Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7102181	7102181	+	Intron	SNP	C	A	A	rs113576127		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2M	2	broad.mit.edu	37	12	9264832	9264832	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AASDH	132949	broad.mit.edu	37	4	57204599	57204599	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48349979	48349979	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48356826	48356826	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA5	23461	broad.mit.edu	37	17	67290751	67290751	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87179629	87179629	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20698688	20698688	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB7	22	broad.mit.edu	37	X	74291487	74291487	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG1	9619	broad.mit.edu	37	21	43621892	43621892	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3	51225	broad.mit.edu	37	17	47295250	47295250	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM3	22885	broad.mit.edu	37	5	148610150	148610150	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABRA	137735	broad.mit.edu	37	8	107781677	107781677	+	Intron	SNP	T	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89392931	89392931	+	Silent	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN5	51802	broad.mit.edu	37	4	156787268	156787268	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACR	49	broad.mit.edu	37	22	51182598	51182598	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20563400	20563400	+	Intron	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTBL2	345651	broad.mit.edu	37	5	56778146	56778146	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTG1	71	broad.mit.edu	37	17	79478070	79478070	+	Silent	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL6A	86	broad.mit.edu	37	3	179291295	179291295	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL7B	10880	broad.mit.edu	37	9	111617731	111617731	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM11	4185	broad.mit.edu	37	17	42854947	42854947	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156917307	156917307	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM21P1	145241	broad.mit.edu	37	14	70713758	70713758	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207395809	207395809	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207424573	207424573	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106631036	106631036	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106812004	106812004	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106877594	106877594	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107113911	107113911	+	RNA	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107137081	107137081	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33662249	33662249	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33686504	33686504	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33804065	33804065	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33811738	33811738	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS15	170689	broad.mit.edu	37	11	130331582	130331582	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5146398	5146398	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5239937	5239937	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77323002	77323002	+	Intron	SNP	G	T	T	rs138499493	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43826126	43826126	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18662046	18662046	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7606705	7606705	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7711771	7711771	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7773317	7773317	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123003542	123003542	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFAP1L1	134265	broad.mit.edu	37	5	148699197	148699197	+	Missense_Mutation	SNP	T	A	A	rs140803806		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFG3L2	10939	broad.mit.edu	37	18	12367253	12367253	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	86726135	86726135	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	87572183	87572183	+	3'UTR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	50312193	50312193	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL5	60509	broad.mit.edu	37	2	27282185	27282185	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2L1	64850	broad.mit.edu	37	4	109677671	109677671	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1	202	broad.mit.edu	37	6	106967187	106967187	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP13	11214	broad.mit.edu	37	15	86228000	86228000	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP8	10270	broad.mit.edu	37	19	15484839	15484839	+	Silent	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKD1	221264	broad.mit.edu	37	6	109859905	109859905	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B10	57016	broad.mit.edu	37	7	134225943	134225943	+	3'UTR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALKBH5	54890	broad.mit.edu	37	17	18111563	18111563	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1P	200420	broad.mit.edu	37	2	73900974	73900974	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73635924	73635924	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMACR	23600	broad.mit.edu	37	5	33989621	33989621	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMACR	23600	broad.mit.edu	37	5	33997334	33997334	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114253221	114253221	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114276239	114276239	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKH	56172	broad.mit.edu	37	5	14762530	14762545	+	Intron	DEL	TGGTTTCAGAGTACTG	-	-	rs113529202		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKK1	255239	broad.mit.edu	37	11	113267005	113267005	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37481880	37481881	+	Intron	DNP	CC	AA	AA			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD34A	284615	broad.mit.edu	37	1	145474737	145474737	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99837588	99837588	+	Splice_Site	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA13	312	broad.mit.edu	37	8	124714864	124714864	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA7	310	broad.mit.edu	37	10	75139842	75139842	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36616225	36616225	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36763782	36763782	+	5'UTR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3B	9582	broad.mit.edu	37	22	39380195	39380195	+	Missense_Mutation	SNP	C	T	T	rs143126732	byFrequency	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP1	116985	broad.mit.edu	37	11	72410246	72410246	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGEF2	10564	broad.mit.edu	37	20	47634062	47634062	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP30	257106	broad.mit.edu	37	1	161022213	161022213	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF5	7984	broad.mit.edu	37	7	144068249	144068249	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID2	196528	broad.mit.edu	37	12	46298925	46298925	+	3'UTR	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID3C	138715	broad.mit.edu	37	9	34627566	34627566	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARIH2	10425	broad.mit.edu	37	3	49017947	49017947	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL6IP5	10550	broad.mit.edu	37	3	69153634	69153634	+	Silent	SNP	G	A	A	rs142221565	byFrequency;by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARNT2	9915	broad.mit.edu	37	15	80750269	80750269	+	Splice_Site	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARNTL	406	broad.mit.edu	37	11	13407083	13407083	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSK	153642	broad.mit.edu	37	5	94927395	94927395	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB4	51666	broad.mit.edu	37	7	95141822	95141822	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPHD2	57168	broad.mit.edu	37	22	26830423	26830423	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176905590	176905590	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176952053	176952053	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176979455	176979455	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	177030246	177030246	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	120169142	120169142	+	Intron	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD2	29028	broad.mit.edu	37	8	124371495	124371495	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF1	466	broad.mit.edu	37	12	51207727	51207727	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATOH1	474	broad.mit.edu	37	4	94750176	94750176	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10B	23120	broad.mit.edu	37	5	160059293	160059293	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10B	23120	broad.mit.edu	37	5	160059451	160059451	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP12A	479	broad.mit.edu	37	13	25262360	25262360	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A5	344905	broad.mit.edu	37	3	192997142	192997142	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A5	344905	broad.mit.edu	37	3	193081241	193081241	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160151864	160151864	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B3	492	broad.mit.edu	37	X	152806888	152806888	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A1	10396	broad.mit.edu	37	4	42416849	42416849	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B4	79895	broad.mit.edu	37	15	50303041	50303041	+	Splice_Site	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP9A	10079	broad.mit.edu	37	20	50224125	50224125	+	Splice_Site	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRX	546	broad.mit.edu	37	X	76855270	76855270	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11078574	11078574	+	Intron	SNP	T	A	A	rs76805569		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11096881	11096881	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69984381	69984381	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS2	583	broad.mit.edu	37	16	56531699	56531699	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCHE	590	broad.mit.edu	37	3	165503989	165503989	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC8	112401	broad.mit.edu	37	19	53793757	53793758	+	5'UTR	DNP	TG	CT	CT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLK	640	broad.mit.edu	37	8	11413053	11413053	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMF	90427	broad.mit.edu	37	15	40397991	40397991	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPER	168667	broad.mit.edu	37	7	34085917	34085917	+	Splice_Site	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNC1	646	broad.mit.edu	37	15	83933374	83933374	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNC2	54796	broad.mit.edu	37	9	16436469	16436469	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOC	91653	broad.mit.edu	37	3	112962542	112962542	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOLL	66037	broad.mit.edu	37	2	198621115	198621115	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL3	128859	broad.mit.edu	37	20	31627967	31627967	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRAF	673	broad.mit.edu	37	7	140434577	140434586	+	Intron	DEL	AAAAAAAAAG	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRDT	676	broad.mit.edu	37	1	92433651	92433651	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD1	54014	broad.mit.edu	37	21	40607685	40607685	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSX	390259	broad.mit.edu	37	11	122849973	122849973	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	108036102	108036103	+	Intron	DNP	CC	AA	AA			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN1A1	696	broad.mit.edu	37	6	26501500	26501500	+	5'UTR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZRAP1	9256	broad.mit.edu	37	17	56395576	56395576	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf40	143501	broad.mit.edu	37	11	4594490	4594490	+	Intron	SNP	G	C	C	rs78122004	byFrequency;by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf41	25758	broad.mit.edu	37	11	33622062	33622062	+	Intron	SNP	G	T	T	rs77753071		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf65	160140	broad.mit.edu	37	11	108302427	108302427	+	Intron	SNP	T	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf35	55196	broad.mit.edu	37	12	32134160	32134160	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf42	374470	broad.mit.edu	37	12	103696112	103696112	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf18	80183	broad.mit.edu	37	13	46946391	46946391	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf30	144809	broad.mit.edu	37	13	43363036	43363036	+	3'UTR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf39	196541	broad.mit.edu	37	13	103346664	103346664	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf106	55320	broad.mit.edu	37	14	45696990	45696990	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24922540	24922540	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24923778	24923778	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf95	124512	broad.mit.edu	37	17	74729619	74729619	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf2	56651	broad.mit.edu	37	18	1300787	1300787	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf2	56651	broad.mit.edu	37	18	1362712	1362712	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30873051	30873051	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf47	126526	broad.mit.edu	37	19	40829854	40829854	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QB	713	broad.mit.edu	37	1	22987946	22987946	+	3'UTR	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75086359	75086359	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf175	374977	broad.mit.edu	37	1	55134629	55134629	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf175	374977	broad.mit.edu	37	1	55167807	55167807	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf49	84066	broad.mit.edu	37	1	178489486	178489486	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf94	84970	broad.mit.edu	37	1	34667708	34667708	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf99	149992	broad.mit.edu	37	21	14437000	14437000	+	Intron	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf28	51493	broad.mit.edu	37	22	32790950	32790950	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf34	348645	broad.mit.edu	37	22	49925338	49925338	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf9	23313	broad.mit.edu	37	22	45598866	45598866	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf27A	29798	broad.mit.edu	37	2	132480054	132480054	+	5'Flank	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf39	92749	broad.mit.edu	37	2	26644233	26644233	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf39	92749	broad.mit.edu	37	2	26644336	26644336	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf77	129881	broad.mit.edu	37	2	170531214	170531214	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf20	84077	broad.mit.edu	37	3	14756870	14756870	+	Nonsense_Mutation	SNP	G	A	A	rs151168843		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf39	84892	broad.mit.edu	37	3	43121364	43121364	+	Silent	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4A	720	broad.mit.edu	37	6	31964184	31964184	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf17	84103	broad.mit.edu	37	4	100434814	100434814	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf41	153222	broad.mit.edu	37	5	172507769	172507769	+	5'UTR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf62	85027	broad.mit.edu	37	5	150174946	150174946	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41143053	41143053	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165714110	165714110	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf170	221322	broad.mit.edu	37	6	121615756	121615756	+	Silent	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf64	55776	broad.mit.edu	37	6	39078267	39078267	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf70	55780	broad.mit.edu	37	6	170158818	170158818	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7	730	broad.mit.edu	37	5	40981518	40981518	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40193668	40193668	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf71	285941	broad.mit.edu	37	7	26679698	26679698	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9	735	broad.mit.edu	37	5	39331799	39331799	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA1	759	broad.mit.edu	37	8	86250682	86250682	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181549863	181549863	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201035344	201035344	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81634805	81634805	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	2016812	2016824	+	Intron	DEL	CTGGTGGGCGTGT	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM3	57863	broad.mit.edu	37	1	159169502	159169502	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAD	790	broad.mit.edu	37	2	27460509	27460509	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALR3	125972	broad.mit.edu	37	19	16601253	16601253	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK4	814	broad.mit.edu	37	5	110814128	110814128	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN11	11131	broad.mit.edu	37	6	44148427	44148427	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN6	827	broad.mit.edu	37	X	110495773	110495773	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD18	59082	broad.mit.edu	37	11	105010674	105010674	+	5'Flank	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP1	834	broad.mit.edu	37	11	104954313	104954313	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASQ1	844	broad.mit.edu	37	1	160160848	160160848	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAV3	859	broad.mit.edu	37	3	8787262	8787262	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLB	868	broad.mit.edu	37	3	105464725	105464725	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219900484	219900484	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC129	223075	broad.mit.edu	37	7	31683378	31683378	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC138	165055	broad.mit.edu	37	2	109455614	109455614	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC141	285025	broad.mit.edu	37	2	179710525	179710525	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC21	64793	broad.mit.edu	37	1	26582344	26582345	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC87	55231	broad.mit.edu	37	11	66358918	66358918	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL15	6359	broad.mit.edu	37	17	34324762	34324762	+	3'UTR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD38	952	broad.mit.edu	37	4	15780013	15780013	+	5'UTR	DEL	C	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD93	22918	broad.mit.edu	37	20	23065248	23065248	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC25C	995	broad.mit.edu	37	5	137622186	137622186	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC6	990	broad.mit.edu	37	17	38457307	38457307	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH13	1012	broad.mit.edu	37	16	83430495	83430495	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH26	60437	broad.mit.edu	37	20	58571578	58571578	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25616459	25616459	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH3	1001	broad.mit.edu	37	16	68720494	68720494	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31287109	31287109	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63477063	63477063	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26988214	26988214	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK14	5218	broad.mit.edu	37	7	90741857	90741857	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDON	50937	broad.mit.edu	37	11	125851151	125851151	+	Silent	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM20	125931	broad.mit.edu	37	19	45033480	45033480	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP192	55125	broad.mit.edu	37	18	13096059	13096059	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP55	55165	broad.mit.edu	37	10	95286265	95286265	+	Intron	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES1	1066	broad.mit.edu	37	16	55844110	55844110	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES3	23491	broad.mit.edu	37	16	67006337	67006340	+	Frame_Shift_Del	DEL	AGGC	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR2	3080	broad.mit.edu	37	1	196918927	196918927	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD3	1107	broad.mit.edu	37	17	7794055	7794055	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD8	57680	broad.mit.edu	37	14	21868194	21868194	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	424303	424304	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHML	1122	broad.mit.edu	37	1	241798348	241798348	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136700435	136700435	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST4	10164	broad.mit.edu	37	16	71570496	71570496	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP5	9793	broad.mit.edu	37	11	46765563	46765563	+	3'UTR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLASP2	23122	broad.mit.edu	37	3	33663466	33663466	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA3P	9629	broad.mit.edu	37	1	87099957	87099957	+	5'Flank	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143039110	143039110	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN10	9071	broad.mit.edu	37	13	96229429	96229429	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN16	10686	broad.mit.edu	37	3	190127677	190127677	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC10A	10462	broad.mit.edu	37	17	6979878	6979878	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC9A	283420	broad.mit.edu	37	12	10205373	10205373	+	Silent	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLGN	1047	broad.mit.edu	37	4	141331872	141331872	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIC5	53405	broad.mit.edu	37	6	45922772	45922772	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLK2P	1197	broad.mit.edu	37	7	23625462	23625462	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLNK	116449	broad.mit.edu	37	4	10594646	10594646	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLRN1	7401	broad.mit.edu	37	3	150644579	150644579	+	3'UTR	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTCL1	8218	broad.mit.edu	37	22	19245394	19245394	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMYA5	202333	broad.mit.edu	37	5	79028950	79028950	+	Silent	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	88365807	88365807	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	88365987	88365987	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87669835	87669835	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87680164	87680164	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT1	23019	broad.mit.edu	37	16	58608824	58608824	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100061967	100061967	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99632086	99632086	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99786906	99786907	+	Intron	DNP	TG	CT	CT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99827611	99827611	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146536953	146536953	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147014487	147014487	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147097178	147097178	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP3	79937	broad.mit.edu	37	9	39178266	39178266	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103387096	103387097	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75892694	75892694	+	Intron	SNP	A	T	T	rs149154446	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32119684	32119684	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70608991	70608992	+	Intron	DNP	GG	TT	TT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70850767	70850767	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70875816	70875816	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	55939086	55939086	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139636013	139636013	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139889971	139889971	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109820389	109820389	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	110222762	110222762	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111158940	111158940	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107421840	107421841	+	Intron	INS	-	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10103898	10103898	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130285743	130285743	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COQ3	51805	broad.mit.edu	37	6	99825363	99825363	+	Splice_Site	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47643887	47643887	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47808936	47808936	+	Silent	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47840028	47840028	+	5'UTR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA5	93979	broad.mit.edu	37	7	130008321	130008321	+	Silent	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA5	93979	broad.mit.edu	37	7	130008475	130008476	+	3'UTR	DNP	CC	AT	AT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1L	1379	broad.mit.edu	37	1	207886087	207886087	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRAMP1L	57585	broad.mit.edu	37	16	1709950	1709950	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHR1	1394	broad.mit.edu	37	17	43907957	43907957	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIM1	51232	broad.mit.edu	37	2	36692018	36692018	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIPAK	285464	broad.mit.edu	37	4	1389402	1389402	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP1	167	broad.mit.edu	37	6	49825116	49825116	+	Splice_Site	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRMP1	1400	broad.mit.edu	37	4	5853585	5853585	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCC	9696	broad.mit.edu	37	1	17249187	17249187	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSDE1	7812	broad.mit.edu	37	1	115262199	115262199	+	Splice_Site	SNP	C	T	T	rs112211707		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RB	1439	broad.mit.edu	37	22	37325814	37325814	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF3R	1441	broad.mit.edu	37	1	36933320	36933321	+	Intron	DNP	CC	AA	AA			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSH2	1443	broad.mit.edu	37	17	61950767	61950767	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113266537	113266537	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113392686	113392686	+	Splice_Site	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113563015	113563015	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114111193	114111193	+	Splice_Site	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114290947	114290947	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114389119	114389119	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTF1	1489	broad.mit.edu	37	16	30910673	30910673	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11018133	11018133	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11565000	11565000	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16957945	16957945	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17169794	17169794	+	Intron	SNP	T	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43152183	43152183	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43152229	43152229	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43152442	43152442	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43152449	43152449	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43152637	43152637	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	49019322	49019322	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf21	80231	broad.mit.edu	37	X	30577880	30577880	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	35938204	35938204	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf61	203413	broad.mit.edu	37	X	115593079	115593079	+	Silent	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B2	1585	broad.mit.edu	37	8	143999131	143999131	+	Silent	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP24A1	1591	broad.mit.edu	37	20	52774206	52774206	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41395229	41395229	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41518745	41518745	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C8	1558	broad.mit.edu	37	10	96802752	96802752	+	Silent	SNP	A	T	T	rs145569162	byFrequency	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4X1	260293	broad.mit.edu	37	1	47515297	47515297	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTIP	9595	broad.mit.edu	37	2	158275081	158275081	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57973304	57973304	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	58771954	58771954	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72131078	72131078	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAP	1611	broad.mit.edu	37	5	10683615	10683615	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBC1	1620	broad.mit.edu	37	9	122012347	122012347	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF17	80067	broad.mit.edu	37	2	172314344	172314344	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L1	285429	broad.mit.edu	37	4	41984273	41984273	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCBLD1	285761	broad.mit.edu	37	6	117853331	117853331	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155219121	155219121	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155237050	155237050	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTN1	1639	broad.mit.edu	37	2	74596201	74596201	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX11	1663	broad.mit.edu	37	12	31254893	31254893	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX24	57062	broad.mit.edu	37	14	94517574	94517574	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX58	23586	broad.mit.edu	37	9	32488878	32488878	+	Silent	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND4A	10260	broad.mit.edu	37	15	66033886	66033886	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND4C	55667	broad.mit.edu	37	9	19370007	19370007	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC1	55635	broad.mit.edu	37	1	68943012	68943012	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC1	55635	broad.mit.edu	37	1	68960168	68960168	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFFB	1677	broad.mit.edu	37	1	3800259	3800259	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14620523	14620523	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137359458	137359458	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH3	81624	broad.mit.edu	37	13	60707040	60707040	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIO3	1735	broad.mit.edu	37	14	102028308	102028308	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2A	23181	broad.mit.edu	37	21	47924225	47924225	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2A	23181	broad.mit.edu	37	21	47961607	47961607	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	327243	327243	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLAT	1737	broad.mit.edu	37	11	111909915	111909915	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	31497208	31497208	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32632478	32632478	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMKN	93099	broad.mit.edu	37	19	35989562	35989562	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL1	1657	broad.mit.edu	37	5	118479492	118479492	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21659516	21659516	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21723698	21723698	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH14	127602	broad.mit.edu	37	1	225152201	225152201	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7636533	7636533	+	Silent	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13701267	13701267	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196774825	196774825	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38754733	38754733	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38950388	38950388	+	Intron	DEL	G	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11514371	11514371	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC2	27000	broad.mit.edu	37	7	102957423	102957423	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC2	27000	broad.mit.edu	37	7	102957425	102957425	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNASE2	1777	broad.mit.edu	37	19	12989465	12989465	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMBP	23268	broad.mit.edu	37	10	101654700	101654700	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169423205	169423205	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK6	220164	broad.mit.edu	37	18	67365913	67365913	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPF3	8110	broad.mit.edu	37	14	73140967	73140967	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L1	23333	broad.mit.edu	37	7	34982156	34982156	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2	283417	broad.mit.edu	37	12	64045436	64045436	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2	283417	broad.mit.edu	37	12	64045545	64045545	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCR4	10281	broad.mit.edu	37	21	39448557	39448557	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCR8	84677	broad.mit.edu	37	21	39494358	39494358	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSE	29940	broad.mit.edu	37	6	116758311	116758311	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG4	147409	broad.mit.edu	37	18	28956809	28956809	+	5'UTR	SNP	G	A	A	rs142563540	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP15	128853	broad.mit.edu	37	20	30451843	30451843	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP21	63904	broad.mit.edu	37	X	44703980	44703980	+	3'UTR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95657570	95657570	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1	22873	broad.mit.edu	37	13	96285432	96285432	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP3	9666	broad.mit.edu	37	3	108406848	108406848	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEA1	8411	broad.mit.edu	37	12	93285295	93285295	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	43995881	43995881	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55268196	55268196	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHBP1	23301	broad.mit.edu	37	2	63272278	63272278	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK3	9451	broad.mit.edu	37	2	88889990	88889990	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4A3	9775	broad.mit.edu	37	17	78109999	78109999	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF5B	9669	broad.mit.edu	37	2	99988158	99988158	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMOD1	55531	broad.mit.edu	37	11	107518319	107518319	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELN	2006	broad.mit.edu	37	7	73474517	73474517	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMCN	51705	broad.mit.edu	37	4	101439139	101439140	+	5'UTR	DNP	GG	TT	TT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMID1	129080	broad.mit.edu	37	22	29654850	29654850	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR1	2015	broad.mit.edu	37	19	6921744	6921744	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENAH	55740	broad.mit.edu	37	1	225688728	225688728	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENAH	55740	broad.mit.edu	37	1	225702735	225702735	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENAM	10117	broad.mit.edu	37	4	71497731	71497731	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX1	55068	broad.mit.edu	37	13	43798206	43798206	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA1	2041	broad.mit.edu	37	7	143088839	143088839	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66439677	66439677	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	93965714	93965714	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA8	2046	broad.mit.edu	37	1	22915265	22915265	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPRS	2058	broad.mit.edu	37	1	220205974	220205974	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPX	8288	broad.mit.edu	37	17	56272420	56272420	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPX	8288	broad.mit.edu	37	17	56280504	56280504	+	Silent	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212286761	212286761	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC8	1161	broad.mit.edu	37	5	60240852	60240852	+	5'UTR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERMN	57471	broad.mit.edu	37	2	158178306	158178306	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT3	83850	broad.mit.edu	37	3	138191065	138191065	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV5	2119	broad.mit.edu	37	3	185783743	185783743	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC2	55770	broad.mit.edu	37	6	592520	592520	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOSC9	5393	broad.mit.edu	37	4	122731324	122731324	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXTL3	2137	broad.mit.edu	37	8	28573653	28573653	+	Missense_Mutation	SNP	G	T	T	rs146905864		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA2	2139	broad.mit.edu	37	20	45717915	45717915	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	64567627	64567627	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	64814208	64814208	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EZR	7430	broad.mit.edu	37	6	159188080	159188080	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6160250	6160250	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAIM	55179	broad.mit.edu	37	3	138351858	138351858	+	Silent	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123A	219287	broad.mit.edu	37	13	25744599	25744599	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13C	220965	broad.mit.edu	37	10	61065719	61065719	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM161B	145483	broad.mit.edu	37	14	74409458	74409458	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM179B	23116	broad.mit.edu	37	14	45481232	45481232	+	Silent	SNP	T	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43626666	43626666	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM92B	339145	broad.mit.edu	37	16	85135971	85135971	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASTKD3	79072	broad.mit.edu	37	5	7863200	7863200	+	Intron	SNP	T	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92257911	92257911	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126239846	126239846	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127680325	127680325	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO24	26261	broad.mit.edu	37	7	100188004	100188004	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO4	26272	broad.mit.edu	37	5	41929975	41929975	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXW7	55294	broad.mit.edu	37	4	153273505	153273505	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157772058	157772058	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157740549	157740549	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157668027	157668027	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL6	343413	broad.mit.edu	37	1	159768575	159768575	+	5'Flank	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL6	343413	broad.mit.edu	37	1	159778370	159778370	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEM1B	10116	broad.mit.edu	37	15	68570886	68570886	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FFAR1	2864	broad.mit.edu	37	19	35842790	35842790	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	102454331	102454331	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	103053860	103053860	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	103053862	103053862	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGGY	55277	broad.mit.edu	37	1	59978163	59978163	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD3	80206	broad.mit.edu	37	18	34205813	34205813	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP1B	2281	broad.mit.edu	37	2	24276806	24276806	+	Silent	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152281636	152281636	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ37543	285668	broad.mit.edu	37	5	60982676	60982676	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ40504	284085	broad.mit.edu	37	17	26604442	26604442	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43860	389690	broad.mit.edu	37	8	142481002	142481002	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240308545	240308545	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO2	2327	broad.mit.edu	37	1	171162464	171162464	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO2	2327	broad.mit.edu	37	1	171162565	171162565	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO4	2329	broad.mit.edu	37	1	171310612	171310612	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNIP1	96459	broad.mit.edu	37	5	131042107	131042107	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89405080	89405080	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49175882	49175882	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXG1	2290	broad.mit.edu	37	14	29237975	29237975	+	3'UTR	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79447788	79447788	+	Silent	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29609735	29609735	+	5'Flank	SNP	C	T	T	rs80217185	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29616092	29616092	+	Intron	SNP	A	T	T	rs143577331	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29651121	29651121	+	Intron	SNP	G	A	A	rs145422945		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1	2483	broad.mit.edu	37	4	190871011	190871011	+	Intron	SNP	G	T	T	rs76978324		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD1	79981	broad.mit.edu	37	6	168465832	168465832	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD7	90167	broad.mit.edu	37	X	131231470	131231470	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32757014	32757014	+	Intron	SNP	T	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1L	83856	broad.mit.edu	37	9	108284612	108284612	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTO	79068	broad.mit.edu	37	16	53799836	53799836	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR2	9568	broad.mit.edu	37	9	101216263	101216263	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR2	9568	broad.mit.edu	37	9	101370111	101370111	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161324516	161324516	+	3'UTR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA6	2559	broad.mit.edu	37	5	161116276	161116276	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR3	200959	broad.mit.edu	37	3	97744292	97744292	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	154801055	154801056	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT7	51809	broad.mit.edu	37	4	174216973	174216973	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAR1	54433	broad.mit.edu	37	4	110745618	110745618	+	3'UTR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP4	115361	broad.mit.edu	37	1	89654510	89654510	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEM	2669	broad.mit.edu	37	8	95262489	95262489	+	3'UTR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH2	2689	broad.mit.edu	37	17	61958133	61958133	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH2	2689	broad.mit.edu	37	17	61958529	61958529	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42582564	42582564	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42689017	42689017	+	Silent	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPC3	126326	broad.mit.edu	37	19	3589996	3589996	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA5	2702	broad.mit.edu	37	1	147245700	147245700	+	5'Flank	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJB5	2709	broad.mit.edu	37	1	35223024	35223024	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJD4	219770	broad.mit.edu	37	10	35896733	35896733	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT25D2	23127	broad.mit.edu	37	1	183942810	183942810	+	Silent	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL2	219970	broad.mit.edu	37	11	58604937	58604937	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPS	8833	broad.mit.edu	37	3	155615689	155615689	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAI1	2770	broad.mit.edu	37	7	79846622	79846622	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNB3	2784	broad.mit.edu	37	12	6952885	6952885	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA5	9950	broad.mit.edu	37	14	93299472	93299472	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA6C	653641	broad.mit.edu	37	15	75562468	75562468	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155727103	155727103	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155784039	155784039	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPA33	10223	broad.mit.edu	37	1	167032878	167032878	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC6	10082	broad.mit.edu	37	13	94611541	94611541	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135432188	135432188	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR126	57211	broad.mit.edu	37	6	142741054	142741054	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR156	165829	broad.mit.edu	37	3	119957037	119957037	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25755589	25755589	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25887482	25887482	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR174	84636	broad.mit.edu	37	X	78426508	78426508	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR65	8477	broad.mit.edu	37	14	88477441	88477441	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR83	10888	broad.mit.edu	37	11	94113409	94113409	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPS2	2874	broad.mit.edu	37	17	7216393	7216393	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123468937	123468937	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123469695	123469695	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123471181	123471181	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB10	2887	broad.mit.edu	37	7	50742190	50742190	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11756808	11756808	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA2	2891	broad.mit.edu	37	4	158283966	158283966	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA4	2893	broad.mit.edu	37	11	105795480	105795480	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94416652	94416652	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	30949368	30949368	+	Silent	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120838160	120838160	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9857834	9857834	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIPAP1	56850	broad.mit.edu	37	X	48855786	48855786	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146720721	146720721	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88449984	88449985	+	Intron	DEL	TC	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSK3B	2932	broad.mit.edu	37	3	119748251	119748251	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM2	2946	broad.mit.edu	37	1	110211872	110211872	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM4	2948	broad.mit.edu	37	1	110198977	110198977	+	5'UTR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA2B	2981	broad.mit.edu	37	1	42620447	42620447	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106842437	106842437	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2C	2984	broad.mit.edu	37	12	14796519	14796519	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HACL1	26061	broad.mit.edu	37	3	15621483	15621483	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAGH	3029	broad.mit.edu	37	16	1872326	1872326	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS5	23354	broad.mit.edu	37	19	36109850	36109850	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC4	9759	broad.mit.edu	37	2	240097899	240097899	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR5A	25938	broad.mit.edu	37	14	31856243	31856243	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43563333	43563333	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43581637	43581637	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM2	253012	broad.mit.edu	37	7	92818570	92818570	+	3'UTR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPHL1	341208	broad.mit.edu	37	11	93779202	93779202	+	Intron	DEL	T	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81366033	81366033	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL2	79802	broad.mit.edu	37	1	222713539	222713539	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL2	79802	broad.mit.edu	37	1	222717028	222717028	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIBCH	26275	broad.mit.edu	37	2	191136791	191136791	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H4C	8364	broad.mit.edu	37	6	26104274	26104274	+	Silent	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H4H	8365	broad.mit.edu	37	6	26285577	26285577	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP2	3097	broad.mit.edu	37	6	143095280	143095280	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK1	3098	broad.mit.edu	37	10	71128269	71128269	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176308279	176308279	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HKDC1	80201	broad.mit.edu	37	10	70998835	70998835	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DRB5	3127	broad.mit.edu	37	6	32522359	32522359	+	Intron	SNP	A	G	G	rs115970154	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186107183	186107183	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGN4	10473	broad.mit.edu	37	6	26545805	26545805	+	3'UTR	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4A	3172	broad.mit.edu	37	20	43057040	43057040	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPH2	3188	broad.mit.edu	37	X	100667366	100667366	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPH3	3189	broad.mit.edu	37	10	70098868	70098868	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOOK3	84376	broad.mit.edu	37	8	42829232	42829232	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB6	3216	broad.mit.edu	37	17	46673520	46673520	+	3'UTR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXC8	3224	broad.mit.edu	37	12	54403118	54403118	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPSE2	60495	broad.mit.edu	37	10	100249961	100249961	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPX	3263	broad.mit.edu	37	11	6458394	6458394	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST3A1	9955	broad.mit.edu	37	17	13399670	13399671	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	26132920	26132920	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSP90AB4P	664618	broad.mit.edu	37	15	58984330	58984331	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA8	3312	broad.mit.edu	37	11	122928361	122928361	+	3'UTR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPH1	10808	broad.mit.edu	37	13	31735706	31735706	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTN3	3347	broad.mit.edu	37	4	70897628	70897628	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTT	3064	broad.mit.edu	37	4	3156033	3156033	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	71094281	71094281	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC3	9543	broad.mit.edu	37	15	65667452	65667452	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF1R	3480	broad.mit.edu	37	15	99500385	99500385	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGHMBP2	3508	broad.mit.edu	37	11	68673760	68673760	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	29686657	29686657	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	29973110	29973110	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL24	11009	broad.mit.edu	37	1	207073585	207073585	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL29	282618	broad.mit.edu	37	19	39788990	39788990	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL7R	3575	broad.mit.edu	37	5	35873614	35873614	+	Silent	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL7R	3575	broad.mit.edu	37	5	35876651	35876651	+	3'UTR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMMP2L	83943	broad.mit.edu	37	7	110978090	110978090	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMMP2L	83943	broad.mit.edu	37	7	111024331	111024331	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INADL	10207	broad.mit.edu	37	1	62367223	62367223	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15247237	15247237	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO9	55705	broad.mit.edu	37	1	201837746	201837746	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP1	8826	broad.mit.edu	37	15	91030665	91030665	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IREB2	3658	broad.mit.edu	37	15	78763031	78763031	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRF5	3663	broad.mit.edu	37	7	128588438	128588438	+	Intron	SNP	G	T	T	rs71312831		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRF6	3664	broad.mit.edu	37	1	209968741	209968741	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRF8	3394	broad.mit.edu	37	16	85936527	85936527	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISL1	3670	broad.mit.edu	37	5	50683308	50683308	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA10	8515	broad.mit.edu	37	1	145537867	145537867	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7774362	7774362	+	Nonsense_Mutation	SNP	C	A	A	rs150529114		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP1	152789	broad.mit.edu	37	4	6055931	6055931	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD1C	221037	broad.mit.edu	37	10	64974357	64974357	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124044878	124044878	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124412768	124412769	+	Intron	DNP	GG	TT	TT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA5	3741	broad.mit.edu	37	12	5154195	5154195	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND2	3751	broad.mit.edu	37	7	120166285	120166285	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63447944	63447944	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH6	81033	broad.mit.edu	37	17	61615561	61615561	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163696183	163696183	+	5'Flank	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP4	80333	broad.mit.edu	37	4	20852135	20852135	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK2	3776	broad.mit.edu	37	1	215345553	215345553	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36671880	36671880	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36693916	36693917	+	Intron	DNP	CC	AA	AA			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36698135	36698135	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36768278	36768278	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD8	386617	broad.mit.edu	37	4	44176901	44176901	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM2B	84678	broad.mit.edu	37	12	121881939	121881939	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM3A	55818	broad.mit.edu	37	2	86707321	86707321	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53223192	53223192	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS2	202559	broad.mit.edu	37	6	62900947	62900947	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0406	9675	broad.mit.edu	37	20	36640451	36640451	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0513	9764	broad.mit.edu	37	16	85100771	85100771	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0528	9847	broad.mit.edu	37	12	22635520	22635520	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0556	23247	broad.mit.edu	37	16	27751806	27751806	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1009	22832	broad.mit.edu	37	6	84856412	84856412	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123229064	123229064	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94156521	94156521	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1429	25962	broad.mit.edu	37	8	95503860	95503860	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1429	25962	broad.mit.edu	37	8	95507083	95507083	+	Intron	SNP	T	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1432	57589	broad.mit.edu	37	9	5763883	5763883	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1529	57653	broad.mit.edu	37	9	100077004	100077004	+	Silent	SNP	C	A	A	rs140321791		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1549	57670	broad.mit.edu	37	7	138555917	138555917	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1797	54914	broad.mit.edu	37	9	20946565	20946565	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21B	23046	broad.mit.edu	37	1	200973727	200973727	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4A	24137	broad.mit.edu	37	X	69521901	69521901	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5C	3800	broad.mit.edu	37	2	149829990	149829990	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF9	64147	broad.mit.edu	37	3	47278048	47278048	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIN	22944	broad.mit.edu	37	10	7829761	7829761	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70456616	70456616	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL38	340359	broad.mit.edu	37	8	124663935	124663935	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK12	43849	broad.mit.edu	37	19	51533926	51533926	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK1	3816	broad.mit.edu	37	19	51322429	51322429	+	3'UTR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT38	8687	broad.mit.edu	37	17	39597020	39597020	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT5	3852	broad.mit.edu	37	12	52910607	52910607	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT71	112802	broad.mit.edu	37	12	52946657	52946657	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT72	140807	broad.mit.edu	37	12	52992774	52992774	+	Silent	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT82	3888	broad.mit.edu	37	12	52794252	52794252	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT85	3891	broad.mit.edu	37	12	52757813	52757813	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT86	3892	broad.mit.edu	37	12	52698611	52698611	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-9	386676	broad.mit.edu	37	21	46047096	46047096	+	Missense_Mutation	SNP	C	A	A	rs143023999	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP11-1	337880	broad.mit.edu	37	21	32253685	32253685	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP21-1	337977	broad.mit.edu	37	21	32127527	32127527	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7016521	7016521	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129250775	129250775	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129805966	129805966	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107580467	107580467	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB3	3914	broad.mit.edu	37	1	209799187	209799187	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107692543	107692543	+	Silent	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107732893	107732893	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LANCL2	55915	broad.mit.edu	37	7	55493123	55493123	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARS	51520	broad.mit.edu	37	5	145509688	145509688	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEF1	51176	broad.mit.edu	37	4	108999219	108999219	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPREL1	55214	broad.mit.edu	37	3	189691579	189691579	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS9	3965	broad.mit.edu	37	17	25974145	25974145	+	Splice_Site	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHCGR	3973	broad.mit.edu	37	2	48919068	48919068	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHCGR	3973	broad.mit.edu	37	2	48958239	48958239	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	28635257	28635257	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPI	149998	broad.mit.edu	37	21	15561448	15561448	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LLGL1	3996	broad.mit.edu	37	17	18145077	18145077	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMLN	89782	broad.mit.edu	37	3	197701875	197701875	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMTK2	22853	broad.mit.edu	37	7	97821992	97821992	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMX1A	4009	broad.mit.edu	37	1	165182622	165182622	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148176199	148176199	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC442308	442308	broad.mit.edu	37	7	55713845	55713845	+	RNA	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91819747	91819747	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22380800	22380800	+	5'Flank	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62812910	62812910	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPP	4026	broad.mit.edu	37	3	188124213	188124213	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151749751	151749751	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40439967	40439967	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42220070	42220070	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42355793	42355793	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42356551	42356551	+	Silent	SNP	C	A	A	rs17854265		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRMP	4033	broad.mit.edu	37	12	25232546	25232546	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP11	84918	broad.mit.edu	37	6	150164031	150164031	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141135677	141135677	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141283652	141283652	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141441493	141441493	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141607711	141607711	+	Silent	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40136113	40136113	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC69	100130742	broad.mit.edu	37	8	92170502	92170502	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101552319	101552319	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33359884	33359884	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUC7L	55692	broad.mit.edu	37	16	242939	242939	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	25098977	25098977	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY9	4063	broad.mit.edu	37	1	160786463	160786463	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA10	4109	broad.mit.edu	37	X	151304177	151304177	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB6	158809	broad.mit.edu	37	X	26211920	26211920	+	5'UTR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77756547	77756547	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1C1	57134	broad.mit.edu	37	1	26073289	26073289	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1B	4131	broad.mit.edu	37	5	71495423	71495423	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K5	5607	broad.mit.edu	37	15	68065133	68065133	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K4	9448	broad.mit.edu	37	2	102486715	102486715	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK4	5596	broad.mit.edu	37	18	48190905	48190905	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH6	10299	broad.mit.edu	37	5	10415778	10415778	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH6	10299	broad.mit.edu	37	5	10423299	10423299	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK1	4139	broad.mit.edu	37	1	220771719	220771719	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST1	22983	broad.mit.edu	37	19	12958233	12958233	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBIP	51562	broad.mit.edu	37	14	36785985	36785985	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCART3P	442229	broad.mit.edu	37	6	66498456	66498456	+	RNA	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCCC1	56922	broad.mit.edu	37	3	182763143	182763143	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90371106	90371106	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13	9969	broad.mit.edu	37	17	60040135	60040135	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED23	9439	broad.mit.edu	37	6	131917629	131917629	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126667082	126667082	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEOX1	4222	broad.mit.edu	37	17	41719206	41719206	+	3'UTR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEOX2	4223	broad.mit.edu	37	7	15692479	15692479	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MERTK	10461	broad.mit.edu	37	2	112740432	112740432	+	Silent	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT4C	25834	broad.mit.edu	37	12	86383169	86383169	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR376A2	664615	broad.mit.edu	37	14	101506417	101506417	+	RNA	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR518C	574477	broad.mit.edu	37	19	54211956	54211956	+	5'Flank	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR622	693207	broad.mit.edu	37	13	90882757	90882757	+	5'Flank	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR708	100126333	broad.mit.edu	37	11	79113123	79113123	+	RNA	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR890	100126303	broad.mit.edu	37	X	145075861	145075861	+	RNA	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKRN3	7681	broad.mit.edu	37	15	23811059	23811059	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMD	23531	broad.mit.edu	37	17	53491505	53491505	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MME	4311	broad.mit.edu	37	3	154889820	154889820	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP11	4320	broad.mit.edu	37	22	24123581	24123581	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP3	4314	broad.mit.edu	37	11	102713683	102713683	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOSC2	54996	broad.mit.edu	37	1	220928449	220928449	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP5	64398	broad.mit.edu	37	14	67799811	67799811	+	3'UTR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRC2	9902	broad.mit.edu	37	17	60742177	60742177	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX2	117194	broad.mit.edu	37	11	19077943	19077943	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX3	117195	broad.mit.edu	37	11	18158601	18158601	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRI1	84245	broad.mit.edu	37	19	13875414	13875414	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRS2	57380	broad.mit.edu	37	6	24415199	24415199	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRTO4	51154	broad.mit.edu	37	1	19584405	19584405	+	Silent	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A10	341116	broad.mit.edu	37	11	60559882	60559882	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH3	4437	broad.mit.edu	37	5	80064744	80064744	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTL5	9633	broad.mit.edu	37	11	68506352	68506352	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTO1	25821	broad.mit.edu	37	6	74207359	74207359	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTTP	4547	broad.mit.edu	37	4	100527854	100527854	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	29599885	29599885	+	Silent	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9016505	9016505	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUT	4594	broad.mit.edu	37	6	49399587	49399587	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUT	4594	broad.mit.edu	37	6	49409509	49409509	+	Intron	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBL2	4605	broad.mit.edu	37	20	42311268	42311268	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYEOV2	150678	broad.mit.edu	37	2	241069409	241069409	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15917148	15917148	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10432292	10432292	+	Missense_Mutation	SNP	G	T	T	rs142095822		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23884725	23884725	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26184659	26184659	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26388390	26388390	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171034773	171034773	+	5'UTR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171458602	171458602	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7A	4647	broad.mit.edu	37	11	76841710	76841710	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYST3	7994	broad.mit.edu	37	8	41790452	41790452	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA25	80018	broad.mit.edu	37	12	112481006	112481006	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	20101754	20101754	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78392159	78392159	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	35622687	35622687	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145579396	145579396	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCEH1	57552	broad.mit.edu	37	3	172351586	172351586	+	Silent	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA2	10499	broad.mit.edu	37	8	71082319	71082319	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCR1	9437	broad.mit.edu	37	19	55421559	55421559	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCS1	23413	broad.mit.edu	37	9	132980043	132980043	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFS2	4720	broad.mit.edu	37	1	161180182	161180182	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20699739	20699739	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20907025	20907025	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70417870	70417870	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO2	81831	broad.mit.edu	37	16	47156703	47156703	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29657349	29657349	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29657351	29657351	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204873441	204873441	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC4	4776	broad.mit.edu	37	14	24846005	24846005	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFIX	4784	broad.mit.edu	37	19	13201202	13201202	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKB1	4790	broad.mit.edu	37	4	103534469	103534469	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKBID	84807	broad.mit.edu	37	19	36387021	36387021	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKBIZ	64332	broad.mit.edu	37	3	101576069	101576070	+	Intron	INS	-	T	T	rs6806934		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPBL	25836	broad.mit.edu	37	5	37000950	37000950	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPBL	25836	broad.mit.edu	37	5	37027499	37027499	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NISCH	11188	broad.mit.edu	37	3	52511764	52511764	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4Y	22829	broad.mit.edu	37	Y	16936082	16936082	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247587725	247587726	+	Missense_Mutation	DNP	GG	CT	CT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56543981	56543981	+	Silent	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMUR1	10316	broad.mit.edu	37	2	232392702	232392702	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOV	4856	broad.mit.edu	37	8	120435364	120435364	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS3	64067	broad.mit.edu	37	14	34095270	34095270	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHP1	4867	broad.mit.edu	37	2	110883158	110883158	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36342405	36342405	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR3	4883	broad.mit.edu	37	5	32712591	32712591	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP2	8828	broad.mit.edu	37	2	206641178	206641178	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50699546	50699546	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50850776	50850776	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50861444	50861445	+	Intron	DNP	GG	TT	TT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSDHL	50814	broad.mit.edu	37	X	152037205	152037205	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131350899	131350899	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131723550	131723550	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131818017	131818017	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132098671	132098671	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132187790	132187790	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132205042	132205042	+	3'UTR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88576314	88576314	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUFIP1	26747	broad.mit.edu	37	13	45553203	45553203	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP214	8021	broad.mit.edu	37	9	134026140	134026140	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUS1	116150	broad.mit.edu	37	6	118015118	118015118	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF2B	728343	broad.mit.edu	37	X	101623622	101623622	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228543940	228543940	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167642069	167642069	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183245189	183245189	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183291857	183291858	+	Intron	DNP	CA	AG	AG			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78413266	78413266	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGN	4969	broad.mit.edu	37	9	95147854	95147854	+	3'UTR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLAH	55301	broad.mit.edu	37	10	15115235	15115235	+	3'UTR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM4	10562	broad.mit.edu	37	13	53602862	53602862	+	5'Flank	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN4	94233	broad.mit.edu	37	10	88420997	88420997	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G4	390264	broad.mit.edu	37	11	123886982	123886982	+	Missense_Mutation	SNP	G	T	T	rs145730171		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10S1	219873	broad.mit.edu	37	11	123847658	123847658	+	Silent	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10Z1	128368	broad.mit.edu	37	1	158576722	158576722	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13G1	441933	broad.mit.edu	37	1	247835664	247835664	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1J2	26740	broad.mit.edu	37	9	125274125	125274125	+	3'UTR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A12	346525	broad.mit.edu	37	7	143793059	143793059	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L1P	26247	broad.mit.edu	37	1	248154230	248154230	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M3	127062	broad.mit.edu	37	1	248366583	248366583	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M5	127059	broad.mit.edu	37	1	248308812	248308812	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M7	391196	broad.mit.edu	37	1	248487588	248487588	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T10	127069	broad.mit.edu	37	1	248756268	248756268	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W5	441932	broad.mit.edu	37	1	247655361	247655361	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K1	79544	broad.mit.edu	37	14	20404030	20404030	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K2	390431	broad.mit.edu	37	14	20344724	20344724	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K5	79317	broad.mit.edu	37	14	20388794	20388794	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51A7	119687	broad.mit.edu	37	11	4929496	4929496	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51F1	256892	broad.mit.edu	37	11	4790884	4790885	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51V1	283111	broad.mit.edu	37	11	5221342	5221342	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56B4	196335	broad.mit.edu	37	11	6129676	6129676	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B17	219965	broad.mit.edu	37	11	58126124	58126124	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B2	390190	broad.mit.edu	37	11	58189978	58189978	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L1	219437	broad.mit.edu	37	11	55578881	55578881	+	5'Flank	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M1	390168	broad.mit.edu	37	11	56381041	56381041	+	5'Flank	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6A2	8590	broad.mit.edu	37	11	6816690	6816690	+	Missense_Mutation	SNP	C	G	G	rs111641381		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9Q1	219956	broad.mit.edu	37	11	57815808	57815808	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC3L	23595	broad.mit.edu	37	6	88375549	88375549	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OS9	10956	broad.mit.edu	37	12	58112603	58112603	+	Intron	SNP	G	T	T	rs140284286	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL8	114882	broad.mit.edu	37	12	76777907	76777907	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBP	5007	broad.mit.edu	37	11	59344401	59344401	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOA	146183	broad.mit.edu	37	16	21739470	21739470	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD3	23252	broad.mit.edu	37	1	20234286	20234286	+	3'UTR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29598179	29598180	+	Intron	DNP	CC	AA	AA			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29617462	29617462	+	Frame_Shift_Del	DEL	G	-	-	rs117919494	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY12	64805	broad.mit.edu	37	3	151056493	151056493	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC5	140886	broad.mit.edu	37	X	90690787	90690787	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPN1	8106	broad.mit.edu	37	14	23792260	23792260	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI3	51702	broad.mit.edu	37	1	17586048	17586048	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPD7	11044	broad.mit.edu	37	5	6742740	6742740	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176501791	176501791	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176608349	176608349	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176659552	176659552	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176734924	176734924	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176779051	176779051	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	118982343	118982343	+	Silent	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAQR7	164091	broad.mit.edu	37	1	26189367	26189367	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP4	143	broad.mit.edu	37	13	25024057	25024057	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARVB	29780	broad.mit.edu	37	22	44527484	44527484	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAWR	5074	broad.mit.edu	37	12	79986434	79986434	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX2	5076	broad.mit.edu	37	10	102522683	102522683	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX3	5077	broad.mit.edu	37	2	223086091	223086091	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX6	5080	broad.mit.edu	37	11	31823443	31823443	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134084246	134084246	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91873877	91873877	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55780237	55780237	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	57024858	57024858	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA11	56138	broad.mit.edu	37	5	140249750	140249750	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA11	56138	broad.mit.edu	37	5	140249785	140249785	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA3	56145	broad.mit.edu	37	5	140181097	140181097	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHAC1	56135	broad.mit.edu	37	5	140307154	140307154	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB18	54660	broad.mit.edu	37	5	140614889	140614889	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB8	56128	broad.mit.edu	37	5	140559784	140559784	+	Silent	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA2	56113	broad.mit.edu	37	5	140720008	140720008	+	Silent	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA3	56112	broad.mit.edu	37	5	140725094	140725094	+	Silent	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB1	56104	broad.mit.edu	37	5	140730252	140730252	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82545566	82545566	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK2	5126	broad.mit.edu	37	20	17290559	17290559	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178635368	178635368	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	32282597	32282597	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4D	5144	broad.mit.edu	37	5	59754828	59754829	+	Intron	DNP	GT	TG	TG	rs56310406		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	54954010	54954010	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55136873	55136873	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDHA2	5161	broad.mit.edu	37	4	96761995	96761995	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5B	23047	broad.mit.edu	37	13	33347329	33347329	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEAR1	375033	broad.mit.edu	37	1	156873717	156873717	+	5'UTR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEAR1	375033	broad.mit.edu	37	1	156880522	156880522	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX1	5189	broad.mit.edu	37	7	92120953	92120953	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGCP	10404	broad.mit.edu	37	8	97891898	97891898	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR3	116154	broad.mit.edu	37	20	58248679	58248679	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGS	94005	broad.mit.edu	37	17	26881093	26881093	+	3'UTR	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106508576	106508576	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PILRB	29990	broad.mit.edu	37	7	99964558	99964558	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1P1	206426	broad.mit.edu	37	6	7986800	7986800	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130839068	130839068	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L3	342372	broad.mit.edu	37	16	71988099	71988099	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD2	5311	broad.mit.edu	37	4	88940614	88940614	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110477130	110477130	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G7	7941	broad.mit.edu	37	6	46680136	46680136	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28828816	28828816	+	Splice_Site	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLBD1	79887	broad.mit.edu	37	12	14706144	14706144	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9453573	9453573	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9457271	9457271	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCH1	23007	broad.mit.edu	37	3	155241685	155241685	+	Splice_Site	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198949933	198949933	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL2	23228	broad.mit.edu	37	3	17077145	17077145	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242355198	242355198	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242355220	242355220	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242511370	242511370	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA2	59339	broad.mit.edu	37	8	38803790	38803790	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131831476	131831476	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131888148	131888148	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131947568	131947568	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2	5395	broad.mit.edu	37	7	6031560	6031560	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP2	5408	broad.mit.edu	37	10	118386478	118386478	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNO1	56902	broad.mit.edu	37	2	68385364	68385364	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLB	5423	broad.mit.edu	37	8	42210134	42210134	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121212997	121212997	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3B	55703	broad.mit.edu	37	12	106890557	106890557	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POR	5447	broad.mit.edu	37	7	75552589	75552589	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38143443	38143443	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTED	317754	broad.mit.edu	37	21	15013641	15013641	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19563492	19563492	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEH	23784	broad.mit.edu	37	22	16267010	16267010	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1A	10891	broad.mit.edu	37	4	23814841	23814841	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81839380	81839380	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIBP1	8496	broad.mit.edu	37	12	27786365	27786365	+	Silent	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R3C	5507	broad.mit.edu	37	10	93389661	93389661	+	3'UTR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R3F	89801	broad.mit.edu	37	X	49142834	49142834	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R8	5511	broad.mit.edu	37	1	28176600	28176600	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R9A	55607	broad.mit.edu	37	7	94740708	94740708	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146087111	146087111	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAME	23532	broad.mit.edu	37	22	22890528	22890528	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRCC	5546	broad.mit.edu	37	1	156756484	156756484	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRCC	5546	broad.mit.edu	37	1	156760925	156760926	+	Intron	DNP	GG	TT	TT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM13	59336	broad.mit.edu	37	6	100056533	100056533	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23521200	23521200	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23526560	23526560	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47248785	47248785	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47412650	47412650	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	68950332	68950332	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRICKLE2	166336	broad.mit.edu	37	3	64132470	64132470	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57389262	57389262	+	Intron	DEL	G	-	-	rs5876591		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57420202	57420202	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57480976	57480976	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAR1A	5573	broad.mit.edu	37	17	66518895	66518896	+	Splice_Site	DNP	AG	TT	TT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAR1B	5575	broad.mit.edu	37	7	655856	655856	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCG	5582	broad.mit.edu	37	19	54403989	54403989	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48772321	48772321	+	Splice_Site	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48805957	48805957	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT3	10196	broad.mit.edu	37	11	20529995	20529995	+	3'UTR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROL1	58503	broad.mit.edu	37	4	71275726	71275726	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF6	24148	broad.mit.edu	37	20	62616311	62616311	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR16	51334	broad.mit.edu	37	5	120021732	120021732	+	Silent	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRC1	133619	broad.mit.edu	37	5	126860309	126860309	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142459927	142459927	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142460072	142460072	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS38	339501	broad.mit.edu	37	1	228003843	228003843	+	Silent	SNP	C	G	G	rs113353225	byFrequency;by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSAT1	29968	broad.mit.edu	37	9	80919661	80919661	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSEN2	5664	broad.mit.edu	37	1	227079330	227079330	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSENEN	55851	broad.mit.edu	37	19	36237643	36237643	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43679348	43679348	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSKH2	85481	broad.mit.edu	37	8	87076703	87076703	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMB10	5699	broad.mit.edu	37	16	67970091	67970091	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMB7	5695	broad.mit.edu	37	9	127174492	127174492	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD7	5713	broad.mit.edu	37	16	74336183	74336183	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGFRN	5738	broad.mit.edu	37	1	117505559	117505559	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTN	5764	broad.mit.edu	37	7	137028346	137028346	+	Translation_Start_Site	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPLB	201562	broad.mit.edu	37	3	123219500	123219501	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70963527	70963527	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	71002929	71002929	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198725066	198725066	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128298010	128298010	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40730641	40730641	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41180290	41180290	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121659302	121659302	+	Silent	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRIG	79037	broad.mit.edu	37	7	99817788	99817788	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52320774	52320774	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXN	5829	broad.mit.edu	37	12	120650328	120650328	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9311070	9311070	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QRFPR	84109	broad.mit.edu	37	4	122254118	122254118	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB28	9364	broad.mit.edu	37	4	13386050	13386050	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB40AL	282808	broad.mit.edu	37	X	102193080	102193080	+	Silent	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RACGAP1	29127	broad.mit.edu	37	12	50390950	50390950	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36192258	36192258	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP2	5903	broad.mit.edu	37	2	109383270	109383270	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP7	116362	broad.mit.edu	37	1	10068244	10068244	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1P	5969	broad.mit.edu	37	2	79364218	79364218	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1P	5969	broad.mit.edu	37	2	79364233	79364233	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103136875	103136875	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103163670	103163670	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REN	5972	broad.mit.edu	37	1	204126464	204126464	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX4	5992	broad.mit.edu	37	12	107114577	107114577	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGMB	285704	broad.mit.edu	37	5	98128924	98128924	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	241083224	241083224	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	241262108	241262108	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHAG	6005	broad.mit.edu	37	6	49586980	49586980	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOBTB2	23221	broad.mit.edu	37	8	22873257	22873257	+	Splice_Site	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOQ	23433	broad.mit.edu	37	2	46793057	46793057	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHO	6010	broad.mit.edu	37	3	129247966	129247966	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHPN2	85415	broad.mit.edu	37	19	33493811	33493811	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104897987	104897987	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87016655	87016655	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87896571	87896571	+	Intron	SNP	G	A	A	rs112335412		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE9	390443	broad.mit.edu	37	14	21024699	21024699	+	Missense_Mutation	SNP	C	T	T	rs147407456	byFrequency	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF168	165918	broad.mit.edu	37	3	196198808	196198808	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF20	56254	broad.mit.edu	37	9	104323711	104323711	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	78710149	78710149	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	79174643	79174643	+	Silent	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124757413	124757413	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR2	4920	broad.mit.edu	37	9	94487276	94487276	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10466151	10466151	+	Silent	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10466368	10466368	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10470657	10470657	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE65	6121	broad.mit.edu	37	1	68898291	68898291	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS4Y2	140032	broad.mit.edu	37	Y	22942809	22942809	+	Intron	DEL	A	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRN3	54700	broad.mit.edu	37	16	15162158	15162158	+	Intron	SNP	T	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSL1D1	26156	broad.mit.edu	37	16	11940535	11940535	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH1	89765	broad.mit.edu	37	21	43892924	43892924	+	3'UTR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH9	221421	broad.mit.edu	37	6	43638529	43638529	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPRY1	89970	broad.mit.edu	37	16	57264753	57264753	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSRC1	51319	broad.mit.edu	37	3	158178688	158178688	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237617677	237617677	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237923091	237923091	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237941969	237941969	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SACS	26278	broad.mit.edu	37	13	23909957	23909957	+	Silent	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL4	57167	broad.mit.edu	37	20	50401195	50401195	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD13	148418	broad.mit.edu	37	1	84791496	84791496	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD5	389432	broad.mit.edu	37	6	147885381	147885381	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAPS2	9701	broad.mit.edu	37	22	50854595	50854595	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBDS	51119	broad.mit.edu	37	7	66458404	66458404	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGB1C1	147199	broad.mit.edu	37	11	190158	190158	+	5'Flank	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165947017	165947017	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDHA	6389	broad.mit.edu	37	5	236605	236605	+	Silent	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC14L1	6397	broad.mit.edu	37	17	75212642	75212642	+	3'UTR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L2	80343	broad.mit.edu	37	20	13856806	13856806	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELENBP1	8991	broad.mit.edu	37	1	151339452	151339452	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9356883	9356883	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5B	54437	broad.mit.edu	37	3	122679799	122679799	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPHS1	22929	broad.mit.edu	37	10	13378430	13378430	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA5	5104	broad.mit.edu	37	14	95053670	95053670	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB11	89778	broad.mit.edu	37	18	61377383	61377383	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB13	5275	broad.mit.edu	37	18	61256061	61256061	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB7	8710	broad.mit.edu	37	18	61468323	61468323	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINE3	647174	broad.mit.edu	37	13	51915550	51915550	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26643921	26643921	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26691846	26691846	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFTA3	253970	broad.mit.edu	37	14	36982411	36982411	+	5'UTR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFXN4	119559	broad.mit.edu	37	10	120914478	120914478	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BGR	6450	broad.mit.edu	37	21	40863653	40863653	+	Intron	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3D19	152503	broad.mit.edu	37	4	152049490	152049490	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC2	79628	broad.mit.edu	37	5	148384189	148384189	+	3'UTR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC3	53358	broad.mit.edu	37	9	91689956	91689956	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHQ1	55164	broad.mit.edu	37	3	72893552	72893552	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC8	27181	broad.mit.edu	37	19	51958819	51958819	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIM1	6492	broad.mit.edu	37	6	100862014	100862014	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164704960	164704960	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164748519	164748519	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164777880	164777880	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKA3	221150	broad.mit.edu	37	13	21742230	21742230	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKIV2L2	23517	broad.mit.edu	37	5	54652278	54652278	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A6	345274	broad.mit.edu	37	4	87770057	87770057	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	42897148	42897148	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A3	57419	broad.mit.edu	37	20	19398754	19398754	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A21	89874	broad.mit.edu	37	14	37157255	37157255	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A24	29957	broad.mit.edu	37	1	108728433	108728433	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A31	83447	broad.mit.edu	37	4	128665813	128665813	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92307883	92307883	+	Silent	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A1	9154	broad.mit.edu	37	15	85478468	85478468	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A3	6515	broad.mit.edu	37	12	8085593	8085593	+	Missense_Mutation	SNP	G	T	T	rs146026720		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A7	155184	broad.mit.edu	37	1	9083086	9083086	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A9	56606	broad.mit.edu	37	4	9910058	9910058	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35B3	51000	broad.mit.edu	37	6	8421089	8421089	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18331729	18331729	+	Silent	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A2	51151	broad.mit.edu	37	5	33947415	33947415	+	Silent	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170214316	170214316	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40387815	40387815	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40656449	40656449	+	Silent	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143140229	143140229	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B1	10599	broad.mit.edu	37	12	21392039	21392039	+	Silent	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20619043	20619043	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144906230	144906230	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA1	6594	broad.mit.edu	37	X	128631001	128631001	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCB1	6598	broad.mit.edu	37	22	24143088	24143088	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG5	23381	broad.mit.edu	37	1	156244414	156244414	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOX	54498	broad.mit.edu	37	20	4163480	4163480	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPD4	55627	broad.mit.edu	37	2	130934013	130934013	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD114-16	767594	broad.mit.edu	37	14	101439185	101439185	+	5'Flank	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRNP200	23020	broad.mit.edu	37	2	96953036	96953036	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1251325	1251325	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1285284	1285284	+	Intron	SNP	G	A	A	rs113659235		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX18	112574	broad.mit.edu	37	5	53814569	53814569	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX24	28966	broad.mit.edu	37	5	122281795	122281795	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX7	51375	broad.mit.edu	37	1	99225509	99225509	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121360805	121360805	+	Silent	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	23797267	23797267	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX6	55553	broad.mit.edu	37	11	16036488	16036488	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231174839	231174839	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN1	494118	broad.mit.edu	37	X	144336802	144336802	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA16	83893	broad.mit.edu	37	3	172834930	172834930	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA5	166378	broad.mit.edu	37	4	123946204	123946204	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35641530	35641530	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35800281	35800281	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35806992	35806992	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228886677	228886677	+	Silent	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINT4	391253	broad.mit.edu	37	20	44352467	44352467	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPON1	10418	broad.mit.edu	37	11	14195160	14195160	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPON1	10418	broad.mit.edu	37	11	14263410	14263410	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55658777	55658777	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158623221	158623221	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158627308	158627308	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158639340	158639340	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRF	6722	broad.mit.edu	37	6	43141555	43141555	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRF	6722	broad.mit.edu	37	6	43146516	43146516	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP3	9901	broad.mit.edu	37	3	9057434	9057434	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPX	8406	broad.mit.edu	37	X	38023952	38023952	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL1	6482	broad.mit.edu	37	8	134488142	134488142	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAMBP	10617	broad.mit.edu	37	2	74077294	74077294	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAP1	26228	broad.mit.edu	37	4	68447163	68447163	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT3	6774	broad.mit.edu	37	17	40481632	40481633	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT5B	6777	broad.mit.edu	37	17	40354611	40354611	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK10	6793	broad.mit.edu	37	5	171509831	171509831	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK10	6793	broad.mit.edu	37	5	171509904	171509905	+	Intron	DNP	CC	TT	TT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK31	56164	broad.mit.edu	37	7	23883094	23883094	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STMN2	11075	broad.mit.edu	37	8	80553737	80553737	+	Silent	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STOML1	9399	broad.mit.edu	37	15	74284508	74284508	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STS	412	broad.mit.edu	37	X	7175688	7175688	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX4	6810	broad.mit.edu	37	16	31046142	31046142	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1B1	27284	broad.mit.edu	37	4	70615457	70615457	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN2	25777	broad.mit.edu	37	22	39134735	39134735	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2C	22987	broad.mit.edu	37	5	75427517	75427517	+	5'UTR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113208110	113208110	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2L	221711	broad.mit.edu	37	6	10899007	10899007	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64469443	64469443	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT14	255928	broad.mit.edu	37	1	210194461	210194461	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT16	83851	broad.mit.edu	37	14	62541877	62541877	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT9	143425	broad.mit.edu	37	11	7384966	7384966	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAB1	10454	broad.mit.edu	37	22	39813817	39813817	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TADA2A	6871	broad.mit.edu	37	17	35802677	35802677	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF7L	54457	broad.mit.edu	37	X	100533134	100533134	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC2	26115	broad.mit.edu	37	17	61369685	61369685	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANK	10010	broad.mit.edu	37	2	162061320	162061320	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TASP1	55617	broad.mit.edu	37	20	13374174	13374174	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D3G	654341	broad.mit.edu	37	17	34797757	34797757	+	Missense_Mutation	SNP	G	A	A	rs142949917		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX3	6926	broad.mit.edu	37	12	115120979	115120979	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEB3B	51224	broad.mit.edu	37	18	44561157	44561157	+	Missense_Mutation	SNP	A	G	G	rs151287064	byFrequency	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF23	150921	broad.mit.edu	37	2	27375463	27375463	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCTN2	79867	broad.mit.edu	37	12	124184347	124184347	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD1	56165	broad.mit.edu	37	10	115973205	115973205	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECPR2	9895	broad.mit.edu	37	14	102916811	102916811	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX101	83639	broad.mit.edu	37	19	43920716	43920716	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2B	7021	broad.mit.edu	37	6	50808146	50808146	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBRAP1	9392	broad.mit.edu	37	2	105885840	105885840	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133895170	133895170	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	134144116	134144116	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137912858	137912858	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32524991	32524991	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43772922	43772922	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	167020606	167020606	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98170137	98170137	+	Silent	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM9SF4	9777	broad.mit.edu	37	20	30738501	30738501	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC4	147798	broad.mit.edu	37	19	54664217	54664217	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM117	84216	broad.mit.edu	37	12	44403868	44403868	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM186	25880	broad.mit.edu	37	16	8889645	8889645	+	3'UTR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM194A	23306	broad.mit.edu	37	12	57466502	57466502	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15427214	15427214	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM38B	55151	broad.mit.edu	37	9	108522027	108522027	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM38B	55151	broad.mit.edu	37	9	108536317	108536317	+	Missense_Mutation	SNP	G	T	T	rs146683657		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM84	283673	broad.mit.edu	37	15	69364685	69364685	+	5'Flank	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS4	56649	broad.mit.edu	37	11	117984017	117984017	+	Silent	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC3	160418	broad.mit.edu	37	12	88542250	88542250	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNC	3371	broad.mit.edu	37	9	117840453	117840453	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFAIP8L3	388121	broad.mit.edu	37	15	51350531	51350531	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF10A	8797	broad.mit.edu	37	8	23058197	23058197	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS1BP1	85456	broad.mit.edu	37	11	57077082	57077082	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS1BP1	85456	broad.mit.edu	37	11	57080341	57080341	+	Silent	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74701274	74701274	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74901798	74901798	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175049230	175049230	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175096171	175096171	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175323467	175323467	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	A	A	rs28934576	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPD52	7163	broad.mit.edu	37	8	80992708	80992708	+	5'UTR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH2	121278	broad.mit.edu	37	12	72372742	72372742	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPM3	7170	broad.mit.edu	37	1	154164571	154164571	+	Translation_Start_Site	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1440084	1440084	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186296841	186296841	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10909473	10909474	+	Intron	DNP	GG	TT	TT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3IP3	80342	broad.mit.edu	37	1	209936199	209936199	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3	7187	broad.mit.edu	37	14	103369718	103369718	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREM1	54210	broad.mit.edu	37	6	41250492	41250492	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRMT6	51605	broad.mit.edu	37	20	5922538	5922538	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72951990	72951990	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72962973	72962973	+	Intron	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC6	7225	broad.mit.edu	37	11	101323842	101323842	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC6	7225	broad.mit.edu	37	11	101359687	101359687	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98560277	98560277	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSEN2	80746	broad.mit.edu	37	3	12571270	12571270	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81499215	81499215	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51869993	51869993	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51870769	51870769	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN17	26262	broad.mit.edu	37	5	176083133	176083133	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSSK1B	83942	broad.mit.edu	37	5	112770252	112770252	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSSK3	81629	broad.mit.edu	37	1	32829729	32829729	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC12	54970	broad.mit.edu	37	11	113236795	113236795	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC15	51112	broad.mit.edu	37	2	3405623	3405623	+	Missense_Mutation	SNP	G	T	T	rs143418079		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21B	79809	broad.mit.edu	37	2	166799852	166799852	+	Splice_Site	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC24	164118	broad.mit.edu	37	1	156555590	156555590	+	Silent	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC26	79989	broad.mit.edu	37	7	138858534	138858534	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC39B	158219	broad.mit.edu	37	9	15175154	15175154	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC3	7267	broad.mit.edu	37	21	38537944	38537944	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC7B	145567	broad.mit.edu	37	14	91196223	91196223	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF1	7270	broad.mit.edu	37	9	135277845	135277845	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF2	8458	broad.mit.edu	37	1	117626662	117626662	+	Silent	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL2	83887	broad.mit.edu	37	6	167754214	167754214	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179470391	179470391	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179493929	179493929	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179522282	179522282	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC2	84203	broad.mit.edu	37	18	9887622	9887622	+	Silent	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37903124	37903124	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2MP1	606551	broad.mit.edu	37	16	34404402	34404402	+	RNA	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBP1	7342	broad.mit.edu	37	3	33438574	33438574	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCK2	7371	broad.mit.edu	37	1	165877066	165877066	+	3'UTR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2A1	10941	broad.mit.edu	37	4	70505157	70505158	+	Intron	DNP	GA	TG	TG			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B10	7365	broad.mit.edu	37	4	69885815	69885815	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A2	167127	broad.mit.edu	37	5	36066762	36066762	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMODL1	89766	broad.mit.edu	37	21	43495966	43495966	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33510436	33510436	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33510569	33510569	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126208048	126208048	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215972282	215972282	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216246778	216246779	+	Intron	DNP	GG	AT	AT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216370093	216370093	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP13	8975	broad.mit.edu	37	3	179463225	179463225	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP17L2	377630	broad.mit.edu	37	8	11995836	11995836	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP6	55813	broad.mit.edu	37	17	30195071	30195071	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	19568784	19568784	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	36073474	36073474	+	IGR	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	36221651	36221651	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38743975	38743975	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38989719	38989719	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42658177	42658177	+	IGR	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42672516	42672516	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	44192572	44192572	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	65928843	65928843	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	71192665	71192665	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8332683	8332683	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8337503	8337503	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8462572	8462572	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	93426744	93426744	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	103664687	103664687	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	112723762	112723762	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124387096	124387096	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	133429148	133429148	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	14958325	14958325	+	IGR	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	15903664	15903664	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	17073998	17073998	+	IGR	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	22334819	22334819	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	22336252	22336252	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	25470162	25470162	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	28526918	28526918	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	29322340	29322340	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	38469799	38469799	+	IGR	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	43545532	43545532	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4459256	4459256	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48547701	48547701	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49119807	49119807	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49336798	49336798	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50129410	50129410	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50129886	50129886	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51426182	51426182	+	IGR	SNP	C	A	A	rs5000498		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55059842	55059842	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55156425	55156425	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56508270	56508270	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	67519185	67519185	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	94782803	94782803	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	108275209	108275209	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	115449185	115449185	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31397319	31397319	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34464704	34464704	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	37937873	37937873	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	5475455	5475455	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61456654	61456654	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	63396631	63396631	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	63692635	63692635	+	IGR	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	66049013	66049013	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	77340567	77340567	+	IGR	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	85333399	85333399	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	90147199	90147199	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	111642358	111642358	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	20699948	20699948	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	33575252	33575252	+	IGR	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	49218806	49218806	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	53804839	53804839	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	53894005	53894005	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	55339028	55339028	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	59480509	59480509	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	83719880	83719880	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	85139345	85139345	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	86928528	86928528	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	100431308	100431308	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19118286	19118286	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19476423	19476423	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20316026	20316026	+	IGR	SNP	T	C	C	rs148500109	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20400610	20400610	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	25901473	25901473	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	26894098	26894098	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	28385707	28385707	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	39657108	39657108	+	IGR	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	39684366	39684366	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43398039	43398039	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43809770	43809770	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45759159	45759159	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	57512357	57512357	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	66367970	66367970	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96057518	96057518	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96099052	96099052	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97096655	97096655	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97754890	97754890	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20104754	20104754	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20413634	20413634	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20435908	20435908	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20833865	20833865	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22148803	22148803	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	55051969	55051969	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	56615952	56615952	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	60523121	60523121	+	IGR	DEL	G	-	-	rs66944161		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	72671786	72671786	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	80106500	80106500	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	81720177	81720177	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	88918898	88918898	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	98688027	98688027	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	26534047	26534047	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	27033633	27033634	+	IGR	DNP	GG	TT	TT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32183004	32183004	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32369743	32369743	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33366874	33366874	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33391672	33391672	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33422233	33422233	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33499124	33499124	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33605619	33605619	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33817918	33817918	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34660435	34660435	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34878673	34878673	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	49050230	49050230	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	49050756	49050756	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	51679851	51679851	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	51891167	51891167	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	52992836	52992836	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60872938	60872938	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	77569947	77569947	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	79651731	79651731	+	IGR	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	82573309	82573309	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	13197044	13197044	+	IGR	SNP	C	T	T	rs35788133		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20483149	20483149	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21556222	21556222	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25274854	25274854	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25277551	25277551	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25283872	25283872	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	35125875	35125875	+	IGR	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51834871	51834871	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52032075	52032075	+	IGR	DEL	G	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	70300580	70300580	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	75637403	75637403	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	23391489	23391489	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	23679091	23679091	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	35191023	35191023	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39327827	39327827	+	IGR	SNP	T	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	44042255	44042255	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	5003130	5003130	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	76363379	76363379	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	8840904	8840904	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22869201	22869202	+	IGR	DNP	CT	TA	TA			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31443095	31443098	+	IGR	DEL	CTTT	-	-	rs12459562	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31558913	31558913	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31585288	31585288	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31694189	31694189	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31957251	31957251	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	36464742	36464742	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53819243	53819243	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55208605	55208605	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55208987	55208987	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106696267	106696267	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	120114100	120114100	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	13141739	13141739	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143495539	143495539	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143537870	143537870	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158694157	158694157	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159249597	159249597	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	161525744	161525745	+	IGR	DNP	GG	TT	TT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	164325958	164325958	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	164993593	164993593	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166015064	166015064	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166244984	166244984	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	175235460	175235460	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	175836204	175836204	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	187048458	187048458	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191989199	191989199	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	199297574	199297574	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	213902368	213902368	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	215016426	215016426	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	220487346	220487346	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	222572295	222572295	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	222985785	222985785	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	228969352	228969353	+	IGR	DEL	GT	-	-	rs146559101		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	230573004	230573004	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	237073262	237073262	+	IGR	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	238655712	238655712	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247886775	247886775	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248605050	248605050	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248743279	248743279	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	30984700	30984700	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	37590635	37590635	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	38697657	38697657	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	5248327	5248327	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	59521789	59521789	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	67463796	67463797	+	IGR	INS	-	AC	AC	rs141699015	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	73451229	73451229	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	73571986	73571986	+	IGR	DEL	C	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	754742	754742	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	81359951	81359951	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	87759767	87759767	+	IGR	SNP	A	G	G	rs111501894	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	88230563	88230563	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	10315390	10315390	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	16768775	16768775	+	IGR	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	16768780	16768780	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29601095	29601095	+	IGR	SNP	G	C	C	rs35574062		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	38326828	38326828	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	39207201	39207201	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	51454835	51454835	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	55363507	55363507	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10717029	10717029	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10862733	10862734	+	IGR	DNP	CC	AA	AA			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20617202	20617203	+	IGR	DNP	GG	TT	TT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	32435324	32435324	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	40098056	40098056	+	IGR	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16054653	16054653	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16350374	16350374	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16352378	16352378	+	IGR	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	19619432	19619432	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	28116093	28116093	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34986969	34986969	+	IGR	SNP	G	T	T	rs117048535	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	48791528	48791528	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	105136219	105136219	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	108307143	108307143	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117979052	117979052	+	IGR	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	118439390	118439390	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	119365363	119365363	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	119441461	119441461	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	12123864	12123865	+	IGR	DNP	GG	TT	TT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	123117002	123117002	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	123238743	123238743	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	124092291	124092291	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	127633218	127633218	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	129759605	129759605	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132349466	132349466	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132769503	132769503	+	IGR	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	134710659	134710659	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	13497478	13497478	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	140426396	140426396	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	14968973	14968973	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	156126216	156126216	+	IGR	SNP	T	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162358147	162358147	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168302391	168302391	+	IGR	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17036451	17036451	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17066143	17066143	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	183936711	183936711	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186540989	186540989	+	IGR	SNP	T	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	192746890	192746890	+	IGR	SNP	G	T	T	rs145773590	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	195052321	195052321	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	195052797	195052797	+	IGR	SNP	G	T	T	rs115200611	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	209938395	209938395	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	213834218	213834218	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	217607103	217607103	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	222809357	222809357	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	229116786	229116786	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	234698890	234698890	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	235489032	235489032	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	23637262	23637262	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	319409	319409	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	3810595	3810595	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	49075492	49075492	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	49119988	49119988	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	57993099	57993099	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	63870793	63870793	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	6636706	6636706	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	72085041	72085041	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	72211315	72211315	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	76226124	76226124	+	IGR	SNP	T	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	78819967	78819967	+	IGR	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81421876	81421876	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81423640	81423640	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81992687	81992687	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91789877	91789877	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91973334	91973334	+	IGR	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	95618926	95618926	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	98018808	98018808	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	115065716	115065716	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116774369	116774369	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	122380342	122380342	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	123743441	123743441	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	129753993	129753993	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	140351694	140351694	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	155830503	155830503	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	157583644	157583644	+	IGR	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	167891674	167891674	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	174053412	174053412	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	182347732	182347732	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	1947417	1947418	+	IGR	DNP	CC	AA	AA			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	195281644	195281644	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	197363864	197363864	+	IGR	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	3476466	3476466	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	55432518	55432518	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75264623	75264623	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	76852654	76852654	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	81977810	81977810	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87620095	87620095	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96069202	96069202	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96285471	96285471	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	104859954	104859958	+	IGR	DEL	GGAGG	-	-	rs112018968		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	105039653	105039653	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116780051	116780051	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	126180556	126180556	+	IGR	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	152941177	152941177	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	160320920	160320920	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	161314803	161314803	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	161898869	161898869	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	166471690	166471690	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	17144556	17144556	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	171597211	171597211	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	17429553	17429553	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	181300289	181300289	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	18342334	18342334	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190599748	190599748	+	IGR	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190628221	190628221	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190655327	190655327	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28825079	28825079	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	29004561	29004561	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	36918546	36918546	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	39694	39694	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	42838858	42838858	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	4795045	4795045	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49149538	49149538	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	60625836	60625836	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	64215892	64215892	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	65297974	65297974	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	66971782	66971782	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70276715	70276715	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70283863	70283863	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	115106521	115106521	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	117371666	117371666	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	117758443	117758443	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	12116771	12116771	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	123321944	123321944	+	IGR	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	12485908	12485908	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	125017884	125017884	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	127122252	127122252	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	130236273	130236273	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	143352894	143352894	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	144910123	144910123	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	152472354	152472354	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	152808021	152808021	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	15489742	15489742	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	17747881	17747881	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20304137	20304137	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20304944	20304944	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	31040541	31040541	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	32835035	32835035	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	41709023	41709023	+	IGR	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	44111657	44111657	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	44958695	44958695	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	50917959	50917959	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	50935192	50935192	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	5774891	5774891	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7261456	7261456	+	IGR	SNP	A	G	G	rs116770092	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7291101	7291101	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75216968	75216968	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	99403434	99403434	+	IGR	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	100498661	100498661	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	108307271	108307271	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	115903600	115903600	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	120792637	120792637	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	122004711	122004711	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	123157715	123157715	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	132594121	132594121	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	14071528	14071528	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	14621829	14621829	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	14715320	14715321	+	IGR	DNP	TG	AT	AT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	156465689	156465689	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27979367	27979367	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	28938113	28938113	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	3608219	3608219	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	37565465	37565465	+	IGR	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	40717020	40717020	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	41635414	41635414	+	IGR	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	54159888	54159888	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	54489537	54489537	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57518130	57518130	+	IGR	SNP	C	T	T	rs113817882		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57972983	57972983	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57983436	57983436	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	5811242	5811242	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	6043787	6043787	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63556601	63556601	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63570680	63570680	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63572103	63572103	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	7517896	7517896	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80467278	80467278	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	82973988	82973988	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85555649	85555649	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	87249941	87249941	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	96439341	96439341	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	98627489	98627489	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	99634548	99634548	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10815196	10815196	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	109048207	109048207	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	110135610	110135610	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	110215434	110215434	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	111300189	111300189	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	112012047	112012047	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	116873039	116873039	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	118233610	118233610	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	118520558	118520558	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	119210404	119210404	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142587213	142587213	+	IGR	SNP	T	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	148347305	148347305	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	14952854	14952854	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	150311412	150311412	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	153119433	153119433	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	153164344	153164344	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41166401	41166401	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41541484	41541484	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41576607	41576607	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	42835753	42835753	+	IGR	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	46265720	46265720	+	IGR	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	47119580	47119580	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	48885994	48885994	+	IGR	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	48886665	48886665	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	48886978	48886978	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	49637484	49637484	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	52204473	52204473	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53930442	53930442	+	IGR	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55291444	55291444	+	IGR	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57297915	57297915	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57298648	57298648	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57557544	57557544	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57660701	57660701	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63036259	63036259	+	IGR	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63961801	63961801	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84506127	84506127	+	IGR	DEL	G	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	85498736	85498736	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88268919	88268919	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	90998376	90998376	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	92627367	92627367	+	IGR	SNP	C	T	T	rs111717201		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	106247058	106247058	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	111821826	111821826	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	117292514	117292514	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	123359980	123359980	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	132158060	132158060	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	136827843	136827843	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	137037922	137037922	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	13858427	13858427	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	13880733	13880733	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138842530	138842542	+	IGR	DEL	TGGGGCCATTTTA	-	-	rs140519175		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	41971427	41971427	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43125631	43125631	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43416681	43416681	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43528099	43528099	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47350098	47350098	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47526119	47526119	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	48076559	48076559	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5151181	5151181	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	65796125	65796125	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	6973532	6973532	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	77016849	77016849	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89906344	89906344	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	96893726	96893726	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	109879162	109879162	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	121260161	121260161	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	121323709	121323709	+	IGR	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	122167828	122167828	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	131915619	131915619	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	134658067	134658067	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	25928268	25928268	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	26699731	26699731	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	27608754	27608754	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	27610258	27610258	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44077123	44077123	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44114425	44114425	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44175349	44175349	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68370620	68370620	+	IGR	SNP	C	T	T	rs144806128	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68375364	68375364	+	IGR	SNP	T	A	A	rs149189253	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68416882	68416883	+	IGR	INS	-	T	T	rs149366845		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68425045	68425045	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68468765	68468765	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68468784	68468784	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68477693	68477693	+	IGR	SNP	A	C	C	rs146431617	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	73072334	73072334	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78124129	78124129	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	81196536	81196536	+	IGR	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	92923432	92923432	+	IGR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	120003423	120003423	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	127261368	127261368	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134776674	134776674	+	IGR	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144712710	144712710	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	147279762	147279762	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	27537197	27537197	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	36746535	36746535	+	IGR	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	61999477	61999477	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	80845664	80845664	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89544945	89544945	+	IGR	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	10015495	10015495	+	IGR	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	28479013	28479014	+	IGR	DNP	GA	TT	TT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59017117	59017117	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59020308	59020308	+	IGR	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9934906	9934906	+	IGR	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9985030	9985030	+	IGR	SNP	G	C	C	rs139159268		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAMP7	6845	broad.mit.edu	37	X	155119359	155119359	+	Intron	DEL	G	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VARS2	57176	broad.mit.edu	37	6	30882661	30882661	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101194690	101194690	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101196963	101196963	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38916284	38916285	+	Intron	DEL	AC	-	-	rs36040224		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSNL1	7447	broad.mit.edu	37	2	17815375	17815375	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSTM1	284415	broad.mit.edu	37	19	54561570	54561570	+	Silent	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWC2	375567	broad.mit.edu	37	7	49828098	49828098	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6105471	6105471	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP2NL	164684	broad.mit.edu	37	22	42397321	42397321	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85687333	85687333	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY4	57705	broad.mit.edu	37	10	50154993	50154993	+	Silent	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR60	55112	broad.mit.edu	37	7	158677276	158677276	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54694328	54694328	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFDC9	259240	broad.mit.edu	37	20	44237256	44237256	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32410743	32410743	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWP1	11059	broad.mit.edu	37	8	87410449	87410450	+	Intron	DNP	TG	AT	AT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWTR1	25937	broad.mit.edu	37	3	149374755	149374755	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168101434	168101434	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR4	114786	broad.mit.edu	37	8	56015490	56015490	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR6	286046	broad.mit.edu	37	8	10757077	10757077	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN1	54464	broad.mit.edu	37	3	142123763	142123763	+	Silent	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YAF2	10138	broad.mit.edu	37	12	42554667	42554667	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF1	54432	broad.mit.edu	37	1	54331985	54331985	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAP70	7535	broad.mit.edu	37	2	98353331	98353331	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB17	7709	broad.mit.edu	37	1	16270075	16270075	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB17	7709	broad.mit.edu	37	1	16274778	16274778	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31816208	31816208	+	3'UTR	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77764407	77764407	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77765642	77765642	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77776276	77776276	+	Silent	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP106	64397	broad.mit.edu	37	15	42742934	42742934	+	Silent	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106767145	106767145	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106813563	106813563	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106813565	106813565	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZHX2	22882	broad.mit.edu	37	8	123966331	123966331	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM2	23619	broad.mit.edu	37	19	57286984	57286984	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM3	114026	broad.mit.edu	37	19	57650108	57650108	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ1	57178	broad.mit.edu	37	10	81065350	81065350	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF195	7748	broad.mit.edu	37	11	3381315	3381315	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF226	7769	broad.mit.edu	37	19	44676161	44676161	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF284	342909	broad.mit.edu	37	19	44590210	44590210	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF292	23036	broad.mit.edu	37	6	87965088	87965088	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF362	149076	broad.mit.edu	37	1	33760819	33760819	+	Silent	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF366	167465	broad.mit.edu	37	5	71743017	71743017	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF366	167465	broad.mit.edu	37	5	71756118	71756118	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF366	167465	broad.mit.edu	37	5	71756208	71756208	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF366	167465	broad.mit.edu	37	5	71757137	71757137	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21467010	21467010	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21552355	21552355	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF425	155054	broad.mit.edu	37	7	148802280	148802280	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF430	80264	broad.mit.edu	37	19	21217086	21217086	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF461	92283	broad.mit.edu	37	19	37149259	37149259	+	Silent	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF485	220992	broad.mit.edu	37	10	44101199	44101199	+	5'Flank	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF512	84450	broad.mit.edu	37	2	27824139	27824139	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF519	162655	broad.mit.edu	37	18	14105633	14105633	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30935733	30935733	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF568	374900	broad.mit.edu	37	19	37428163	37428163	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF572	137209	broad.mit.edu	37	8	125987818	125987818	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF577	84765	broad.mit.edu	37	19	52381733	52381733	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF582	147948	broad.mit.edu	37	19	56901331	56901331	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	60050	60050	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	66044	66044	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF607	84775	broad.mit.edu	37	19	38189751	38189751	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF623	9831	broad.mit.edu	37	8	144733541	144733541	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF654	55279	broad.mit.edu	37	3	88188515	88188515	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF695	57116	broad.mit.edu	37	1	247163267	247163267	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185800734	185800734	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22941185	22941185	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238048719	238048719	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238050025	238050025	+	Intron	SNP	T	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238052830	238052830	+	Intron	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN10	84891	broad.mit.edu	37	16	3140535	3140535	+	Silent	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	3702831	3702831	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30891025	30891025	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30921177	30921177	+	RNA	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101518897	101518897	+	5'Flank	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19856978	19856978	+	RNA	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22891576	22891576	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	23011100	23011101	+	Intron	DNP	CC	AA	AA			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	38278135	38278135	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	88532194	88532194	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20592466	20592466	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20597116	20597116	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20651276	20651276	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	35934526	35934526	+	Intron	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	62539478	62539478	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	94368581	94368581	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32077156	32077156	+	5'Flank	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34980227	34980227	+	5'Flank	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	3144031	3144031	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	12319755	12319755	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22803353	22803353	+	Intron	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142658062	142658062	+	Intron	SNP	C	A	A	rs145634415		TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143462538	143462538	+	Intron	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	10172525	10172525	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89231132	89231132	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89416835	89416835	+	RNA	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89495480	89495480	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90028753	90028753	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90418609	90418609	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96610833	96610833	+	5'Flank	SNP	A	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180538690	180538690	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	82370074	82370074	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	8451429	8451429	+	Intron	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	14656133	14656133	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	182055051	182055051	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190816159	190816159	+	Intron	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69342025	69342025	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	116778288	116778288	+	Intron	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	164026051	164026051	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	25261692	25261692	+	5'Flank	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	102021039	102021039	+	Intron	SNP	A	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	106176260	106176260	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	106272400	106272400	+	Intron	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142099838	142099838	+	Intron	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142498860	142498860	+	RNA	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57696516	57696516	+	5'Flank	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	30207310	30207310	+	5'Flank	SNP	G	T	T	rs148487746	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66455330	66455330	+	Intron	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66460251	66460251	+	5'Flank	SNP	C	G	G			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66464297	66464297	+	Intron	SNP	A	G	G	rs150552466	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	10914	10914	+	RNA	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	12947	12947	+	RNA	SNP	T	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	14985	14985	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	16488	16488	+	RNA	SNP	C	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	7321	7321	+	Silent	SNP	G	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
psiTPTE22	387590	broad.mit.edu	37	22	17178566	17178566	+	RNA	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
