Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
MYH14	79784	genome.wustl.edu	36	19	55475196	55475196	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	55475196	55475196	C	G	SNP	MYH14	NM_001077186	human	genbank	54_36p	+1	reviewed	missense	c.4024	p.L1342V	1.000	HMMPfam_Myosin_tail_1	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CDH4	1002	genome.wustl.edu	36	20	59752224	59752224	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	20	59752224	59752224	C	T	SNP	CDH4	NM_001794	human	genbank	54_36p	+1	reviewed	missense	c.380	p.P127L	0.000	superfamily_Cadherin	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin	-	no_errors
PKD1L3	342372	genome.wustl.edu	36	16	70573608	70573608	+	Silent	SNP	G	G	A			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	16	70573608	70573608	G	A	SNP	PKD1L3	ENST00000335106	human	ensembl	54_36p	-1	known	silent	c.994	p.L332	0.720	NULL	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_Ion_trans,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),superfamily_C-type lectin-like	-	no_errors
LRWD1	222229	genome.wustl.edu	36	7	101893698	101893698	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	7	101893698	101893698	C	A	SNP	LRWD1	NM_152892	human	genbank	54_36p	+1	provisional	missense	c.408	p.N136K	0.923	superfamily_SSF52058	HMMPfam_LRR_1,HMMSmart_WD40,HMMSmart_LRR_TYP,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_SSF52058	-	no_errors
ROBO2	6092	genome.wustl.edu	36	3	77682747	77682747	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	3	77682747	77682747	G	A	SNP	ROBO2	NM_002942	human	genbank	54_36p	+1	reviewed	missense	c.1148	p.R383H	0.999	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	CATG			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	-	-			-	-	Verified	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	170770152	170770153	0	CATG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
GUCA2A	2980	genome.wustl.edu	36	1	42401777	42401777	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	A	A			A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	42401777	42401777	A	G	SNP	GUCA2A	NM_033553	human	genbank	54_36p	-1	validated	missense	c.167	p.F56S	0.000	HMMPfam_Guanylin,superfamily_Proguanylin	HMMPfam_Guanylin,superfamily_Proguanylin,PatternScan_2FE2S_FER_1	-	no_errors
SCEL	8796	genome.wustl.edu	36	13	77114864	77114864	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	13	77114864	77114864	T	C	SNP	SCEL	NM_144777	human	genbank	54_36p	+1	reviewed	missense	c.1970	p.L657S	1.000	HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1	HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1	-	no_errors
ANG	283	genome.wustl.edu	36	14	20231582	20231582	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	14	20231582	20231582	G	A	SNP	ANG	NM_001097577	human	genbank	54_36p	+1	reviewed	missense	c.19	p.V7I	0.001	NULL	HMMPfam_RnaseA,HMMSmart_SM00092,PatternScan_RNASE_PANCREATIC,superfamily_RNase A-like	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25310665	25310665	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	A	A			A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	25310665	25310665	A	C	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2726	p.F909C	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
ABCA10	10349	genome.wustl.edu	36	17	64682512	64682512	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	17	64682512	64682512	T	C	SNP	ABCA10	NM_080282	human	genbank	54_36p	-1	reviewed	missense	c.2879	p.K960R	0.597	NULL	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
BAAT	570	genome.wustl.edu	36	9	103164661	103164661	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	9	103164661	103164661	G	A	SNP	BAAT	NM_001701	human	genbank	54_36p	-1	reviewed	missense	c.1127	p.T376M	0.000	HMMPfam_BAAT_C,superfamily_SSF53474	HMMPfam_Bile_Hydr_Trans,HMMPfam_BAAT_C,superfamily_SSF53474	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27506214	27506215	+	In_Frame_Ins	INS	-	-	TTACCAAACTCTAAATTTTCTCTTGGAAACTCCCAT			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	-	-			-	-	Verified	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	13	27506252	27506253	0	TTACCAAACTCTAAATTTTCTCTTGGAAACTCCCAT	INS	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1803_1803	p.KWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFHRTWTEIFKEHNFSFYPTFQSHPNSSMPGSREVQIHPDSDQISGLHGNSFHSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADAEEAMYQNVDGRVSECPHTYQNRRPFSREMDLGLLSPQAQVEDS*602in_frame_insMGVSKRKFRVW*	1.000:0.998	NULL	HMMPfam_Pkinase_Tyr;superfamily_Protein kinase-like (PK-like);HMMPfam_ig;superfamily_Immunoglobulin	-	NA
TKTL1	8277	genome.wustl.edu	36	X	153211088	153211088	+	Silent	SNP	C	C	T			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	153211088	153211088	C	T	SNP	TKTL1	NM_012253	human	genbank	54_36p	+1	validated	silent	c.1647	p.A549	0.915	HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like	HMMPfam_Transketolase_N,HMMPfam_Transket_pyr,PatternScan_TRANSKETOLASE_2,HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like,superfamily_Thiamin diphosphate-binding fold (THDP-binding)	-	no_errors
SLC17A3	10786	genome.wustl.edu	36	6	25958309	25958309	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	25958309	25958309	G	A	SNP	SLC17A3	NM_001098486	human	genbank	54_36p	-1	validated	missense	c.1069	p.L357F	1.000	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	-	no_errors
NEFH	4744	genome.wustl.edu	36	22	28215618	28215618	+	Silent	SNP	T	T	A			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	22	28215618	28215618	T	A	SNP	NEFH	NM_021076	human	genbank	54_36p	+1	reviewed	silent	c.1989	p.P663	0.041	NULL	HMMPfam_DUF1388,HMMPfam_Filament,PatternScan_IF	-	no_errors
SPTBN5	51332	genome.wustl.edu	36	15	39955685	39955685	+	Silent	SNP	G	G	A			TCGA-AB-2988-03A-01D-0739-09	TCGA-AB-2988-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	15	39955685	39955685	G	A	SNP	SPTBN5	NM_016642	human	genbank	54_36p	-1	validated	silent	c.4041	p.N1347	0.001	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Spectrin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_PH domain-like	-	no_errors
