Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
RAB25	57111	genome.wustl.edu	36	1	154302405	154302405	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	154302405	154302405	C	A	SNP	RAB25	NM_020387	human	genbank	54_36p	+1	provisional	missense	c.123	p.S41R	0.993	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	-	no_errors
CBL	867	genome.wustl.edu	36	11	118654090	118654090	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	A	A			A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	118654090	118654090	A	G	SNP	CBL	NM_005188	human	genbank	54_36p	+1	reviewed	missense	c.1100	p.Q367R	1.000	superfamily_SSF57850	HMMPfam_UBA,HMMSmart_RING,HMMPfam_Cbl_N,superfamily_Adaptor_Cbl_N,HMMPfam_Cbl_N2,HMMPfam_Cbl_N3,HMMSmart_UBA,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF47473,superfamily_SSF55550,superfamily_SSF57850	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCAG			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	-	-			-	-	Verified	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	170770152	170770153	0	TCAG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
TRPC4AP	26133	genome.wustl.edu	36	20	33144232	33144232	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	20	33144232	33144232	G	A	SNP	TRPC4AP	NM_015638	human	genbank	54_36p	-1	validated	missense	c.14	p.P5L	0.997	NULL	NULL	-	no_errors
MAGI1	9223	genome.wustl.edu	36	3	65391533	65391533	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	3	65391533	65391533	C	T	SNP	MAGI1	NM_001033057	human	genbank	54_36p	-1	reviewed	missense	c.1427	p.R476Q	1.000	HMMPfam_PDZ,superfamily_PDZ domain-like	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Guanylate_kin,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
GABRG3	2567	genome.wustl.edu	36	15	25446355	25446355	+	Silent	SNP	G	G	A			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	15	25446355	25446355	G	A	SNP	GABRG3	ENST00000333743	human	ensembl	54_36p	+1	known	silent	c.1047	p.T349	0.011	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
HNRNPUL1	11100	genome.wustl.edu	36	19	46478923	46478923	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	46478923	46478923	C	T	SNP	HNRNPUL1	NM_007040	human	genbank	54_36p	+1	reviewed	missense	c.902	p.S301F	1.000	HMMPfam_SPRY,HMMSmart_SM00449	HMMPfam_SAP,HMMSmart_SM00513,HMMPfam_SPRY,HMMSmart_SM00449,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_SAP domain	-	no_errors
DLX3	1747	genome.wustl.edu	36	17	45423898	45423898	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	17	45423898	45423898	G	T	SNP	DLX3	NM_005220	human	genbank	54_36p	-1	reviewed	missense	c.846	p.N282K	1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
SUPT5H	6829	genome.wustl.edu	36	19	44641493	44641493	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	44641493	44641493	G	C	SNP	SUPT5H	NM_003169	human	genbank	54_36p	+1	validated	missense	c.398	p.R133P	1.000	NULL	HMMPfam_Supt5,HMMPfam_KOW,HMMSmart_SM00739,HMMSmart_SM00738,superfamily_Translation proteins SH3-like domain	-	no_errors
PDK4	5166	genome.wustl.edu	36	7	95055034	95055034	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	7	95055034	95055034	G	A	SNP	PDK4	NM_002612	human	genbank	54_36p	-1	reviewed	missense	c.811	p.P271S	0.859	HMMPfam_HATPase_c,HMMSmart_SM00387,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	HMMPfam_HATPase_c,HMMSmart_SM00387,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_BCDHK_Adom3,superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain	-	no_errors
LOC100130211	100130211	genome.wustl.edu	36	X	85302265	85302265	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2989-03A-01D-0739-09	TCGA-AB-2989-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	85302265	85302265	C	T	SNP	LOC100130211	XM_001717632	human	genbank	54_36p	-1	model	missense	c.736	p.G246S	1.000	HMMPfam_GTP_EFTU_D3,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	HMMPfam_GTP_EFTU,HMMPfam_GTP_EFTU_D3,HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	pseudogene
