Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
RIN2	54453	genome.wustl.edu	36	20	19904215	19904215	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	20	19904215	19904215	C	T	SNP	RIN2	NM_018993	human	genbank	54_36p	+1	reviewed	missense	c.1546	p.R516C	0.801	NULL	superfamily_SH2 domain,superfamily_VPS9 domain (Pfam 02204),HMMSmart_SM00167,HMMPfam_VPS9,HMMPfam_RA,HMMSmart_SM00314	-	no_errors
FLJ43860	389690	genome.wustl.edu	36	8	142569527	142569527	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	8	142569527	142569527	C	T	SNP	FLJ43860	NM_207414	human	genbank	54_36p	-1	validated	missense	c.569	p.S190N	0.989	NULL	HMMPfam_HEAT,superfamily_ARM repeat	-	pseudogene
MT-CO2	0	genome.wustl.edu	36	MT	7622	7622	+	Silent	SNP	T	T	C			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	MT	7622	7622	T	C	SNP	MT-CO2	ENST00000361739	human	ensembl	54_36p	+1	known	silent	c.36	p.A12	NULL	HMMPfam_COX2_TM,superfamily_Cytochrome c oxidase subunit II-like transmembrane region	HMMPfam_COX2_TM,superfamily_Cytochrome c oxidase subunit II-like transmembrane region,superfamily_Cupredoxins,HMMPfam_COX2,PatternScan_COX2	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518263	7518263	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	17	7518263	7518263	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.743	p.R248Q	1.000	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
ALOX5	240	genome.wustl.edu	36	10	45258945	45258945	+	Silent	SNP	C	C	T			TCGA-AB-2935-03A-01W-0745-08	TCGA-AB-2935-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	45258945	45258945	C	T	SNP	ALOX5	NM_000698	human	genbank	54_36p	+1	reviewed	silent	c.1527	p.F509	0.944	superfamily_Lipoxygenase,HMMPfam_Lipoxygenase	superfamily_Lipase_LipOase,HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipoxygenase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_1,PatternScan_LIPOXYGENASE_2	-	no_errors
PKD1L2	114780	genome.wustl.edu	36	16	79718974	79718975	+	Frame_Shift_Ins	INS	-	-	TACTGCCAAGCCTGGGGAAAGC			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	16	79718974	79718975	-	TACTGCCAAGCCTGGGGAAAGC	INS	PKD1L2	ENST00000299598	human	ensembl	54_36p	-1	known	frame_shift_ins	c.6251_6250	p.T2084fs	1.000:1.000	HMMPfam_PKD_channel	HMMPfam_GPS,HMMSmart_SM00303,PatternScan_CHANNEL_COLICIN,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel,superfamily_C-type lectin-like	-	no_errors
LOC441013	441013	genome.wustl.edu	36	4	43107115	43107115	+	RNA	SNP	G	G	A			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	4	43107115	43107115	G	A	SNP	LOC441013	XR_016299	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
HERC2	8924	genome.wustl.edu	36	15	26062848	26062848	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	15	26062848	26062848	G	T	SNP	HERC2	NM_004667	human	genbank	54_36p	-1	validated	missense	c.11269	p.L3757M	0.998	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_Cyt-b5,superfamily_Cytochrome b5-like heme/steroid binding domain,HMMSmart_SM00706,superfamily_Galactose-binding domain-like,superfamily_RCC1/BLIP-II,HMMPfam_MIB_HERC2,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
CES1P1	51716	genome.wustl.edu	36	16	54352031	54352031	+	RNA	SNP	C	C	T			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	16	54352031	54352031	C	T	SNP	CES4	NR_003276	human	genbank	54_36p	+1	validated	rna	NULL	NULL	0.000	-	-	-	pseudogene
MAOA	4128	genome.wustl.edu	36	X	43456110	43456111	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AB-2935-03A-01W-0745-08	TCGA-AB-2935-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	43456110	43456111	-	A	INS	MAOA	NM_000240	human	genbank	54_36p	+1	reviewed	frame_shift_ins	c.354_355	p.I118fs	0.037:0.036	superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase	superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase,superfamily_FAD-linked reductases C-terminal domain	-	no_errors
ANO3	63982	genome.wustl.edu	36	11	26620060	26620060	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	11	26620060	26620060	G	C	SNP	ANO3	NM_031418	human	genbank	54_36p	+1	validated	missense	c.2183	p.G728A	0.983	HMMPfam_DUF590	HMMPfam_DUF590	-	no_errors
ENSG00000212884	0	genome.wustl.edu	36	NT_113930	117787	117787	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2935-03A-01W-0745-08	TCGA-AB-2935-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113930	117787	117787	G	A	SNP	ENSG00000212884	ENST00000391571	human	ensembl	54_36p	+1	known	missense	c.418	p.G140R	NULL	NULL	HMMPfam_2-Hacid_dh,superfamily_SSF52283	-	no_errors
FCGBP	8857	genome.wustl.edu	36	19	45068708	45068708	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2935-03A-01W-0745-08	TCGA-AB-2935-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	45068708	45068708	C	T	SNP	FCGBP	NM_003890	human	genbank	54_36p	-1	validated	missense	c.11554	p.E3852K	0.002	NULL	HMMSmart_VWC,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_TIL_assoc,HMMSmart_FOLN,HMMPfam_C8,HMMPfam_TIL	-	no_errors
RELL2	285613	genome.wustl.edu	36	5	140999226	140999226	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2935-03A-01W-0745-08	TCGA-AB-2935-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140999226	140999226	C	A	SNP	RELL2	NM_173828	human	genbank	54_36p	+1	validated	missense	c.329	p.T110N	0.820	NULL	NULL	-	no_errors
FLJ43860	389690	genome.wustl.edu	36	8	142549983	142549983	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	8	142549983	142549983	C	T	SNP	FLJ43860	NM_207414	human	genbank	54_36p	-1	validated	missense	c.2068	p.G690R	0.009	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	pseudogene
TRIM28	10155	genome.wustl.edu	36	19	63752072	63752072	+	Silent	SNP	T	T	C			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	19	63752072	63752072	T	C	SNP	TRIM28	NM_005762	human	genbank	54_36p	+1	reviewed	silent	c.1392	p.H464	0.987	NULL	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00502,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00297	-	no_errors
FREM2	341640	genome.wustl.edu	36	13	38350970	38350970	+	Silent	SNP	C	C	T			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	13	38350970	38350970	C	T	SNP	FREM2	NM_207361	human	genbank	54_36p	+1	reviewed	silent	c.8862	p.D2954	1.000	NULL	HMMPfam_Calx-beta,HMMSmart_SM00237	-	no_errors
ZBTB33	10009	genome.wustl.edu	36	X	119271326	119271326	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	X	119271326	119271326	A	C	SNP	ZBTB33	NM_006777	human	genbank	54_36p	+1	validated	missense	c.28	p.T10P	1.000	superfamily_POZ domain	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
PHYHIPL	84457	genome.wustl.edu	36	10	60606675	60606675	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	10	60606675	60606675	A	C	SNP	PHYHIPL	NM_032439	human	genbank	54_36p	+1	validated	missense	c.56	p.E19A	1.000	NULL	superfamily_Fibronectin type III,HMMPfam_fn3	-	no_errors
NAP1L2	4674	genome.wustl.edu	36	X	72350389	72350391	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-AB-2935-03A-01W-0745-08	TCGA-AB-2935-11A-01W-0745-08	TCC	TCC			TCC	TCC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	72350389	72350391	TCC	-	DEL	NAP1L2	NM_021963	human	genbank	54_36p	-1	reviewed	in_frame_del	c.665_663	p.E221in_frame_del	0.013:0.014:0.003	HMMPfam_NAP	HMMPfam_NAP	-	no_errors
SPAG8	26206	genome.wustl.edu	36	9	35801486	35801497	+	In_Frame_Del	DEL	CCAGGACCAGAG	CCAGGACCAGAG	-			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	CCAGGACCAGAG	CCAGGACCAGAG			CCAGGACCAGAG	CCAGGACCAGAG	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	9	35801486	35801497	CCAGGACCAGAG	-	DEL	SPAG8	NM_172312	human	genbank	54_36p	-1	reviewed	in_frame_del	c.557_546	p.SGPG183in_frame_del	0.022:0.074:0.094:0.072:0.004:0.003:0.009:0.011:0.012:0.001:0.001:0.000	NULL	NULL	-	no_errors
ZNF229	7772	genome.wustl.edu	36	19	49625375	49625375	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	19	49625375	49625375	G	C	SNP	ZNF229	NM_014518	human	genbank	54_36p	-1	validated	missense	c.1421	p.S474C	0.205	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LOC392301	392301	genome.wustl.edu	36	9	32324301	32324301	+	RNA	SNP	C	C	T			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	9	32324301	32324301	C	T	SNP	LOC392301	XR_017331	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.991	-	-	-	pseudogene
ENSG00000215615	0	genome.wustl.edu	36	NT_113889	39996	39996	+	Silent	SNP	G	G	A			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	NT_113889	39996	39996	G	A	SNP	ENSG00000215615	ENST00000400681	human	ensembl	54_36p	-1	known	silent	c.321	p.N107	NULL	HMMPfam_Tektin	HMMPfam_Tektin	-	no_stop_codon
ZDHHC22	283576	genome.wustl.edu	36	14	76675502	76675502	+	Silent	SNP	A	A	G			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	14	76675502	76675502	A	G	SNP	ZDHHC22	NM_174976	human	genbank	54_36p	-1	validated	silent	c.333	p.C111	1.000	HMMPfam_zf-DHHC	HMMPfam_zf-DHHC	-	no_errors
IGLV3-1	28809	genome.wustl.edu	36	22	21553277	21553277	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2935-03A-01W-0745-08	TCGA-AB-2935-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	21553277	21553277	G	C	SNP	IGLV3-1	ENST00000390319	human	ensembl	54_36p	+1	known	missense	c.53	p.R18T	0.898	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406	-	no_stop_codon
ENSG00000215615	0	genome.wustl.edu	36	NT_113889	40716	40716	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	NT_113889	40716	40716	C	T	SNP	ENSG00000215615	ENST00000400681	human	ensembl	54_36p	-1	known	missense	c.214	p.V72M	NULL	HMMPfam_Tektin	HMMPfam_Tektin	-	no_stop_codon
MOCOS	55034	genome.wustl.edu	36	18	32049607	32049607	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	18	32049607	32049607	G	A	SNP	MOCOS	NM_017947	human	genbank	54_36p	+1	validated	missense	c.1466	p.R489H	0.001	NULL	HMMPfam_Aminotran_5,HMMPfam_MOSC,HMMPfam_MOSC_N,superfamily_PK beta-barrel domain-like,superfamily_PLP-dependent transferases	-	no_errors
CAMKV	79012	genome.wustl.edu	36	3	49871771	49871771	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	3	49871771	49871771	C	T	SNP	CAMKV	NM_024046	human	genbank	54_36p	-1	validated	missense	c.1490	p.R497K	0.693	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	-	no_errors
PATZ1	23598	genome.wustl.edu	36	22	30070769	30070769	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	22	30070769	30070769	T	C	SNP	PATZ1	NM_014323	human	genbank	54_36p	-1	reviewed	missense	c.820	p.N274D	0.977	HMMPfam_AT_hook	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,PatternScan_HMGI_Y,HMMPfam_AT_hook,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
GJB3	2707	genome.wustl.edu	36	1	35023379	35023379	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	1	35023379	35023379	C	G	SNP	GJB3	NM_001005752	human	genbank	54_36p	+1	reviewed	missense	c.429	p.F143L	0.072	HMMPfam_Connexin_CCC	HMMPfam_Connexin,HMMSmart_SM00037,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2	-	no_errors
LOC387703	387703	genome.wustl.edu	36	10	94956679	94956679	+	RNA	SNP	G	G	A			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	10	94956679	94956679	G	A	SNP	LOC387703	XR_016730	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.943	-	-	-	pseudogene
PPIC	5480	genome.wustl.edu	36	5	122389463	122389463	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	5	122389463	122389463	T	C	SNP	PPIC	NM_000943	human	genbank	54_36p	-1	reviewed	missense	c.425	p.N142S	1.000	superfamily_Cyclophilin-like,HMMPfam_Pro_isomerase	superfamily_Cyclophilin-like,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1	-	no_errors
LILRB1	10859	genome.wustl.edu	36	19	59838540	59838540	+	Silent	SNP	T	T	C			TCGA-AB-2935-03A-01W-0755-09	TCGA-AB-2935-11A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	19	59838540	59838540	T	C	SNP	LILRB1	NM_001081637	human	genbank	54_36p	+1	reviewed	silent	c.1581	p.D527	0.000	NULL	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	-	no_errors
