Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
MT-CO1	0	genome.wustl.edu	36	MT	7333	7333	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	7333	7333	G	A	SNP	MT-CO1	ENST00000361624	human	ensembl	54_36p	+1	known	missense	c.1429	p.A477T	NULL	superfamily_Cytochrome c oxidase subunit I-like	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	-	no_stop_codon
SPHKAP	80309	genome.wustl.edu	36	2	228705007	228705007	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	228705007	228705007	G	A	SNP	SPHKAP	NM_030623	human	genbank	54_36p	-1	validated	missense	c.71	p.P24L	0.000	NULL	HMMPfam_AKAP_110	-	no_errors
SLC4A3	6508	genome.wustl.edu	36	2	220213566	220213566	+	Splice_Site	SNP	G	G	A			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	220213566	220213566	G	A	SNP	SLC4A3	NM_201574	human	genbank	54_36p	+1	validated	splice_site	c.3528+1	e20+1	1.000	-	-	-	no_errors
ABCF1	23	genome.wustl.edu	36	6	30647269	30647269	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	30647269	30647269	C	T	SNP	ABCF1	NM_001025091	human	genbank	54_36p	+1	reviewed	missense	c.26	p.P9L	0.999	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
CHD4	1108	genome.wustl.edu	36	12	6571844	6571844	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	6571844	6571844	C	T	SNP	CHD4	NM_001273	human	genbank	54_36p	-1	reviewed	missense	c.2924	p.R975H	1.000	HMMPfam_SNF2_N	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,PatternScan_CHROMO_1,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMSmart_SM00249,PatternScan_DEAH_ATP_HELICASE,HMMPfam_DUF1086,HMMPfam_DUF1087,superfamily_FYVE/PHD zinc finger,HMMPfam_CHDCT2,HMMPfam_CHDNT,HMMSmart_SM00487,superfamily_Chromo domain-like,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SUZ12	23512	genome.wustl.edu	36	17	27334134	27334135	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	CT	CT			CT	CT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	27334134	27334135	CT	-	DEL	SUZ12	NM_015355	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.921_922	p.L308fs	0.998:0.998	NULL	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,HMMPfam_VEFS-Box	-	no_errors
ORAI1	84876	genome.wustl.edu	36	12	120563336	120563336	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	120563336	120563336	A	G	SNP	ORAI1	NM_032790	human	genbank	54_36p	+1	reviewed	missense	c.316	p.M106V	0.997	HMMPfam_DUF1650	HMMPfam_DUF1650	-	no_errors
LOC129293	129293	genome.wustl.edu	36	2	84951165	84951165	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	84951165	84951165	G	T	SNP	LOC129293	NM_001080824	human	genbank	54_36p	-1	predicted	missense	c.364	p.R122S	0.997	NULL	NULL	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25310746	25310746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25310746	25310746	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2645	p.R882H	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
RUNX1	861	genome.wustl.edu	36	21	35093493	35093494	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	AG	AG			AG	AG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	35093493	35093494	AG	-	DEL	RUNX1	NM_001754	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.942_941	p.S314fs	0.983:1.000	NULL	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
CCL11	6356	genome.wustl.edu	36	17	29638754	29638754	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	29638754	29638754	C	T	SNP	CCL11	NM_002986	human	genbank	54_36p	+1	reviewed	missense	c.226	p.P76S	0.992	superfamily_Interleukin 8-like chemokines,HMMPfam_IL8,HMMSmart_SM00199	superfamily_Interleukin 8-like chemokines,HMMPfam_IL8,HMMSmart_SM00199,PatternScan_SMALL_CYTOKINES_CC	-	no_errors
NRXN3	9369	genome.wustl.edu	36	14	78245493	78245493	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	78245493	78245493	A	G	SNP	NRXN3	NM_004796	human	genbank	54_36p	+1	reviewed	missense	c.283	p.M95V	0.998	superfamily_ConA_like_lec_gl,HMMSmart_LamG	superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2,HMMSmart_LamG,HMMSmart_EGF,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMSmart_4.1m	-	no_errors
ST8SIA4	7903	genome.wustl.edu	36	5	100250084	100250084	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	100250084	100250084	T	C	SNP	ST8SIA4	NM_005668	human	genbank	54_36p	-1	reviewed	missense	c.365	p.H122R	0.997	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29	-	no_errors
NMUR2	56923	genome.wustl.edu	36	5	151764747	151764747	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	151764747	151764747	G	A	SNP	NMUR2	NM_020167	human	genbank	54_36p	-1	reviewed	missense	c.121	p.R41C	0.866	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
LOC646090	646090	genome.wustl.edu	36	15	18727164	18727164	+	RNA	SNP	G	G	C			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	18727164	18727164	G	C	SNP	LOC646090	XR_017120	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.961	-	-	-	pseudogene
VLDLR	7436	genome.wustl.edu	36	9	2642945	2642945	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	2642945	2642945	C	G	SNP	VLDLR	NM_003383	human	genbank	54_36p	+1	validated	missense	c.2582	p.P861R	1.000	NULL	HMMPfam_Ldl_recept_a,superfamily_LDL receptor-like module,HMMSmart_SM00181,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b	-	no_errors
MUC16	94025	genome.wustl.edu	36	19	8917283	8917283	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	8917283	8917283	G	T	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	missense	c.31163	p.P10388Q	0.001	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
TNFAIP6	7130	genome.wustl.edu	36	2	151928776	151928776	+	Silent	SNP	G	G	T			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	151928776	151928776	G	T	SNP	TNFAIP6	NM_007115	human	genbank	54_36p	+1	reviewed	silent	c.168	p.A56	0.331	HMMSmart_SM00445,HMMPfam_Xlink,superfamily_C-type lectin-like	HMMSmart_SM00445,HMMPfam_Xlink,superfamily_C-type lectin-like,PatternScan_LINK_1,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	-	no_errors
NCOA3	8202	genome.wustl.edu	36	20	45697744	45697744	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	45697744	45697744	A	-	DEL	NCOA3	NM_181659	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.1384	p.N462fs	0.994	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_PAS,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_SRC-1,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_Nuc_rec_co-act,HMMPfam_DUF1518	-	no_errors
LRCH3	84859	genome.wustl.edu	36	3	199040920	199040920	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	199040920	199040920	G	A	SNP	LRCH3	NM_032773	human	genbank	54_36p	+1	provisional	missense	c.866	p.R289K	1.000	superfamily_SSF52058	superfamily_SSF52058,HMMPfam_LRR_1,superfamily_Calponin-homology	-	no_errors
IDH1	3417	genome.wustl.edu	36	2	208821357	208821357	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	208821357	208821357	C	T	SNP	IDH1	NM_005896	human	genbank	54_36p	-1	reviewed	missense	c.395	p.R132H	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
LYSMD4	145748	genome.wustl.edu	36	15	98089583	98089583	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	98089583	98089583	G	A	SNP	LYSMD4	ENST00000332728	human	ensembl	54_36p	-1	known	missense	c.145	p.R49W	0.995	NULL	HMMSmart_SM00257,HMMPfam_LysM	-	no_errors
PCDH18	54510	genome.wustl.edu	36	4	138662113	138662113	+	Silent	SNP	G	G	A			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	138662113	138662113	G	A	SNP	PCDH18	NM_019035	human	genbank	54_36p	-1	reviewed	silent	c.2928	p.S976	0.006	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PRDM7	11105	genome.wustl.edu	36	16	88657663	88657663	+	Silent	SNP	C	C	T			TCGA-AB-2949-03A-01W-0733-08	TCGA-AB-2949-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	88657663	88657663	C	T	SNP	PRDM7	NM_001098173	human	genbank	54_36p	-1	reviewed	silent	c.366	p.A122	0.000	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349,HMMPfam_KRAB,HMMPfam_SSXRD	-	no_errors
