Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
ZNF485	220992	genome.wustl.edu	36	10	43432541	43432541	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	10	43432541	43432541	C	G	SNP	ZNF485	NM_145312	human	genbank	54_36p	+1	validated	missense	c.927	p.H309Q	0.995	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ATP9B	374868	genome.wustl.edu	36	18	75114470	75114470	+	Silent	SNP	T	T	A			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	18	75114470	75114470	T	A	SNP	ATP9B	NM_198531	human	genbank	54_36p	+1	validated	silent	c.1209	p.G403	0.999	HMMPfam_E1-E2_ATPase	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors
MAP1B	4131	genome.wustl.edu	36	5	71527714	71527714	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	71527714	71527714	T	C	SNP	MAP1B	NM_005909	human	genbank	54_36p	+1	validated	missense	c.2776	p.F926L	1.000	NULL	HMMPfam_MAP1B_neuraxin,PatternScan_MAP1B_NEURAXIN	-	no_errors
PCDHA4	56144	genome.wustl.edu	36	5	140168251	140168251	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	140168251	140168251	C	T	SNP	PCDHA4	NM_018907	human	genbank	54_36p	+1	reviewed	missense	c.1295	p.S432L	0.781	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
TRAM1L1	133022	genome.wustl.edu	36	4	118225696	118225696	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	A	A			A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	4	118225696	118225696	A	T	SNP	TRAM1L1	NM_152402	human	genbank	54_36p	-1	validated	missense	c.302	p.V101E	1.000	HMMPfam_TRAM1	HMMPfam_TRAM1,HMMSmart_TLC,HMMPfam_TRAM_LAG1_CLN8	-	no_errors
CAPG	822	genome.wustl.edu	36	2	85482483	85482483	+	Silent	SNP	C	C	G			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	85482483	85482483	C	G	SNP	CAPG	NM_001747	human	genbank	54_36p	-1	reviewed	silent	c.132	p.S44	0.472	superfamily_Actin depolymerizing proteins,HMMSmart_SM00262,HMMPfam_Gelsolin	superfamily_Actin depolymerizing proteins,HMMSmart_SM00262,HMMPfam_Gelsolin	-	no_errors
DDR2	4921	genome.wustl.edu	36	1	160992176	160992176	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	160992176	160992176	G	A	SNP	DDR2	NM_001014796	human	genbank	54_36p	+1	reviewed	missense	c.664	p.G222R	0.972	NULL	HMMSmart_FA58C,superfamily_Gal_bind_like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II	-	no_errors
NDUFA13	51079	genome.wustl.edu	36	19	19487967	19487967	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	19487967	19487967	T	C	SNP	NDUFA13	NM_015965	human	genbank	54_36p	+1	validated	missense	c.169	p.S57P	0.000	NULL	HMMPfam_GRIM-19	-	no_errors
SULT1C2	6819	genome.wustl.edu	36	2	108283798	108283798	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	108283798	108283798	C	T	SNP	SULT1C2	NM_176825	human	genbank	54_36p	+1	reviewed	missense	c.383	p.P128L	0.728	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	-	no_errors
TRPC1	7220	genome.wustl.edu	36	3	143986570	143986570	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	3	143986570	143986570	T	C	SNP	TRPC1	NM_003304	human	genbank	54_36p	+1	validated	missense	c.1193	p.I398T	1.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_TRP_2,HMMPfam_Ion_trans	-	no_errors
PTPRN	5798	genome.wustl.edu	36	2	219874632	219874632	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	219874632	219874632	G	A	SNP	PTPRN	NM_002846	human	genbank	54_36p	-1	reviewed	missense	c.1048	p.R350C	0.966	NULL	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
MIER3	166968	genome.wustl.edu	36	5	56260413	56260413	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	56260413	56260413	G	C	SNP	MIER3	NM_152622	human	genbank	54_36p	-1	validated	missense	c.859	p.R287G	1.000	superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding	PatternScan_EF_HAND_1,HMMPfam_ELM2,superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27506262	27506263	+	In_Frame_Ins	INS	-	-	TCATATTCTCTGAAATCAACGTAGAAGTACTCA			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	0	0			-	-	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	13	27506262	27506263	-	TCATATTCTCTGAAATCAACGTAGAAGTACTCA	INS	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1793	p.598in_frame_insDEYFYVDFREY	0.821	superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
TET2	54790	genome.wustl.edu	36	4	106413341	106413341	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	4	106413341	106413341	C	T	SNP	TET2	ENST00000265149	human	ensembl	54_36p	+1	known	nonsense	c.760	p.R254*	0.839	NULL	NULL	-	no_start_codon
PLXNA3	55558	genome.wustl.edu	36	X	153344975	153344975	+	Silent	SNP	C	C	T			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	153344975	153344975	C	T	SNP	PLXNA3	NM_017514	human	genbank	54_36p	+1	validated	silent	c.1365	p.P455	0.183	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,HMMSmart_IPT,superfamily_Ig_E-set,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_Rho_GAP	-	no_errors
CACNA1G	8913	genome.wustl.edu	36	17	46022948	46022948	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	17	46022948	46022948	T	C	SNP	CACNA1G	NM_018896	human	genbank	54_36p	+1	validated	missense	c.2419	p.Y807H	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
GRM8	2918	genome.wustl.edu	36	7	125960487	125960487	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	7	125960487	125960487	G	A	SNP	GRM8	NM_000845	human	genbank	54_36p	-1	reviewed	missense	c.2185	p.R729W	0.995	HMMPfam_7tm_3	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors
B4GALNT1	2583	genome.wustl.edu	36	12	56312117	56312117	+	Silent	SNP	G	G	A			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	12	56312117	56312117	G	A	SNP	B4GALNT1	NM_001478	human	genbank	54_36p	-1	reviewed	silent	c.66	p.L22	0.988	NULL	superfamily_SSF53448,HMMPfam_Glycos_transf_2	-	no_errors
ZNF687	57592	genome.wustl.edu	36	1	149526479	149526479	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	149526479	149526479	C	G	SNP	ZNF687	NM_020832	human	genbank	54_36p	+1	provisional	missense	c.1088	p.A363G	0.478	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
USP44	84101	genome.wustl.edu	36	12	94451003	94451003	+	Silent	SNP	A	A	G			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	A	A			A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	12	94451003	94451003	A	G	SNP	USP44	NM_001042403	human	genbank	54_36p	-1	validated	silent	c.1161	p.T387	0.997	superfamily_Cysteine proteinases,HMMPfam_UCH	HMMSmart_SM00290,HMMPfam_zf-UBP,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
CYP1A2	1544	genome.wustl.edu	36	15	72829580	72829580	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3006-03A-01D-0739-09	TCGA-AB-3006-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	15	72829580	72829580	G	A	SNP	CYP1A2	NM_000761	human	genbank	54_36p	+1	reviewed	missense	c.448	p.A150T	0.040	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
