Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
NAV1	89796	genome.wustl.edu	36	1	199884746	199884746	+	Silent	SNP	C	C	T			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	199884746	199884746	C	T	SNP	NAV1	NM_020443.3	human	genbank	54_36p	+1	reviewed	silent	c.327	p.P109	0.689	NULL	PatternScan_PPASE,superfamily_SSF52540,HMMSmart_AAA	-	no_errors
EED	8726	genome.wustl.edu	36	11	85646239	85646239	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	85646239	85646239	T	A	SNP	EED	NM_003797.2	human	genbank	54_36p	+1	reviewed	missense	c.587	p.L196Q	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
LOC100132903	100132903	genome.wustl.edu	36	17	44156725	44156725	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	17	44156725	44156725	G	T	SNP	LOC100132903	XM_001726558.1	human	genbank	54_36p	+1	model	missense	c.104	p.G35V	0.000	NULL	NULL	-	no_errors
ACSS3	79611	genome.wustl.edu	36	12	80061033	80061033	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	12	80061033	80061033	C	T	SNP	ACSS3	NM_024560.2	human	genbank	54_36p	+1	validated	missense	c.797	p.A266V	0.000	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors
ABCB11	8647	genome.wustl.edu	36	2	169488496	169488496	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	169488496	169488496	G	A	SNP	ABCB11	NM_003742.2	human	genbank	54_36p	-1	reviewed	missense	c.3848	p.A1283V	0.982	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
GDF5	8200	genome.wustl.edu	36	20	33485469	33485469	+	Silent	SNP	A	A	T			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	20	33485469	33485469	A	T	SNP	GDF5	NM_000557.2	human	genbank	54_36p	-1	reviewed	silent	c.1158	p.T386	0.507	NULL	HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	-	no_errors
FZD1	8321	genome.wustl.edu	36	7	90733681	90733681	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	7	90733681	90733681	G	A	SNP	FZD1	NM_003505.1	human	genbank	54_36p	+1	reviewed	missense	c.1550	p.R517H	1.000	HMMPfam_Frizzled	HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,HMMPfam_Frizzled	-	no_errors
KIAA1267	284058	genome.wustl.edu	36	17	41464770	41464770	+	Silent	SNP	C	C	T			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	17	41464770	41464770	C	T	SNP	KIAA1267	NM_015443.2	human	genbank	54_36p	-1	validated	silent	c.3237	p.A1079	0.003	NULL	NULL	-	no_errors
TM7SF4	81501	genome.wustl.edu	36	8	105436497	105436497	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	8	105436497	105436497	C	T	SNP	TM7SF4	NM_030788.2	human	genbank	54_36p	+1	reviewed	missense	c.1246	p.R416C	0.698	HMMPfam_DC_STAMP	HMMPfam_DC_STAMP	-	no_errors
CTCF	10664	genome.wustl.edu	36	16	66217970	66217970	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	16	66217970	66217970	C	T	SNP	CTCF	NM_006565.2	human	genbank	54_36p	+1	reviewed	nonsense	c.1369	p.R457*	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
COL12A1	1303	genome.wustl.edu	36	6	75917701	75917701	+	Silent	SNP	G	G	A			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	75917701	75917701	G	A	SNP	COL12A1	NM_004370.5	human	genbank	54_36p	-1	reviewed	silent	c.4023	p.V1341	0.459	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00210,HMMPfam_Collagen	-	no_errors
ZNF677	342926	genome.wustl.edu	36	19	58432183	58432183	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	58432183	58432183	G	T	SNP	ZNF677	NM_182609.2	human	genbank	54_36p	-1	provisional	missense	c.1609	p.H537N	0.931	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LOC727878	727878	genome.wustl.edu	36	10	2534120	2534120	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	10	2534120	2534120	C	T	SNP	LOC727878	XM_001126639.1	human	genbank	54_36p	-1	model	missense	c.20	p.R7Q	0.000	NULL	NULL	-	no_errors
MT-ND1	0	genome.wustl.edu	36	MT	3919	3919	+	Silent	SNP	G	G	A			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	MT	3919	3919	G	A	SNP	MT-ND1	ENST00000361390	human	ensembl	54_36p	+1	known	silent	c.612	p.E204	NULL	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_2	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_1,PatternScan_COMPLEX1_ND1_2	-	no_errors
LOC643962	643962	genome.wustl.edu	36	6	87597030	87597030	+	RNA	SNP	G	G	A			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	87597030	87597030	G	A	SNP	LOC643962	XR_041993.1	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.002	-	-	-	no_errors
LOC387761	387761	genome.wustl.edu	36	11	42231838	42231838	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	42231838	42231838	A	-	DEL	LOC387761	XM_373495.1	human	genbank	54_36p	-1	model	frame_shift_del	c.184	p.S62fs	0.003	NULL	NULL	-	no_errors
ARC	23237	genome.wustl.edu	36	8	143691876	143691876	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	8	143691876	143691876	C	G	SNP	ARC	NM_015193.3	human	genbank	54_36p	-1	validated	missense	c.759	p.W253C	1.000	NULL	NULL	-	no_errors
BAI1	575	genome.wustl.edu	36	8	143622650	143622650	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	8	143622650	143622650	C	T	SNP	BAI1	NM_001702.2	human	genbank	54_36p	+1	reviewed	missense	c.4625	p.T1542M	0.068	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
NMNAT2	23057	genome.wustl.edu	36	1	181488479	181488479	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	181488479	181488479	C	T	SNP	NMNAT2	NM_015039.2	human	genbank	54_36p	-1	reviewed	missense	c.844	p.G282S	0.996	superfamily_Nucleotidylyl transferase	superfamily_Nucleotidylyl transferase,HMMPfam_CTP_transf_2	-	no_errors
NCOA7	135112	genome.wustl.edu	36	6	126252643	126252643	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	126252643	126252643	A	G	SNP	NCOA7	NM_181782.1	human	genbank	54_36p	+1	validated	missense	c.1750	p.K584E	0.014	NULL	superfamily_LysM domain,HMMSmart_SM00257,HMMPfam_LysM,HMMPfam_GRAM,HMMSmart_SM00584,HMMPfam_TLD	-	no_errors
SUZ12	23512	genome.wustl.edu	36	17	27317311	27317311	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	17	27317311	27317311	G	A	SNP	SUZ12	NM_015355.2	human	genbank	54_36p	+1	reviewed	missense	c.488	p.G163D	1.000	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_VEFS-Box	-	no_errors
SV2A	9900	genome.wustl.edu	36	1	148144145	148144145	+	Silent	SNP	G	G	A			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	148144145	148144145	G	A	SNP	SV2A	NM_014849.3	human	genbank	54_36p	-1	validated	silent	c.1956	p.I652	0.996	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter,HMMPfam_MFS_1,PatternScan_SUGAR_TRANSPORT_2	-	no_errors
ACCN2	41	genome.wustl.edu	36	12	48739047	48739047	+	Silent	SNP	C	C	G			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	12	48739047	48739047	C	G	SNP	ACCN2	NM_020039.2	human	genbank	54_36p	+1	reviewed	silent	c.231	p.L77	1.000	HMMPfam_ASC	HMMPfam_ASC,PatternScan_ASC	-	no_errors
VPS13B	157680	genome.wustl.edu	36	8	100274306	100274306	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	8	100274306	100274306	C	A	SNP	VPS13B	NM_017890.2	human	genbank	54_36p	+1	reviewed	missense	c.2360	p.T787N	1.000	NULL	PatternScan_ZINC_PROTEASE	-	no_errors
GPRC6A	222545	genome.wustl.edu	36	6	117234348	117234348	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	117234348	117234348	C	A	SNP	GPRC6A	NM_148963.2	human	genbank	54_36p	-1	validated	missense	c.1213	p.D405Y	0.004	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3	-	no_errors
GNAI2	2771	genome.wustl.edu	36	3	50268699	50268699	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	3	50268699	50268699	G	A	SNP	GNAI2	NM_002070.2	human	genbank	54_36p	+1	validated	missense	c.536	p.R179H	0.998	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_Transducin (alpha subunit) insertion domain	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_Transducin (alpha subunit) insertion domain	-	no_errors
GABRR1	2569	genome.wustl.edu	36	6	89948418	89948418	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	89948418	89948418	C	T	SNP	GABRR1	NM_002042.3	human	genbank	54_36p	-1	reviewed	missense	c.856	p.A286T	1.000	superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	-	no_errors
WAC	51322	genome.wustl.edu	36	10	28864676	28864677	+	Frame_Shift_Ins	INS	-	-	AGGGC			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					-	-	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	10	28864676	28864677	-	AGGGC	INS	WAC	NM_016628.3	human	genbank	54_36p	+1	reviewed	frame_shift_ins	c.258_259	p.E87fs	1.000:1.000	NULL	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1	-	no_errors
LOC100130041	100130041	genome.wustl.edu	36	16	34581303	34581303	+	RNA	SNP	C	C	A			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	16	34581303	34581303	C	A	SNP	LOC100130041	XR_037947.1	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
PHF6	84295	genome.wustl.edu	36	X	133378890	133378890	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	133378890	133378890	G	T	SNP	PHF6	NM_001015877.1	human	genbank	54_36p	+1	reviewed	missense	c.860	p.G287V	1.000	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger	-	no_errors
BRPF1	7862	genome.wustl.edu	36	3	9761731	9761731	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	3	9761731	9761731	T	C	SNP	BRPF1	NM_001003694.1	human	genbank	54_36p	+1	reviewed	missense	c.2960	p.V987A	1.000	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_EPL1,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,superfamily_SSF63748,HMMPfam_PWWP,HMMSmart_PWWP	-	no_errors
SHANK1	50944	genome.wustl.edu	36	19	55857216	55857216	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	55857216	55857216	C	T	SNP	SHANK1	NM_016148.2	human	genbank	54_36p	-1	validated	missense	c.6304	p.D2102N	1.000	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
KCNT2	343450	genome.wustl.edu	36	1	194464035	194464035	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	194464035	194464035	C	T	SNP	KCNT2	NM_198503.2	human	genbank	54_36p	-1	validated	missense	c.3350	p.R1117Q	0.822	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_BK_channel_a	-	no_errors
CILP2	148113	genome.wustl.edu	36	19	19511501	19511501	+	Silent	SNP	C	C	T			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	19511501	19511501	C	T	SNP	CILP2	NM_153221.2	human	genbank	54_36p	+1	validated	silent	c.78	p.T26	0.003	NULL	superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,superfamily_CarboxypepD_reg,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	-	no_errors
TMEM151B	441151	genome.wustl.edu	36	6	44351654	44351654	+	Silent	SNP	G	G	A			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	44351654	44351654	G	A	SNP	TMEM151B	ENST00000388811	human	ensembl	54_36p	+1	known	silent	c.1113	p.T371	0.977	NULL	NULL	-	no_errors
AP1G2	8906	genome.wustl.edu	36	14	23103149	23103149	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	14	23103149	23103149	C	T	SNP	AP1G2	NM_003917.2	human	genbank	54_36p	-1	reviewed	missense	c.1037	p.R346Q	1.000	superfamily_ARM-type_fold,HMMPfam_Adaptin_N	superfamily_ARM-type_fold,HMMPfam_Adaptin_N,superfamily_Clath_adapt,HMMPfam_Alpha_adaptinC2,HMMSmart_Alpha_adaptinC2	-	no_errors
LOC253820	253820	genome.wustl.edu	36	3	170003465	170003465	+	Silent	SNP	C	C	T			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	3	170003465	170003465	C	T	SNP	LOC253820	XM_001726233.1	human	genbank	54_36p	+1	model	silent	c.324	p.P108	0.015	superfamily_EGF/Laminin,HMMSmart_SM00181	HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL	-	no_errors
ANK3	288	genome.wustl.edu	36	10	61596587	61596587	+	Splice_Site	SNP	C	C	A			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	10	61596587	61596587	C	A	SNP	ANK3	NM_020987.2	human	genbank	54_36p	-1	reviewed	splice_site	c.2551+1	e22+1	1.000	-	-	-	no_errors
RUNX1	861	genome.wustl.edu	36	21	35174739	35174740	+	Frame_Shift_Ins	INS	-	-	GGCTA			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					-	-	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	21	35174739	35174740	-	GGCTA	INS	RUNX1	NM_001754.2	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.493_492	p.G164fs	1.000:1.000	HMMPfam_Runt,superfamily_p53-like transcription factors	HMMPfam_Runt,superfamily_p53-like transcription factors,HMMPfam_RunxI	-	no_errors
DAAM2	23500	genome.wustl.edu	36	6	39977212	39977212	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	39977212	39977212	C	T	SNP	DAAM2	NM_015345.2	human	genbank	54_36p	+1	validated	missense	c.2965	p.R989C	1.000	HMMSmart_SM00498	HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2	-	no_errors
TONSL	4796	genome.wustl.edu	36	8	145639466	145639466	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	8	145639466	145639466	G	A	SNP	NFKBIL2	ENST00000409379	human	ensembl	54_36p	-1	known	missense	c.311	p.T104M	0.004	superfamily_TPR-like	superfamily_TPR-like,HMMSmart_SM00028,HMMPfam_TPR_1,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_RNI-like,HMMSmart_SM00368	-	no_errors
WT1	7490	genome.wustl.edu	36	11	32374485	32374486	+	Frame_Shift_Ins	INS	-	-	GACCG			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					-	-	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	32374485	32374486	-	GACCG	INS	WT1	NM_024426.3	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.1143_1142	p.A382fs	0.771:0.996	HMMPfam_WT1	HMMPfam_WT1,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LOC100130734	100130734	genome.wustl.edu	36	17	17227878	17227878	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	17	17227878	17227878	G	A	SNP	LOC100130734	XM_001716348.1	human	genbank	54_36p	+1	model	missense	c.1078	p.D360N	0.028	NULL	NULL	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179181002	179181003	+	In_Frame_Ins	INS	-	-	GAC			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					-	-	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	179181002	179181003	-	GAC	INS	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	in_frame_ins	c.40703_40702	p.I13568in_frame_insSL	1.000:1.000	superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
FFAR1	2864	genome.wustl.edu	36	19	40534990	40534990	+	Silent	SNP	G	G	A			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	40534990	40534990	G	A	SNP	FFAR1	NM_005303.1	human	genbank	54_36p	+1	provisional	silent	c.696	p.T232	0.663	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
DAXX	1616	genome.wustl.edu	36	6	33396275	33396275	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	33396275	33396275	G	A	SNP	DAXX	NM_001350.1	human	genbank	54_36p	-1	reviewed	missense	c.1111	p.R371W	1.000	HMMPfam_Daxx	HMMPfam_Daxx	-	no_errors
NF1	4763	genome.wustl.edu	36	17	26587107	26587107	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	17	26587107	26587107	C	T	SNP	NF1	NM_001042492.2	human	genbank	54_36p	+1	reviewed	nonsense	c.3916	p.R1306*	1.000	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMSmart_SM00516	-	no_errors
MYEOV	26579	genome.wustl.edu	36	11	68820412	68820412	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	68820412	68820412	C	A	SNP	MYEOV	NM_138768.2	human	genbank	54_36p	+1	validated	missense	c.919	p.L307I	0.000	NULL	NULL	-	no_errors
TSPYL5	85453	genome.wustl.edu	36	8	98358079	98358079	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	8	98358079	98358079	C	A	SNP	TSPYL5	NM_033512.2	human	genbank	54_36p	-1	validated	missense	c.1170	p.E390D	0.998	HMMPfam_NAP	HMMPfam_NAP	-	no_errors
DNM2	1785	genome.wustl.edu	36	19	10770237	10770238	+	Frame_Shift_Ins	INS	-	-	GCCATCGT			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					-	-	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	10770237	10770238	-	GCCATCGT	INS	DNM2	NM_001005360.1	human	genbank	54_36p	+1	reviewed	frame_shift_ins	c.1411_1412	p.T471fs	1.000:1.000	HMMPfam_Dynamin_M	HMMSmart_SM00053,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,PatternScan_DYNAMIN,HMMPfam_Dynamin_M,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_GED,HMMSmart_SM00302	-	no_errors
NUMA1	4926	genome.wustl.edu	36	11	71402098	71402099	+	Frame_Shift_Ins	INS	-	-	CCCC			TCGA-AB-3009-03A-01D-0739-09	TCGA-AB-3009-11A-01D-0739-09					-	-	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	71402098	71402099	-	CCCC	INS	NUMA1	NM_006185.2	human	genbank	54_36p	-1	validated	frame_shift_ins	c.4099_4098	p.C1366fs	0.996:0.977	NULL	superfamily_Prefoldin	-	no_errors
