Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
SLC38A10	124565	genome.wustl.edu	36	17	76834096	76834098	+	In_Frame_Del	DEL	ATG	ATG	-			TCGA-AB-2937-03A-01W-0732-08	TCGA-AB-2937-11A-01W-0732-08	ATG	ATG			ATG	ATG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	76834096	76834098	ATG	-	DEL	SLC38A10	NM_001037984	human	genbank	54_36p	-1	validated	in_frame_del	c.3215_3213	p.I1072in_frame_del	0.036:0.082:0.106	NULL	HMMPfam_Aa_trans	-	no_errors
GSTK1	373156	genome.wustl.edu	36	7	142670736	142670736	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2937-03A-01W-0732-08	TCGA-AB-2937-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	142670736	142670736	C	A	SNP	GSTK1	NM_015917	human	genbank	54_36p	+1	reviewed	missense	c.8	p.P3H	0.294	superfamily_Thioredoxin-like	superfamily_Thioredoxin-like,HMMPfam_DSBA	-	no_errors
TMTC4	84899	genome.wustl.edu	36	13	100075849	100075849	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2937-03A-01W-0732-08	TCGA-AB-2937-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	100075849	100075849	G	A	SNP	TMTC4	NM_032813	human	genbank	54_36p	-1	validated	missense	c.1777	p.R593W	1.000	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	HMMPfam_DUF1736,superfamily_TPR-like,HMMPfam_TPR_2,HMMSmart_SM00028,HMMPfam_TPR_1	-	no_errors
GPR115	221393	genome.wustl.edu	36	6	47789760	47789760	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2937-03A-01W-0732-08	TCGA-AB-2937-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	47789760	47789760	C	T	SNP	GPR115	NM_153838	human	genbank	54_36p	+1	validated	nonsense	c.820	p.Q274*	0.042	NULL	HMMPfam_7tm_2	-	no_errors
RNF213	57674	genome.wustl.edu	36	17	75936028	75936028	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2937-03A-01W-0732-08	TCGA-AB-2937-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	75936028	75936028	G	C	SNP	RNF213	NM_020914	human	genbank	54_36p	+1	validated	missense	c.3517	p.V1173L	1.000	NULL	HMMSmart_SM00184,HMMSmart_SM00382,HMMPfam_zf-C3HC4,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_RING/U-box	-	no_errors
RBBP6	5930	genome.wustl.edu	36	16	24472381	24472382	+	Splice_Site	DEL	TA	TA	-			TCGA-AB-2937-03A-01W-0732-08	TCGA-AB-2937-11A-01W-0732-08	TA	TA			TA	TA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	24472381	24472382	TA	-	DEL	RBBP6	NM_006910	human	genbank	54_36p	+1	reviewed	splice_site_del	c.348+2_348+1	e4+2	1.000:1.000	-	-	-	no_errors
uc009xnf.1	0	genome.wustl.edu	36	10	46627819	46627819	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2937-03A-01W-0732-08	TCGA-AB-2937-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	46627819	46627819	T	C	SNP	uc009xnf.1	ENST00000399508	human	ensembl	54_36p	-1	known	missense	c.386	p.H129R	1.000	NULL	superfamily_SSF50729,HMMPfam_PH	-	no_stop_codon
DNAH9	1770	genome.wustl.edu	36	17	11495324	11495324	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2937-03A-01W-0732-08	TCGA-AB-2937-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	11495324	11495324	C	T	SNP	DNAH9	NM_001372	human	genbank	54_36p	+1	reviewed	missense	c.2311	p.R771C	0.002	HMMPfam_DHC_N1	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2	-	no_errors
HNRNPK	3190	genome.wustl.edu	36	9	85781728	85781729	+	Splice_Site	INS	-	-	T			TCGA-AB-2937-03A-01W-0732-08	TCGA-AB-2937-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	85781728	85781729	-	T	INS	HNRNPK	NM_002140	human	genbank	54_36p	-1	reviewed	splice_site_ins	c.213+1_213+1	e3+1	1.000:1.000	-	-	-	no_errors
COASY	80347	genome.wustl.edu	36	17	37971021	37971022	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-AB-2937-03A-01W-0732-08	TCGA-AB-2937-11A-01W-0732-08	GT	GT			GT	GT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	37971021	37971022	GT	-	DEL	COASY	NM_001042529	human	genbank	54_36p	+1	validated	frame_shift_del	c.1394_1395	p.V468fs	0.000:0.004	HMMPfam_CoaE,superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_Nucleotidylyl transferase,HMMPfam_CTP_transf_2,HMMPfam_CoaE,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TET2	54790	genome.wustl.edu	36	4	106374923	106374923	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2937-03A-01W-0732-08	TCGA-AB-2937-11A-01W-0732-08	C	C			C	C	Verified	Valid	Somatic		Capture				Illumina GAIIx	4	106374923	106374923	C	0	DEL	TET2	NM_017628	human	genbank	54_36p	1	validated	frame_shift_del	c.375	p.F125fs	0.6	NULL	NULL	(deletion:cds_exon[106374549,106378046])	NA
HNRNPK	3190	genome.wustl.edu	36	9	85781729	85781730	+	Splice_Site	INS	-	-	TA			TCGA-AB-2937-03A-01W-0732-08	TCGA-AB-2937-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	85781729	85781730	-	TA	INS	HNRNPK	NM_002140	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.214_213	p.N72fs	1.000:1.000	superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1	HMMPfam_ROKNT,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1	-	no_errors
ZFHX4	79776	genome.wustl.edu	36	8	77926663	77926663	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2937-03A-01W-0732-08	TCGA-AB-2937-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	77926663	77926663	G	C	SNP	ZFHX4	NM_024721	human	genbank	54_36p	+1	validated	missense	c.4816	p.D1606H	0.990	NULL	HMMSmart_SM00355,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
C2	717	genome.wustl.edu	36	6	32009522	32009522	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2937-03A-01W-0732-08	TCGA-AB-2937-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	32009522	32009522	C	T	SNP	C2	NM_000063	human	genbank	54_36p	+1	reviewed	missense	c.599	p.T200M	0.933	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Complement control module/SCR domain,HMMSmart_SM00032,HMMPfam_Sushi,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
ENSG00000216522	0	genome.wustl.edu	36	NT_113923	88050	88050	+	Splice_Site	SNP	G	G	A			TCGA-AB-2937-03A-01W-0732-08	TCGA-AB-2937-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113923	88050	88050	G	A	SNP	ENSG00000216522	ENST00000402757	human	ensembl	54_36p	-1	known	splice_site	c.733-1	e6-1	NULL	-	-	-	no_errors
ENSG00000215398	0	genome.wustl.edu	36	14	18187129	18187129	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AB-2937-03A-01W-0732-08	TCGA-AB-2937-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	18187129	18187129	A	-	DEL	ENSG00000215398	ENST00000400208	human	ensembl	54_36p	+1	known	frame_shift_del	c.435	p.S146fs	0.001	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	PatternScan_ASP_PROTEASE,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_start_codon
MT-ND4	0	genome.wustl.edu	36	MT	11462	11462	+	Silent	SNP	A	A	G			TCGA-AB-2937-03A-01W-0732-08	TCGA-AB-2937-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	11462	11462	A	G	SNP	MT-ND4	ENST00000361381	human	ensembl	54_36p	+1	known	silent	c.702	p.V234	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1	-	no_stop_codon:bad_bp_length_for_coding_region
KIT	3815	genome.wustl.edu	36	4	55294078	55294078	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2937-03A-01W-0732-08	TCGA-AB-2937-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	55294078	55294078	A	T	SNP	KIT	NM_000222	human	genbank	54_36p	+1	reviewed	missense	c.2447	p.D816V	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_IGc2,HMMSmart_IG,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
WBSCR17	64409	genome.wustl.edu	36	7	70768465	70768465	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2937-03A-01W-0732-08	TCGA-AB-2937-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	70768465	70768465	G	A	SNP	WBSCR17	NM_022479	human	genbank	54_36p	+1	reviewed	nonsense	c.1214	p.W405*	1.000	superfamily_Nucleotide-diphospho-sugar transferases	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458	-	no_errors
