA	SNP	C	C	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	156690630	156690630	C	G	SNP	LOC100129866	XR_037993	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.176	-	-	-	pseudogene
IGLV4-60	28785	genome.wustl.edu	36	22	20846884	20846884	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	20846884	20846884	C	-	DEL	IGLV4-60	ENST00000390284	human	ensembl	54_36p	+1	known	frame_shift_del	c.172	p.Q58fs	0.986	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region
MS4A8B	83661	genome.wustl.edu	36	11	60239136	60239136	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	60239136	60239136	G	C	SNP	MS4A8B	NM_031457	human	genbank	54_36p	+1	reviewed	missense	c.601	p.A201P	0.000	HMMPfam_CD20	HMMPfam_CD20	-	no_errors
CYP2A7	1549	genome.wustl.edu	36	19	46074955	46074955	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	46074955	46074955	G	A	SNP	CYP2A7	NM_000764	human	genbank	54_36p	-1	reviewed	missense	c.1141	p.R381W	0.015	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
TMEM131	23505	genome.wustl.edu	36	2	97740274	97740274	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	97740274	97740274	A	T	SNP	TMEM131	NM_015348	human	genbank	54_36p	-1	validated	missense	c.5372	p.V1791D	0.991	NULL	NULL	-	no_errors
MKI67	4288	genome.wustl.edu	36	10	129796406	129796408	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	GCT	GCT			GCT	GCT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	129796406	129796408	GCT	-	DEL	MKI67	NM_002417	human	genbank	54_36p	-1	reviewed	in_frame_del	c.3688_3686	p.EL1229in_frame_delV	0.521:0.065:0.053	HMMPfam_K167R	superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,HMMPfam_K167R	-	no_errors
LOC100130127	100130127	genome.wustl.edu	36	10	5858245	5858245	+	RNA	SNP	C	C	T			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	5858245	5858245	C	T	SNP	LOC100130127	XR_038204	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.996	-	-	-	pseudogene
MAGEA11	4110	genome.wustl.edu	36	X	148576979	148576979	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	148576979	148576979	T	G	SNP	MAGEA11	NM_005366	human	genbank	54_36p	-1	reviewed	missense	c.280	p.I94L	0.001	NULL	HMMPfam_MAGE	-	no_errors
ENSG00000221734	0	genome.wustl.edu	36	9	116594310	116594310	+	RNA	SNP	A	A	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	116594310	116594310	A	G	SNP	ENSG00000221734	ENST00000408807	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
LAT2	7462	genome.wustl.edu	36	7	73269113	73269113	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	73269113	73269113	C	G	SNP	LAT2	NM_014146	human	genbank	54_36p	+1	reviewed	missense	c.117	p.I39M	1.000	NULL	NULL	-	no_errors
ZDHHC11	79844	genome.wustl.edu	36	5	854252	854252	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2934-03A-01W-0745-08	TCGA-AB-2934-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	854252	854252	C	T	SNP	ZDHHC11	NM_024786	human	genbank	54_36p	-1	validated	missense	c.1209	p.M403I	0.000	NULL	HMMPfam_zf-DHHC	-	no_errors
MT-CYB	0	genome.wustl.edu	36	MT	14767	14767	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2934-03A-01W-0755-09	TCGA-AB-2934-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	14767	14767	T	C	SNP	MT-CYB	ENST00000361789	human	ensembl	54_36p	+1	known	missense	c.20	p.I7T	NULL	superfamily_Transmembr_di-haem_cytochrome	superfamily_Transmembr_di-haem_cytochrome,HMMPfam_Cytochrom_B_N,HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C	-	no_stop_codon:bad_bp_length_for_coding_region
