Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	6560489	6560489	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7222650	7222650	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7296591	7296591	+	Intron	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7402472	7402472	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AAGAB	79719	broad.mit.edu	37	15	67514316	67514316	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67197867	67197867	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	66996112	66996112	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17453721	17453721	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100560912	100560912	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACADSB	36	broad.mit.edu	37	10	124793961	124793961	+	Silent	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACBD6	84320	broad.mit.edu	37	1	180291717	180291717	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	32334953	32334953	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCSL	390110	broad.mit.edu	37	11	44072648	44072648	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOXL	55289	broad.mit.edu	37	2	111847850	111847850	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTA2	59	broad.mit.edu	37	10	90746436	90746436	+	Intron	SNP	G	A	A	rs111675393		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVR1B	91	broad.mit.edu	37	12	52377796	52377796	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	127934273	127934273	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM17	6868	broad.mit.edu	37	2	9683351	9683351	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM2	2515	broad.mit.edu	37	8	39610878	39610878	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106093876	106093876	+	Intron	SNP	G	A	A	rs79169220		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106632307	106632307	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33863206	33863206	+	Intron	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33865831	33865831	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5268149	5268149	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84355263	84355263	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84367251	84367251	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131972549	131972549	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF3	3899	broad.mit.edu	37	2	100652479	100652479	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	87288682	87288682	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	49289670	49289670	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	50207739	50207739	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	50223160	50223160	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGRP	181	broad.mit.edu	37	16	67517006	67517006	+	Silent	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHSA2	130872	broad.mit.edu	37	2	61407604	61407604	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIG1	51390	broad.mit.edu	37	6	143501952	143501952	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP13	11214	broad.mit.edu	37	15	86270342	86270342	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	32832920	32832920	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKD1	221264	broad.mit.edu	37	6	109859732	109859732	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKNA	80709	broad.mit.edu	37	9	117131053	117131053	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B1	231	broad.mit.edu	37	7	134133038	134133038	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73646508	73646508	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALX4	60529	broad.mit.edu	37	11	44296990	44296990	+	Silent	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMOTL1	154810	broad.mit.edu	37	11	94536188	94536188	+	Intron	SNP	G	A	A	rs138121742	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD11	29123	broad.mit.edu	37	16	89341375	89341375	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD55	79722	broad.mit.edu	37	5	55483002	55483002	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD55	79722	broad.mit.edu	37	5	55515801	55515801	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD6	22881	broad.mit.edu	37	6	90322046	90322046	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5961448	5961448	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26416417	26416417	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO6	196527	broad.mit.edu	37	12	45708606	45708606	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1G2	8906	broad.mit.edu	37	14	24032623	24032623	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APLF	200558	broad.mit.edu	37	2	68753795	68753795	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP2	116984	broad.mit.edu	37	4	36072140	36072140	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGEF2	10564	broad.mit.edu	37	20	47606011	47606011	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP12	94134	broad.mit.edu	37	10	32185034	32185034	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP21	57584	broad.mit.edu	37	10	24886990	24886990	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP24	83478	broad.mit.edu	37	4	86552240	86552240	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP42	143872	broad.mit.edu	37	11	100845519	100845519	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156937639	156937639	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID2	196528	broad.mit.edu	37	12	46274805	46274805	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ART3	419	broad.mit.edu	37	4	77022301	77022301	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AR	367	broad.mit.edu	37	X	66808258	66808258	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB14	142686	broad.mit.edu	37	3	57319495	57319495	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCC3	10973	broad.mit.edu	37	6	101017081	101017081	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCC3	10973	broad.mit.edu	37	6	101326276	101326276	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155451020	155451020	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPH	444	broad.mit.edu	37	8	62605678	62605678	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPN	54829	broad.mit.edu	37	9	95229653	95229653	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176914828	176914828	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	177123382	177123382	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119294713	119294713	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119988953	119988953	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF2	1386	broad.mit.edu	37	2	175941174	175941174	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATHL1	80162	broad.mit.edu	37	11	294091	294091	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATIC	471	broad.mit.edu	37	2	216191769	216191769	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A1	476	broad.mit.edu	37	1	116931663	116931663	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATPBD4	89978	broad.mit.edu	37	15	35776490	35776490	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRX	546	broad.mit.edu	37	X	76851139	76851139	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11064649	11064649	+	Intron	SNP	G	C	C	rs76731709		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69908639	69908639	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BANK1	55024	broad.mit.edu	37	4	102429413	102429414	+	Intron	DNP	TG	CT	CT			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BATF3	55509	broad.mit.edu	37	1	212861096	212861096	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33420040	33420040	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLMH	642	broad.mit.edu	37	17	28599790	28599790	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP6	654	broad.mit.edu	37	6	7859219	7859219	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP7	655	broad.mit.edu	37	20	55800333	55800333	+	Intron	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR1B	658	broad.mit.edu	37	4	95804145	95804145	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD9	65980	broad.mit.edu	37	5	876252	876252	+	Silent	SNP	G	A	A	rs143034112		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BST2	684	broad.mit.edu	37	19	17515102	17515102	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTG1	694	broad.mit.edu	37	12	92494798	92494798	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf11	83938	broad.mit.edu	37	10	78110941	78110941	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf11	83938	broad.mit.edu	37	10	78191798	78191798	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf28	27291	broad.mit.edu	37	10	99955150	99955150	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf71	118461	broad.mit.edu	37	10	50532115	50532115	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf79	80217	broad.mit.edu	37	10	105970796	105970796	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf9	745	broad.mit.edu	37	11	61539137	61539137	+	Silent	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf34	79866	broad.mit.edu	37	13	73327077	73327077	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf104	55172	broad.mit.edu	37	14	50101405	50101405	+	Silent	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf33	196951	broad.mit.edu	37	15	49638527	49638527	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf1	753	broad.mit.edu	37	18	13592278	13592278	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf101	257044	broad.mit.edu	37	1	244691458	244691458	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf101	257044	broad.mit.edu	37	1	244751740	244751740	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf49	84066	broad.mit.edu	37	1	178489648	178489648	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf94	84970	broad.mit.edu	37	1	34636608	34636608	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf34	79823	broad.mit.edu	37	2	44953755	44953755	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf86	51057	broad.mit.edu	37	2	63696521	63696521	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf32	51066	broad.mit.edu	37	3	8669568	8669568	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf40	401137	broad.mit.edu	37	4	71019977	71019977	+	Intron	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf51	285636	broad.mit.edu	37	5	41907766	41907766	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf142	90523	broad.mit.edu	37	6	54095182	54095182	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf167	253714	broad.mit.edu	37	6	97720972	97720972	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf176	90632	broad.mit.edu	37	6	166399884	166399884	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf191	253582	broad.mit.edu	37	6	130161755	130161755	+	Intron	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40848231	40848231	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120654797	120654797	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120710436	120710436	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf41	138199	broad.mit.edu	37	9	77598775	77598775	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACHD1	57685	broad.mit.edu	37	1	65027384	65027384	+	Intron	DEL	C	-	-	rs55655337		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13325397	13325397	+	Silent	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13339481	13339481	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2386459	2386459	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG8	59283	broad.mit.edu	37	19	54466466	54466466	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	85702136	85702136	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS	8618	broad.mit.edu	37	3	62681555	62681555	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALN1	83698	broad.mit.edu	37	7	71428547	71428547	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK1D	57118	broad.mit.edu	37	10	12747241	12747241	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARTPT	9607	broad.mit.edu	37	5	71014529	71014529	+	5'Flank	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC2	255082	broad.mit.edu	37	10	119949147	119949147	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP7	840	broad.mit.edu	37	10	115438691	115438691	+	5'Flank	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC102B	79839	broad.mit.edu	37	18	66480510	66480510	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC110	256309	broad.mit.edu	37	4	186379522	186379522	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC135	84229	broad.mit.edu	37	16	57741439	57741439	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC148	130940	broad.mit.edu	37	2	159103165	159103165	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC27	148870	broad.mit.edu	37	1	3677865	3677865	+	Silent	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC46	201134	broad.mit.edu	37	17	64010008	64010008	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC73	493860	broad.mit.edu	37	11	32768881	32768881	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC93	54520	broad.mit.edu	37	2	118705599	118705599	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCR3	1232	broad.mit.edu	37	3	46218633	46218633	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD28	940	broad.mit.edu	37	2	204602250	204602250	+	3'UTR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD55	1604	broad.mit.edu	37	1	207510813	207510813	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD84	8832	broad.mit.edu	37	1	160541189	160541189	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD96	10225	broad.mit.edu	37	3	111342558	111342558	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC20B	166979	broad.mit.edu	37	5	54409984	54409984	+	3'UTR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21961824	21961824	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH16	1014	broad.mit.edu	37	16	66948486	66948486	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19550725	19550725	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19690928	19690928	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH4	1002	broad.mit.edu	37	20	59871327	59871336	+	Intron	DEL	GTGTGCGTGG	-	-	rs147618869	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK14	5218	broad.mit.edu	37	7	90599885	90599885	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK15	65061	broad.mit.edu	37	2	202695237	202695237	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP2	55755	broad.mit.edu	37	9	123167373	123167373	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDYL	9425	broad.mit.edu	37	6	4850578	4850578	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214826278	214826278	+	Silent	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CERKL	375298	broad.mit.edu	37	2	182528452	182528452	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHCHD6	84303	broad.mit.edu	37	3	126497141	126497141	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD1L	9557	broad.mit.edu	37	1	146765545	146765545	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHM	1121	broad.mit.edu	37	X	85121467	85121467	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136551561	136551561	+	5'Flank	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLASP1	23332	broad.mit.edu	37	2	122208675	122208675	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLASP1	23332	broad.mit.edu	37	2	122211728	122211728	+	Intron	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA2	9635	broad.mit.edu	37	1	86916226	86916227	+	Intron	DNP	TG	GT	GT			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	139660076	139660076	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74334529	74334529	+	Silent	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100044846	100044846	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100170119	100170120	+	Missense_Mutation	DNP	GC	AA	AA			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99386774	99386774	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99673837	99673837	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146864812	146864812	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147022351	147022351	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147924959	147924959	+	Intron	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	148018295	148018295	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125294297	125294297	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125300142	125300142	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125624314	125624314	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL13A1	1305	broad.mit.edu	37	10	71570318	71570318	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86469797	86469797	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86559760	86559760	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A3BP	10087	broad.mit.edu	37	5	74770847	74770847	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A4	1286	broad.mit.edu	37	2	227924919	227924919	+	Silent	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COMMD10	51397	broad.mit.edu	37	5	115610742	115610742	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPA	1314	broad.mit.edu	37	1	160260037	160260037	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CP	1356	broad.mit.edu	37	3	148894025	148894025	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRELD1	78987	broad.mit.edu	37	3	9979890	9979890	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIM1	51232	broad.mit.edu	37	2	36623951	36623951	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP2	7180	broad.mit.edu	37	6	49667525	49667525	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP3	10321	broad.mit.edu	37	6	49705488	49705488	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSAG1	158511	broad.mit.edu	37	X	151904269	151904269	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3263487	3263487	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3266830	3266830	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3488010	3488010	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	4232321	4232321	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34138411	34138411	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113256648	113256648	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113259903	113259903	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113358405	113358405	+	Silent	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113521639	113521639	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114355163	114355163	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSTF3	1479	broad.mit.edu	37	11	33127080	33127080	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80225334	80225334	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80400879	80400879	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80602461	80602461	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	68537553	68537553	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	68803262	68803262	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNB1	1499	broad.mit.edu	37	3	41266113	41266113	+	Missense_Mutation	SNP	C	T	T	rs121913403		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11107961	11107963	+	Intron	DEL	GAT	-	-	rs61754615		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSK	1513	broad.mit.edu	37	1	150778253	150778253	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWC27	10283	broad.mit.edu	37	5	64118873	64118873	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	35993678	35993678	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C18	1562	broad.mit.edu	37	10	96457411	96457411	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C19	1557	broad.mit.edu	37	10	96556872	96556872	+	Intron	SNP	A	T	T	rs144109353		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C19	1557	broad.mit.edu	37	10	96602692	96602692	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP39A1	51302	broad.mit.edu	37	6	46619887	46619887	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4V2	285440	broad.mit.edu	37	4	187129782	187129782	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4V2	285440	broad.mit.edu	37	4	187129791	187129791	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTH3	9265	broad.mit.edu	37	7	6263836	6263836	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAAM1	23002	broad.mit.edu	37	14	59797409	59797409	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBC1	1620	broad.mit.edu	37	9	121994743	121994743	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF7	10238	broad.mit.edu	37	17	61645450	61645450	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCN	1634	broad.mit.edu	37	12	91572168	91572168	+	Silent	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCUN1D2	55208	broad.mit.edu	37	13	114128538	114128538	+	Silent	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX11	1663	broad.mit.edu	37	12	31236920	31236920	+	Silent	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169342711	169342711	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1A	57706	broad.mit.edu	37	9	126380663	126380663	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1B	163486	broad.mit.edu	37	1	197566946	197566946	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGCR2	9993	broad.mit.edu	37	22	19044613	19044613	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHTKD1	55526	broad.mit.edu	37	10	12136103	12136103	+	Silent	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX8	1659	broad.mit.edu	37	17	41572467	41572467	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIS3L2	129563	broad.mit.edu	37	2	233077784	233077784	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	84641508	84641508	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG5	9231	broad.mit.edu	37	10	79572163	79572163	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32475359	32475359	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRT1	1761	broad.mit.edu	37	9	925065	925065	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124362659	124362659	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13845203	13845203	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13908679	13908679	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH6	1768	broad.mit.edu	37	2	84931175	84931175	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11737947	11737947	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI2	64446	broad.mit.edu	37	17	72281229	72281229	+	Frame_Shift_Del	DEL	G	-	-	rs35985071	byFrequency	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC6	9829	broad.mit.edu	37	1	65749731	65749731	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK1	1793	broad.mit.edu	37	10	128799497	128799497	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK7	85440	broad.mit.edu	37	1	62958218	62958218	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK7	85440	broad.mit.edu	37	1	63056273	63056273	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	348137	348137	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK5	55816	broad.mit.edu	37	20	53171696	53171696	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOT1L	84444	broad.mit.edu	37	19	2210653	2210653	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	115649123	115649123	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116534940	116534940	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116598276	116598276	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	153584867	153584867	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L1	23333	broad.mit.edu	37	7	35013802	35013802	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	42055246	42055246	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32364443	32364443	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95510393	95510393	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E4F1	1877	broad.mit.edu	37	16	2278466	2278466	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EAF1	85403	broad.mit.edu	37	3	15473879	15473879	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDIL3	10085	broad.mit.edu	37	5	83571879	83571879	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDN1	1906	broad.mit.edu	37	6	12289331	12289331	+	5'Flank	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	44075091	44075091	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHB	151651	broad.mit.edu	37	3	19926243	19926243	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHC2	80258	broad.mit.edu	37	X	44182879	44182879	+	Intron	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFR3B	22979	broad.mit.edu	37	2	25273748	25273748	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD2	9343	broad.mit.edu	37	17	42945326	42945326	+	Intron	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55242465	55242479	+	In_Frame_Del	DEL	GGAATTAAGAGAAGC	-	-	rs121913421		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHBP1L1	254102	broad.mit.edu	37	11	65357336	65357336	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3H	8667	broad.mit.edu	37	8	117768021	117768022	+	Nonsense_Mutation	DNP	CC	AT	AT			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G3	8672	broad.mit.edu	37	1	21226345	21226345	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37257366	37257366	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO2	63916	broad.mit.edu	37	20	45017995	45017995	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELP4	26610	broad.mit.edu	37	11	31642239	31642239	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML1	2009	broad.mit.edu	37	14	100353381	100353381	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX1	55068	broad.mit.edu	37	13	44013451	44013451	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX2	10495	broad.mit.edu	37	X	129779736	129779736	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP3	5169	broad.mit.edu	37	6	131985271	131985271	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP7	339221	broad.mit.edu	37	17	77707189	77707189	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD1	953	broad.mit.edu	37	10	97562321	97562321	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41	2035	broad.mit.edu	37	1	29319783	29319783	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66189735	66189735	+	3'UTR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134594256	134594256	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS15	2060	broad.mit.edu	37	1	51944029	51944029	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212972179	212972179	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESD	2098	broad.mit.edu	37	13	47355862	47355862	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESPNP	284729	broad.mit.edu	37	1	17040606	17040606	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETS1	2113	broad.mit.edu	37	11	128376329	128376329	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVC	2121	broad.mit.edu	37	4	5720978	5720978	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI5	7813	broad.mit.edu	37	1	93011524	93011524	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC2	55770	broad.mit.edu	37	6	668506	668506	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA3	2140	broad.mit.edu	37	1	28345094	28345094	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133783355	133783355	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	65348783	65348783	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6318523	6318523	+	Intron	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F2	2147	broad.mit.edu	37	11	46744885	46744885	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154129464	154129464	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FADS2	9415	broad.mit.edu	37	11	61608169	61608169	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM107B	83641	broad.mit.edu	37	10	14634607	14634607	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM110B	90362	broad.mit.edu	37	8	58978995	58978995	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM110B	90362	broad.mit.edu	37	8	58982054	58982054	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM120B	84498	broad.mit.edu	37	6	170686414	170686414	+	Intron	SNP	C	G	G	rs151022433	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM129A	116496	broad.mit.edu	37	1	184824719	184824719	+	Intron	SNP	C	G	G	rs147601972	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM133A	286499	broad.mit.edu	37	X	92964563	92964563	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM134B	54463	broad.mit.edu	37	5	16519699	16519700	+	Intron	INS	-	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM172A	83989	broad.mit.edu	37	5	93164825	93164825	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM189A1	23359	broad.mit.edu	37	15	29572365	29572365	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM189A1	23359	broad.mit.edu	37	15	29627122	29627122	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM190A	401145	broad.mit.edu	37	4	91858281	91858281	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A1	407738	broad.mit.edu	37	3	68481336	68481336	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62225642	62225642	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM38B	63895	broad.mit.edu	37	18	10857273	10857273	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47B	170062	broad.mit.edu	37	X	34961804	34961804	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM53B	9679	broad.mit.edu	37	10	126393875	126393876	+	Intron	INS	-	GAAGGC	GAAGGC	rs146131325	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55A	120400	broad.mit.edu	37	11	114425109	114425109	+	Intron	SNP	G	A	A	rs145714112	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177245133	177245133	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM78B	149297	broad.mit.edu	37	1	166039446	166039446	+	3'UTR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM78B	149297	broad.mit.edu	37	1	166066795	166066798	+	Intron	DEL	ACCA	-	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCL	55120	broad.mit.edu	37	2	58387257	58387257	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARS2	10667	broad.mit.edu	37	6	5535077	5535077	+	Intron	SNP	T	C	C	rs144943953	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92159621	92159621	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48914627	48914627	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL12	54850	broad.mit.edu	37	19	9931160	9931160	+	5'Flank	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15894404	15894404	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2C	9103	broad.mit.edu	37	1	161561512	161561512	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEM1C	56929	broad.mit.edu	37	5	114879228	114879228	+	5'UTR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD6	55785	broad.mit.edu	37	12	95479779	95479779	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF12	2257	broad.mit.edu	37	3	192325107	192325107	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR4	2264	broad.mit.edu	37	5	176518580	176518580	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152287978	152287978	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ22536	401237	broad.mit.edu	37	6	21720996	21720996	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ22536	401237	broad.mit.edu	37	6	22132148	22132148	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ33360	401172	broad.mit.edu	37	5	6311837	6311837	+	3'UTR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84609298	84609298	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240384084	240384084	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMR1	2332	broad.mit.edu	37	X	147010237	147010237	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC3B	64778	broad.mit.edu	37	3	172050677	172050677	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXG1	2290	broad.mit.edu	37	14	29237817	29237817	+	Silent	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79207526	79207526	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14859371	14859371	+	Silent	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1	2483	broad.mit.edu	37	4	190875128	190875128	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12708488	12708488	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49350209	49350209	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL5	56884	broad.mit.edu	37	4	162513653	162513653	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT9	10690	broad.mit.edu	37	6	96522189	96522189	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
G3BP1	10146	broad.mit.edu	37	5	151166101	151166101	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47033839	47033839	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB2	2561	broad.mit.edu	37	5	160974618	160974618	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27568918	27568918	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27617966	27617966	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAGE12J	729396	broad.mit.edu	37	X	49201171	49201171	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAGE12J	729396	broad.mit.edu	37	X	49239303	49239303	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALC	2581	broad.mit.edu	37	14	88399585	88399585	+	3'UTR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT1	2589	broad.mit.edu	37	18	33187431	33187431	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT8	26290	broad.mit.edu	37	12	4835378	4835378	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	172828873	172828873	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA1	2623	broad.mit.edu	37	X	48650256	48650256	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42476463	42476463	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIGYF2	26058	broad.mit.edu	37	2	233658629	233658629	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIGYF2	26058	broad.mit.edu	37	2	233695412	233695412	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP5	55340	broad.mit.edu	37	7	150439289	150439289	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLB1L2	89944	broad.mit.edu	37	11	134239454	134239454	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLCE	26035	broad.mit.edu	37	15	69466741	69466741	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI2	2736	broad.mit.edu	37	2	121746948	121746948	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42224164	42224164	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIS1	148979	broad.mit.edu	37	1	54129267	54129267	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GM2A	2760	broad.mit.edu	37	5	151023494	151023494	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA4	2803	broad.mit.edu	37	3	37341680	37341680	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA4	2803	broad.mit.edu	37	3	37365369	37365369	+	Silent	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPD2	2820	broad.mit.edu	37	2	157448565	157448565	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPHN	10243	broad.mit.edu	37	14	67644150	67644150	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR123	84435	broad.mit.edu	37	10	134896057	134896057	+	Silent	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR182	11318	broad.mit.edu	37	12	57390347	57390347	+	3'UTR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR63	81491	broad.mit.edu	37	6	97267386	97267386	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR89B	51463	broad.mit.edu	37	1	147410750	147410750	+	Intron	SNP	C	A	A	rs147317355	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	90146041	90146041	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA1	2890	broad.mit.edu	37	5	152915860	152915860	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	93239729	93239729	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94506329	94506329	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	101994062	101994062	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120789914	120789914	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9915212	9915212	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK4	2868	broad.mit.edu	37	4	3030843	3030843	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM6	2916	broad.mit.edu	37	5	178418427	178418427	+	Silent	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126652244	126652244	+	Intron	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA4	2941	broad.mit.edu	37	6	52858451	52858451	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106635536	106635536	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSBP1	728411	broad.mit.edu	37	5	21367225	21367225	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPA	2993	broad.mit.edu	37	4	144995010	144995010	+	Intron	SNP	G	A	A	rs113195453	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HADH	3033	broad.mit.edu	37	4	108953460	108953460	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAO1	54363	broad.mit.edu	37	20	7876484	7876484	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBP1	26959	broad.mit.edu	37	7	106826354	106826354	+	Silent	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18705897	18705897	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC3	8916	broad.mit.edu	37	4	89600007	89600007	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEY2	23493	broad.mit.edu	37	6	126075725	126075725	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHLA2	11148	broad.mit.edu	37	3	108077387	108077387	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIGD1A	25994	broad.mit.edu	37	3	42841673	42841673	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2BM	8342	broad.mit.edu	37	6	27782028	27782028	+	5'Flank	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3G	8355	broad.mit.edu	37	6	26271336	26271336	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST2H2BF	440689	broad.mit.edu	37	1	149783681	149783681	+	Silent	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK2	3099	broad.mit.edu	37	2	75110618	75110618	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DQB1	3119	broad.mit.edu	37	6	32632627	32632627	+	Silent	SNP	C	T	T	rs1130389		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLX	3142	broad.mit.edu	37	1	221057861	221057861	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185897592	185897592	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCLL1	54511	broad.mit.edu	37	6	55348913	55348913	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HP1BP3	50809	broad.mit.edu	37	1	21073736	21073736	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPGD	3248	broad.mit.edu	37	4	175437051	175437051	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152192046	152192046	+	Missense_Mutation	SNP	T	G	G	rs149618092		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	25931794	25931794	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS6ST3	266722	broad.mit.edu	37	13	97361978	97361978	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSFX2	100130086	broad.mit.edu	37	X	148831830	148831830	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR2C	3358	broad.mit.edu	37	X	113887261	113887261	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	71054178	71054178	+	Missense_Mutation	SNP	T	C	C	rs6416709		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IARS2	55699	broad.mit.edu	37	1	220317348	220317348	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDH3A	3419	broad.mit.edu	37	15	78457721	78457721	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDH3A	3419	broad.mit.edu	37	15	78457723	78457723	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFIH1	64135	broad.mit.edu	37	2	163174589	163174589	+	Missense_Mutation	SNP	G	C	C	rs147278787	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF3	3321	broad.mit.edu	37	1	117137539	117137540	+	Intron	INS	-	G	G	rs143026687		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBKB	3551	broad.mit.edu	37	8	42174363	42174363	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	103824963	103824963	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL9	3578	broad.mit.edu	37	5	135229175	135229175	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMMP2L	83943	broad.mit.edu	37	7	110466855	110466855	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS8	55656	broad.mit.edu	37	8	95856798	95856798	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPCEF1	26034	broad.mit.edu	37	6	154579503	154579503	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPMK	253430	broad.mit.edu	37	10	59984912	59984912	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCA1	79781	broad.mit.edu	37	2	237249380	237249380	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCF1	132141	broad.mit.edu	37	3	51885678	51885678	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRF2	3660	broad.mit.edu	37	4	185320347	185320347	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31435742	31435742	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGBL1	9358	broad.mit.edu	37	13	102351609	102351609	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITM2C	81618	broad.mit.edu	37	2	231740344	231740344	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP1	152789	broad.mit.edu	37	4	6066770	6066770	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB2	9312	broad.mit.edu	37	8	73484734	73484734	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND2	3751	broad.mit.edu	37	7	120373017	120373017	+	Silent	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND3	3752	broad.mit.edu	37	1	112385055	112385055	+	Intron	SNP	G	T	T	rs139674325	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND3	3752	broad.mit.edu	37	1	112462231	112462231	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211002080	211002080	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211183218	211183218	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19329954	19329954	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19339730	19339730	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19415948	19415948	+	Intron	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19415971	19415971	+	Intron	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19574962	19574962	+	Silent	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP4	80333	broad.mit.edu	37	4	21937080	21937080	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88739935	88739935	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ3	3786	broad.mit.edu	37	8	133260299	133260299	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD8	386617	broad.mit.edu	37	4	44248586	44248586	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142641630	142641631	+	Intron	INS	-	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KGFLP2	654466	broad.mit.edu	37	9	41980591	41980591	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24139801	24139801	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1257	57501	broad.mit.edu	37	3	128680014	128680014	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1324L	222223	broad.mit.edu	37	7	86570977	86570977	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1328	57536	broad.mit.edu	37	18	34599117	34599117	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94158442	94158442	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1841	84542	broad.mit.edu	37	2	61361278	61361278	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF7	374654	broad.mit.edu	37	15	90188652	90188652	+	Silent	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL13	90293	broad.mit.edu	37	X	117098433	117098433	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL3	26249	broad.mit.edu	37	5	137065104	137065104	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL4	56062	broad.mit.edu	37	X	86887308	86887308	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL4	56062	broad.mit.edu	37	X	86887478	86887478	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLKB1	3818	broad.mit.edu	37	4	187167555	187167555	+	Intron	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLKP1	606293	broad.mit.edu	37	19	51394066	51394066	+	5'Flank	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KMO	8564	broad.mit.edu	37	1	241727322	241727322	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT86	3892	broad.mit.edu	37	12	52698625	52698625	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL3	84456	broad.mit.edu	37	6	130422825	130422825	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL	26013	broad.mit.edu	37	20	42157229	42157229	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129637259	129637259	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21461809	21461809	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107643342	107643342	+	5'UTR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB3	3914	broad.mit.edu	37	1	209798711	209798711	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBR	3930	broad.mit.edu	37	1	225613905	225613905	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB2	9079	broad.mit.edu	37	4	16674495	16674495	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLRAD3	143458	broad.mit.edu	37	11	36067001	36067001	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55144077	55144077	+	Missense_Mutation	SNP	C	A	A	rs61737881		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMCH1	22998	broad.mit.edu	37	4	41571179	41571179	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMS1	3987	broad.mit.edu	37	2	109224164	109224164	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	27963561	27963561	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO2	4005	broad.mit.edu	37	11	33911648	33911648	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100132288	100132288	broad.mit.edu	37	21	9908264	9908264	+	3'UTR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100133308	100133308	broad.mit.edu	37	10	45622108	45622108	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC116437	116437	broad.mit.edu	37	12	131674174	131674174	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC150568	150568	broad.mit.edu	37	2	105069187	105069187	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148244097	148244097	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285692	285692	broad.mit.edu	37	5	9703203	9703203	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285954	285954	broad.mit.edu	37	7	41783533	41783533	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647946	647946	broad.mit.edu	37	18	37318145	37318145	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91816027	91816027	+	Intron	SNP	G	T	T	rs1649483		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22659727	22659727	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22764377	22764377	+	RNA	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23072610	23072610	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160978349	160978349	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR5	163404	broad.mit.edu	37	1	99380258	99380258	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPP	4026	broad.mit.edu	37	3	188277253	188277253	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151370520	151370520	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH2	57631	broad.mit.edu	37	X	114447512	114447512	+	Intron	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH2	57631	broad.mit.edu	37	X	114447517	114447517	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIG2	9860	broad.mit.edu	37	1	113642778	113642778	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	142574324	142574324	+	Intron	SNP	G	C	C	rs114160597	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	142818599	142818599	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP6	4040	broad.mit.edu	37	12	12339962	12339962	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC49	54839	broad.mit.edu	37	15	71317807	71317807	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77397513	77397513	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77748748	77748748	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	115584676	115584676	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	115624917	115624917	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	115774404	115774404	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	24686042	24686042	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY86	9450	broad.mit.edu	37	6	6653697	6653697	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACROD2	140733	broad.mit.edu	37	20	14643149	14643149	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACROD2	140733	broad.mit.edu	37	20	14898304	14898304	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACROD2	140733	broad.mit.edu	37	20	15260132	15260132	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACROD2	140733	broad.mit.edu	37	20	15586125	15586125	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI1	9223	broad.mit.edu	37	3	65593111	65593111	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI1	9223	broad.mit.edu	37	3	65903228	65903228	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77651404	77651404	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1LC3C	440738	broad.mit.edu	37	1	242162047	242162048	+	Intron	INS	-	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2	4133	broad.mit.edu	37	2	210356700	210356700	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K4	9448	broad.mit.edu	37	2	102493427	102493427	+	Intron	DEL	C	-	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7D2	256714	broad.mit.edu	37	X	20034541	20034542	+	Intron	INS	-	AC	AC			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPKAP1	79109	broad.mit.edu	37	9	128391334	128391335	+	Intron	DEL	AC	-	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPKBP1	23005	broad.mit.edu	37	15	42099009	42099009	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	164481693	164481693	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	164490114	164490114	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST1	22983	broad.mit.edu	37	19	12978183	12978183	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD1	4152	broad.mit.edu	37	18	47803524	47803524	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM8	84515	broad.mit.edu	37	20	5967729	5967729	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	48065365	48065365	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	150910380	150910380	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13L	23389	broad.mit.edu	37	12	116617338	116617338	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126713885	126713885	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126738350	126738350	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS1	4211	broad.mit.edu	37	2	66709152	66709152	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS3	56917	broad.mit.edu	37	19	47910197	47910197	+	Silent	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL13	51603	broad.mit.edu	37	1	171758143	171758143	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD4	148808	broad.mit.edu	37	1	205548732	205548732	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGA	23269	broad.mit.edu	37	15	42052641	42052641	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGLL	11343	broad.mit.edu	37	3	127440706	127440709	+	Intron	DEL	TGTC	-	-	rs138910019		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18387316	18387316	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICB	4277	broad.mit.edu	37	6	31467635	31467635	+	Intron	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR645	693230	broad.mit.edu	37	20	49202224	49202224	+	5'Flank	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR708	100126333	broad.mit.edu	37	11	79113102	79113102	+	RNA	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLEC	9761	broad.mit.edu	37	12	121131964	121131964	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151954208	151954208	+	Intron	SNP	T	C	C	rs113276859		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151954278	151954278	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMEL1	79258	broad.mit.edu	37	1	2537095	2537095	+	Intron	SNP	G	A	A	rs78506337	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNAT1	4331	broad.mit.edu	37	14	61379374	61379374	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNDA	4332	broad.mit.edu	37	1	158809340	158809340	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOSPD2	158747	broad.mit.edu	37	X	14930347	14930347	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPZL1	9019	broad.mit.edu	37	1	167750378	167750379	+	Intron	DEL	AT	-	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL1	65008	broad.mit.edu	37	4	78783681	78783681	+	5'Flank	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1E	4493	broad.mit.edu	37	16	56659760	56659760	+	5'UTR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTBP	27085	broad.mit.edu	37	8	121471615	121471615	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR8	55613	broad.mit.edu	37	X	63545808	63545808	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR8	55613	broad.mit.edu	37	X	63584429	63584429	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11288885	11288885	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	29675567	29675567	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXD3	83463	broad.mit.edu	37	5	176740930	176740930	+	5'Flank	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10417174	10417174	+	Silent	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10542452	10542452	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23900920	23900920	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109475652	109475652	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO19	80179	broad.mit.edu	37	17	34871604	34871605	+	Intron	DNP	CC	AT	AT			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171374428	171374428	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171453214	171453214	+	Intron	SNP	C	T	T	rs116143516	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171476129	171476129	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5B	4645	broad.mit.edu	37	18	47468105	47468105	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM1	8736	broad.mit.edu	37	18	3158693	3158693	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYRIP	25924	broad.mit.edu	37	3	40033690	40033690	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	2128321	2128321	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA35	60560	broad.mit.edu	37	9	88608840	88608840	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101757044	101757044	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15550089	15550089	+	Intron	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16901504	16901504	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF3	84224	broad.mit.edu	37	1	21806353	21806353	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145122707	145122707	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145207595	145207595	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM1	4684	broad.mit.edu	37	11	112864035	112864035	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCK2	8440	broad.mit.edu	37	2	106464572	106464572	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133664353	133664353	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	134049056	134049056	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00189	193629	broad.mit.edu	37	21	30578698	30578698	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21450355	21450355	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEGR1	257194	broad.mit.edu	37	1	72176038	72176038	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEIL3	55247	broad.mit.edu	37	4	178269257	178269257	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21273130	21273130	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21297131	21297131	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NET1	10276	broad.mit.edu	37	10	5475343	5475343	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	22140447	22140447	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFIX	4784	broad.mit.edu	37	19	13126348	13126348	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHLRC2	374354	broad.mit.edu	37	10	115638021	115638021	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHSL2	340527	broad.mit.edu	37	X	71162834	71162834	+	Intron	SNP	G	C	C	rs112640366		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHS	4810	broad.mit.edu	37	X	17720801	17720801	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPAL2	79815	broad.mit.edu	37	8	99266175	99266175	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63890606	63890606	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5811257	5811257	+	Silent	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5811550	5811550	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP10	338322	broad.mit.edu	37	11	7983535	7983536	+	Intron	INS	-	A	A	rs144515578	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMNAT2	23057	broad.mit.edu	37	1	183300376	183300377	+	Intron	INS	-	C	C	rs142627846	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX5	79400	broad.mit.edu	37	15	69325682	69325682	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS3	64067	broad.mit.edu	37	14	34180749	34180749	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPVF	64111	broad.mit.edu	37	7	25270203	25270203	+	5'Flank	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG4	145957	broad.mit.edu	37	15	76291942	76291942	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	51128406	51128406	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	51129343	51129343	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79912241	79912241	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG1	22854	broad.mit.edu	37	1	107810787	107810787	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUBPL	80224	broad.mit.edu	37	14	32108177	32108177	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDCD2	134492	broad.mit.edu	37	5	162883926	162883926	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NYNRIN	57523	broad.mit.edu	37	14	24876171	24876171	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBP2A	29991	broad.mit.edu	37	9	138440414	138440414	+	Intron	SNP	C	T	T	rs114220148	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCLM	10896	broad.mit.edu	37	1	186369986	186369986	+	5'UTR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123805640	123805640	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123889999	123889999	+	Intron	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167045701	167045701	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167625260	167625260	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM3	118427	broad.mit.edu	37	1	102414782	102414782	+	Intron	SNP	T	C	C	rs112556690	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132307873	132307873	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132641388	132641388	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPRM1	4988	broad.mit.edu	37	6	154406799	154406799	+	Intron	DEL	G	-	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10AG1	282770	broad.mit.edu	37	11	55735807	55735807	+	Missense_Mutation	SNP	C	A	A	rs139897319	byFrequency	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1S1	219959	broad.mit.edu	37	11	57983165	57983165	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1S2	219958	broad.mit.edu	37	11	57970918	57970919	+	Nonsense_Mutation	DNP	CC	AT	AT			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A12	346525	broad.mit.edu	37	7	143792758	143792758	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AK2	391191	broad.mit.edu	37	1	248129382	248129382	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248185449	248185449	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L3	391192	broad.mit.edu	37	1	248224035	248224035	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W3	343171	broad.mit.edu	37	1	248059181	248059181	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D10	390197	broad.mit.edu	37	11	59245666	59245666	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D5	219875	broad.mit.edu	37	11	123810832	123810832	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22364138	22364138	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51L1	119682	broad.mit.edu	37	11	5020850	5020850	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52E4	390081	broad.mit.edu	37	11	5906390	5906391	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6F1	343169	broad.mit.edu	37	1	247875704	247875704	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H2	390151	broad.mit.edu	37	11	55872499	55872500	+	5'Flank	DNP	GC	TT	TT			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACRG	135138	broad.mit.edu	37	6	163213821	163213821	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAFAH1B2	5049	broad.mit.edu	37	11	117038616	117038616	+	3'UTR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALLD	23022	broad.mit.edu	37	4	169438231	169438231	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176434251	176434251	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176490967	176490967	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176638024	176638024	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	119086489	119086489	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAQR8	85315	broad.mit.edu	37	6	52263706	52263706	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3B	117583	broad.mit.edu	37	2	206467323	206467323	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP8	79668	broad.mit.edu	37	5	49982019	49982019	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAXIP1	22976	broad.mit.edu	37	7	154791282	154791282	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56287656	56287656	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	57165962	57165962	+	Intron	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67718020	67718020	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA11	56138	broad.mit.edu	37	5	140249780	140249780	+	Silent	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD6	10016	broad.mit.edu	37	5	290475	290475	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165754527	165754527	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178577212	178577212	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178859750	178859750	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE2A	5138	broad.mit.edu	37	11	72359231	72359231	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3B	5140	broad.mit.edu	37	11	14793570	14793570	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144915663	144915663	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4D	5144	broad.mit.edu	37	5	58596657	58596657	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4D	5144	broad.mit.edu	37	5	58987088	58987088	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE7A	5150	broad.mit.edu	37	8	66696463	66696463	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE8B	8622	broad.mit.edu	37	5	76707611	76707611	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41793626	41793626	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PER3	8863	broad.mit.edu	37	1	7898122	7898123	+	Intron	INS	-	GT	GT	rs146980483	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKM	5213	broad.mit.edu	37	12	48531094	48531094	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD1	84547	broad.mit.edu	37	6	28265639	28265639	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGCP	10404	broad.mit.edu	37	8	97721537	97721537	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGCP	10404	broad.mit.edu	37	8	98073916	98073916	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGR	5241	broad.mit.edu	37	11	100979859	100979859	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR1	221692	broad.mit.edu	37	6	13045379	13045379	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR3	116154	broad.mit.edu	37	20	58261807	58261807	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHEX	5251	broad.mit.edu	37	X	22155801	22155801	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKA1	5255	broad.mit.edu	37	X	71925130	71925130	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKB	5257	broad.mit.edu	37	16	47715199	47715199	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLPP1	23239	broad.mit.edu	37	18	60645538	60645538	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PID1	55022	broad.mit.edu	37	2	230047217	230047217	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGN	23556	broad.mit.edu	37	18	59714605	59714605	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGR	5284	broad.mit.edu	37	1	207110868	207110868	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2B	5287	broad.mit.edu	37	1	204394943	204394943	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18621532	18621532	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1B	8395	broad.mit.edu	37	9	71493765	71493765	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIR	8544	broad.mit.edu	37	X	15456853	15456853	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51555128	51555128	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G2E	30814	broad.mit.edu	37	1	20252338	20252338	+	5'Flank	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4A	5321	broad.mit.edu	37	1	186933391	186933391	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4E	123745	broad.mit.edu	37	15	42300619	42300619	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4E	123745	broad.mit.edu	37	15	42302338	42302338	+	Frame_Shift_Del	DEL	A	-	-	rs28736629		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242425755	242425755	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA5	54477	broad.mit.edu	37	12	19318836	19318836	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	132093204	132093204	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLRG1	5356	broad.mit.edu	37	4	155467586	155467586	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNC1	10154	broad.mit.edu	37	12	94563370	94563370	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2L4	5382	broad.mit.edu	37	7	66744653	66744653	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84534535	84534535	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84560745	84560745	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24781395	24781395	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA2	23649	broad.mit.edu	37	11	65036032	65036032	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POT1	25913	broad.mit.edu	37	7	124511045	124511045	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEF	728378	broad.mit.edu	37	2	130832621	130832621	+	Silent	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU6F2	11281	broad.mit.edu	37	7	39420324	39420324	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1B	133522	broad.mit.edu	37	5	149212595	149212595	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA3	8541	broad.mit.edu	37	19	49637507	49637507	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1K	152926	broad.mit.edu	37	4	89189558	89189558	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1L	151742	broad.mit.edu	37	3	160602070	160602070	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12B	4660	broad.mit.edu	37	1	202541852	202541852	+	Intron	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R9A	55607	broad.mit.edu	37	7	94805470	94805470	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R1A	5518	broad.mit.edu	37	19	52723581	52723581	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPTC7	160760	broad.mit.edu	37	12	110995680	110995680	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM11	56981	broad.mit.edu	37	11	45193091	45193091	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM14	63978	broad.mit.edu	37	8	70978723	70978723	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47292842	47292842	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69016105	69016105	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69136603	69136603	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57378096	57378096	+	Intron	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57420035	57420035	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT8	56341	broad.mit.edu	37	12	3662920	3662920	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROM1	8842	broad.mit.edu	37	4	16027302	16027302	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE2	158471	broad.mit.edu	37	9	79508829	79508829	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43528319	43528319	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43532011	43532011	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43258352	43258352	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSME1	5720	broad.mit.edu	37	14	24608169	24608169	+	3'UTR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11591085	11591085	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTEN	5728	broad.mit.edu	37	10	89711906	89711906	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	9030872	9030872	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	9111979	9111979	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRG	5793	broad.mit.edu	37	3	61601133	61601133	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71252816	71252816	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41050220	41050220	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29598339	29598339	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QRICH2	84074	broad.mit.edu	37	17	74276688	74276688	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3B	5865	broad.mit.edu	37	1	52431995	52431995	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3C	115827	broad.mit.edu	37	5	57905339	57905339	+	Intron	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB9B	51209	broad.mit.edu	37	X	103084149	103084149	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1L	9910	broad.mit.edu	37	1	174200395	174200395	+	Silent	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALYL	138046	broad.mit.edu	37	8	85280766	85280766	+	Intron	DEL	G	-	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARRES3	5920	broad.mit.edu	37	11	63306060	63306060	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL3	64926	broad.mit.edu	37	19	15572099	15572099	+	Silent	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF1	5923	broad.mit.edu	37	15	79343871	79343871	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM33	155435	broad.mit.edu	37	7	155458216	155458216	+	Intron	SNP	T	C	C	rs149331162	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBMS1	5937	broad.mit.edu	37	2	161172395	161172395	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCAN2	10231	broad.mit.edu	37	6	46263803	46263804	+	Intron	INS	-	GT	GT	rs60947209		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCSD1	92241	broad.mit.edu	37	1	167666482	167666482	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1P	5969	broad.mit.edu	37	2	79364168	79364168	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103418071	103418071	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REXO1L1	254958	broad.mit.edu	37	8	86573427	86573427	+	3'UTR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC1	5981	broad.mit.edu	37	4	39311570	39311570	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC2	5982	broad.mit.edu	37	7	73266543	73266543	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFWD2	64326	broad.mit.edu	37	1	176075462	176075462	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72913659	72913659	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOJ	57381	broad.mit.edu	37	14	63703077	63703077	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOJ	57381	broad.mit.edu	37	14	63708843	63708843	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOXF1	158800	broad.mit.edu	37	X	119249292	119249292	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RICTOR	253260	broad.mit.edu	37	5	38967494	38967494	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RICTOR	253260	broad.mit.edu	37	5	38978759	38978759	+	Intron	DEL	A	-	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87566280	87566280	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEN	29102	broad.mit.edu	37	5	31431632	31431632	+	Intron	SNP	G	C	C	rs57320855		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	78725312	78725312	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROCK2	9475	broad.mit.edu	37	2	11375869	11375869	+	Silent	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROCK2	9475	broad.mit.edu	37	2	11458425	11458425	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR2	4920	broad.mit.edu	37	9	94544782	94544782	+	Intron	SNP	T	G	G	rs74483489	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPH3AL	9501	broad.mit.edu	37	17	200987	200987	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL10	6134	broad.mit.edu	37	X	153628150	153628150	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KC1	26750	broad.mit.edu	37	1	213314603	213314603	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPTOR	57521	broad.mit.edu	37	17	78539373	78539373	+	Intron	SNP	C	T	T	rs111466042		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRAS2	22800	broad.mit.edu	37	11	14322777	14322777	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSRC1	51319	broad.mit.edu	37	3	157862452	157862452	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN4RL1	146760	broad.mit.edu	37	17	1923360	1923360	+	Intron	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYBP	23429	broad.mit.edu	37	3	72424604	72424604	+	3'UTR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33873391	33873391	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33878260	33878260	+	Silent	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A5	6276	broad.mit.edu	37	1	153512506	153512506	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAFB	6294	broad.mit.edu	37	19	5667041	5667041	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCARA3	51435	broad.mit.edu	37	8	27507174	27507174	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCHIP1	29970	broad.mit.edu	37	3	159167096	159167096	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	166061776	166061776	+	5'Flank	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRG1	11341	broad.mit.edu	37	4	174325126	174325126	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169582862	169582862	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9080651	9080652	+	Intron	INS	-	A	A	rs79051988		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB10	5273	broad.mit.edu	37	18	61600405	61600405	+	Silent	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD3	84193	broad.mit.edu	37	14	99880133	99880133	+	Intron	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7366638	7366638	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	155383808	155383809	+	Intron	DEL	CC	-	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	155459513	155459513	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	156167261	156167261	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	14661143	14661143	+	Intron	SNP	T	C	C	rs113544407		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	14719205	14719205	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	14725739	14725739	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	14909414	14909414	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67101257	67101257	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGPP2	130367	broad.mit.edu	37	2	223369154	223369154	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3PXD2B	285590	broad.mit.edu	37	5	171765474	171765474	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK2	22941	broad.mit.edu	37	11	70336362	70336362	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHF	90525	broad.mit.edu	37	15	45464514	45464514	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A6	345274	broad.mit.edu	37	4	87746489	87746489	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A3	10786	broad.mit.edu	37	6	25847043	25847043	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A2	6571	broad.mit.edu	37	10	119016493	119016493	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A23	63027	broad.mit.edu	37	6	3432473	3432473	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A13	10165	broad.mit.edu	37	7	95894781	95894781	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92314871	92314871	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A8	116369	broad.mit.edu	37	6	35944890	35944890	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A8	64116	broad.mit.edu	37	4	103198160	103198160	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A1	23446	broad.mit.edu	37	9	108169174	108169174	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	76069438	76069439	+	Intron	INS	-	TT	TT	rs57844833		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A2	51151	broad.mit.edu	37	5	33984667	33984667	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A19	340024	broad.mit.edu	37	5	1222065	1222065	+	3'UTR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A4	6532	broad.mit.edu	37	17	28537490	28537490	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A7	84679	broad.mit.edu	37	X	46506027	46506027	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	142995427	142995427	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143200487	143200487	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143452139	143452139	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAP1	60682	broad.mit.edu	37	6	71436602	71436602	+	Intron	SNP	G	T	T	rs71788683		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC1B	27127	broad.mit.edu	37	22	45758654	45758654	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPD2	6610	broad.mit.edu	37	6	109763106	109763106	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD3	64754	broad.mit.edu	37	1	246219640	246219640	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNCA	6622	broad.mit.edu	37	4	90743802	90743802	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25334177	25334177	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25154061	25154061	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	50892481	50892481	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1354334	1354334	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNW1	22938	broad.mit.edu	37	14	78221206	78221206	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX9	51429	broad.mit.edu	37	6	158347907	158347907	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX11	6664	broad.mit.edu	37	2	5836624	5836625	+	3'UTR	DNP	CG	TT	TT			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP110	3431	broad.mit.edu	37	2	231067109	231067109	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118660472	118660472	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG6	9576	broad.mit.edu	37	10	22675916	22675916	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINK8	646424	broad.mit.edu	37	3	48361353	48361353	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK3	50859	broad.mit.edu	37	4	167878073	167878073	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK3	50859	broad.mit.edu	37	4	167944923	167944923	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRBD1	55133	broad.mit.edu	37	2	45691492	45691492	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP1	57522	broad.mit.edu	37	12	64539861	64539861	+	3'UTR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSH2	85464	broad.mit.edu	37	17	27998795	27998795	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX6	280657	broad.mit.edu	37	X	47964760	47964760	+	5'Flank	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX8	280659	broad.mit.edu	37	X	52661635	52661635	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL3	6487	broad.mit.edu	37	1	44232980	44232980	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST5	6764	broad.mit.edu	37	11	8861441	8861441	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC5	81849	broad.mit.edu	37	1	77452269	77452269	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG3L4	64940	broad.mit.edu	37	7	66774772	66774772	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD13	90627	broad.mit.edu	37	13	33897252	33897252	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAU2	27067	broad.mit.edu	37	8	74531656	74531656	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STEAP4	79689	broad.mit.edu	37	7	87930199	87930199	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIM1	6786	broad.mit.edu	37	11	4068552	4068552	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIM1	6786	broad.mit.edu	37	11	4081770	4081770	+	Intron	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32B	55351	broad.mit.edu	37	4	5417494	5417494	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX3	6809	broad.mit.edu	37	11	59553428	59553428	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUCLG2	8801	broad.mit.edu	37	3	67443687	67443687	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF2	55959	broad.mit.edu	37	20	46360235	46360235	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1C2	6819	broad.mit.edu	37	2	108914244	108914244	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMF1	285362	broad.mit.edu	37	3	4246807	4246807	+	Intron	SNP	A	G	G	rs143729014	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT3H	8464	broad.mit.edu	37	6	45251529	45251529	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT6H	6830	broad.mit.edu	37	17	27000402	27000402	+	5'UTR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD4	55061	broad.mit.edu	37	1	223490122	223490122	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152887762	152887762	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64518664	64518664	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACR1	6869	broad.mit.edu	37	2	75313643	75313643	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF10	6881	broad.mit.edu	37	11	6632286	6632286	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF3	83860	broad.mit.edu	37	10	7988406	7988406	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS1R1	80835	broad.mit.edu	37	1	6638981	6638982	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D22A	25771	broad.mit.edu	37	22	47466058	47466058	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBXAS1	6916	broad.mit.edu	37	7	139565518	139565518	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF7L2	6934	broad.mit.edu	37	10	114894246	114894246	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TET1	80312	broad.mit.edu	37	10	70446350	70446350	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX11	56159	broad.mit.edu	37	X	70058636	70058636	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFDP1	7027	broad.mit.edu	37	13	114268358	114268358	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	134029752	134029752	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEMIS	387357	broad.mit.edu	37	6	128129113	128129113	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138357495	138357495	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63004466	63004466	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63106234	63106234	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM9SF3	56889	broad.mit.edu	37	10	98311207	98311207	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC1	117531	broad.mit.edu	37	9	75279748	75279748	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEFF1	8577	broad.mit.edu	37	9	103274779	103274779	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM108	66000	broad.mit.edu	37	3	132961136	132961136	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM117	84216	broad.mit.edu	37	12	44661616	44661616	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM143	55260	broad.mit.edu	37	19	48842295	48842295	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM181	57583	broad.mit.edu	37	6	158988729	158988729	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15270342	15270342	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM49	81671	broad.mit.edu	37	17	57917037	57917038	+	Intron	INS	-	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63B	55362	broad.mit.edu	37	6	44116412	44116412	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM9	252839	broad.mit.edu	37	1	201120816	201120816	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMLHE	55217	broad.mit.edu	37	X	154806625	154806625	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMSB10	9168	broad.mit.edu	37	2	85133174	85133174	+	Silent	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74898583	74898583	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175393054	175393054	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	31978876	31978876	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOM1	10043	broad.mit.edu	37	22	35719897	35719897	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX	9760	broad.mit.edu	37	8	59811232	59811232	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX	9760	broad.mit.edu	37	8	59944690	59944690	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113659662	113659662	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH1	7166	broad.mit.edu	37	11	18042606	18042606	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1380297	1380297	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10937633	10937633	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3IP1	26146	broad.mit.edu	37	2	239234519	239234519	+	Silent	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRERF1	55809	broad.mit.edu	37	6	42365391	42365391	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM45	80263	broad.mit.edu	37	1	117664367	117664367	+	5'UTR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248039301	248039301	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP11	9321	broad.mit.edu	37	14	92470887	92470887	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31363186	31363186	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73915848	73915848	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116599202	116599202	+	Intron	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV3	162514	broad.mit.edu	37	17	3446988	3446988	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142622848	142622848	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA10	80705	broad.mit.edu	37	2	99622284	99622284	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31770628	31770628	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN7	7102	broad.mit.edu	37	X	38515467	38515467	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN9	10867	broad.mit.edu	37	12	3336574	3336574	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC24	164118	broad.mit.edu	37	1	156554994	156554994	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC27	55622	broad.mit.edu	37	2	33036964	33036964	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC28	23331	broad.mit.edu	37	22	28604204	28604204	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL4	9654	broad.mit.edu	37	2	219600550	219600550	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTYH2	94015	broad.mit.edu	37	17	72256305	72256305	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP6	85378	broad.mit.edu	37	22	50660228	50660228	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUB	7275	broad.mit.edu	37	11	8066125	8066125	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA2	10054	broad.mit.edu	37	19	34925867	34925867	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAC2	337867	broad.mit.edu	37	13	99948489	99948489	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBASH3A	53347	broad.mit.edu	37	21	43858263	43858263	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	156956491	156956494	+	Intron	DEL	TGTT	-	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A2	167127	broad.mit.edu	37	5	36069019	36069022	+	5'Flank	DEL	AGGG	-	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK4	54986	broad.mit.edu	37	3	41319450	41319450	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC93A	54346	broad.mit.edu	37	6	167705029	167705029	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126217049	126217049	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215925409	215925409	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216400367	216400367	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216556552	216556552	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP6NL	9712	broad.mit.edu	37	10	11588726	11588726	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144953945	144953945	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107792978	107792978	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	108329411	108329411	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	109863978	109863978	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	115199755	115199755	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	115745759	115745759	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	116787932	116787932	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	127060287	127060287	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	128381485	128381485	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	132372792	132372792	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	132488793	132488793	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	133552432	133552432	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	16180555	16180555	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	23799083	23799083	+	IGR	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	26203121	26203121	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	2722752	2722752	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30133272	30133272	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30262867	30262867	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	33816985	33816985	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	33905136	33905136	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37532880	37532880	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37897921	37897921	+	IGR	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38567255	38567255	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38616141	38616141	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42649187	42649187	+	IGR	SNP	A	T	T	rs149496692	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42660133	42660133	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42683817	42683817	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42754649	42754649	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	43265738	43265738	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	50414778	50414778	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	57454628	57454628	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	57827580	57827580	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	81287624	81287624	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8263011	8263011	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	85298455	85298455	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	86491847	86491847	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	99874637	99874637	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	106252572	106252572	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	106391559	106391559	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	112313008	112313008	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	113527384	113527384	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	123148591	123148591	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	123176836	123176836	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	128228900	128228900	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	128290441	128290441	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	130439700	130439700	+	IGR	SNP	G	A	A	rs113628330	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	130639520	130639520	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	131031854	131031854	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	134512321	134512321	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	13773600	13773600	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	27912241	27912241	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	29448823	29448823	+	IGR	SNP	C	T	T	rs113799934		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	29571668	29571668	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	29595926	29595926	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	29974182	29974182	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	36845301	36845301	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	36867946	36867946	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	37407963	37407963	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	38889341	38889341	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	39087254	39087254	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	41870377	41870377	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	41987170	41987170	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	43022987	43022987	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48548334	48548334	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49009140	49009140	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51554184	51554184	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51585542	51585542	+	IGR	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55185446	55185446	+	IGR	SNP	G	T	T	rs142665369	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55347607	55347607	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55523121	55523121	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55554848	55554848	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55845471	55845471	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56725888	56725888	+	IGR	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6265940	6265940	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	69213499	69213499	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71290834	71290834	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71440325	71440325	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	81083892	81083892	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	81276376	81276376	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	82232842	82232842	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	87641120	87641120	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90836586	90836586	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	92876012	92876012	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	95428013	95428013	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	97119911	97119911	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	10178128	10178128	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	103954481	103954481	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	106094278	106094278	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	108675813	108675813	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	113991843	113991843	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	116012169	116012169	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	116280526	116280526	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	119132670	119132670	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	126175107	126175107	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	130859255	130859255	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	19851043	19851043	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	22998310	22998310	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	30162817	30162817	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31022852	31022852	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34471592	34471592	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	40811486	40811486	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	42301741	42301742	+	IGR	DNP	CC	AA	AA			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	45470621	45470621	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	47962329	47962329	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	58712588	58712588	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	59253005	59253005	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	63887828	63887828	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	67590718	67590718	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	67798901	67798901	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	68734034	68734034	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	71433612	71433612	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	73465420	73465420	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80497203	80497203	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80611347	80611347	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	81351605	81351605	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	82525226	82525226	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	82585670	82585670	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	83704668	83704668	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	87397011	87397011	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	87566144	87566144	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	87622870	87622870	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	87720431	87720431	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	90370694	90370694	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	90421806	90421807	+	IGR	DNP	GG	TT	TT	rs147481480	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	94538425	94538425	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	98593315	98593315	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	101421420	101421420	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	103977025	103977025	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	104002039	104002039	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	104799153	104799153	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	104807279	104807279	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	105044328	105044329	+	IGR	DNP	GG	CA	CA			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	107769926	107769926	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	107807423	107807423	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	110194996	110194996	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	110499123	110499124	+	IGR	INS	-	A	A	rs34338249		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	23253514	23253514	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	30461360	30461360	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	31448535	31448535	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	31617511	31617511	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	35238530	35238530	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	35369127	35369127	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	35414383	35414383	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	39713280	39713280	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	40809438	40809438	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	42052163	42052163	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	43451034	43451034	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	44747940	44747940	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	51791312	51791313	+	IGR	INS	-	T	T	rs145766865	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	53821244	53821244	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	53982971	53982971	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	54409039	54409039	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	54909532	54909532	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	56041847	56041847	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	56615976	56615976	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	56725897	56725897	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	57414717	57414717	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	57692306	57692306	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	57803697	57803697	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	58353100	58353100	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	58944837	58944837	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	59673347	59673347	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	60123815	60123815	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	60825264	60825264	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	60825283	60825283	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	63559552	63559552	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	64863259	64863259	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	66327311	66327312	+	IGR	DNP	GG	TT	TT			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	71248038	71248038	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	71387271	71387271	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	72526754	72526754	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	72883446	72883446	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	75575603	75575603	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	75671201	75671201	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	79279623	79279623	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	81185220	81185220	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	83048445	83048445	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	87091355	87091355	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90375969	90375969	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90644547	90644547	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	91692135	91692135	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	91825857	91825857	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	91836545	91836545	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	91924924	91924924	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	91977448	91977448	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	98470075	98470075	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	98533618	98533618	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19012915	19012915	+	IGR	SNP	G	T	T	rs147376746	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19012944	19012944	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19806406	19806406	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	21911837	21911837	+	IGR	SNP	C	A	A	rs140644537		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	25725727	25725727	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	26578134	26578134	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	26668944	26668944	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	27112544	27112544	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	28737703	28737703	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	29735428	29735428	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	30570516	30570516	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	40242149	40242149	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	40264377	40264377	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	41010294	41010294	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	42596622	42596622	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43562385	43562385	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	48572062	48572062	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	49827585	49827585	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	49939339	49939339	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	51567709	51567709	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	52851117	52851117	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	54267773	54267773	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	56549421	56549421	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	58157156	58157156	+	IGR	SNP	A	G	G	rs74833160	byFrequency;by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	76571839	76571839	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82200696	82200696	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	84259638	84259639	+	IGR	DNP	CC	AA	AA			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	86209164	86209164	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	87740899	87740899	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	87775827	87775827	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	88478426	88478426	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	89452942	89452942	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98488942	98488942	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	99223671	99223671	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	99367537	99367537	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102441435	102441435	+	IGR	SNP	A	G	G	rs148349411	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102453440	102453440	+	IGR	SNP	C	T	T	rs142677693	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20108303	20108303	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20134213	20134213	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21904004	21904004	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22439819	22439819	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22439831	22439831	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22504163	22504163	+	IGR	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	23470356	23470356	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	24488528	24488528	+	IGR	SNP	T	C	C	rs137958297	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	30298587	30298587	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	30316896	30316896	+	IGR	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	37446073	37446073	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	37679795	37679795	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	37683987	37683987	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	37693027	37693027	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	39643249	39643249	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	46255878	46255878	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	46584319	46584319	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	47124861	47124861	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	48244755	48244755	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	49996488	49996488	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	49996519	49996519	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	52369650	52369650	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	53264103	53264103	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	53433850	53433850	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	56539723	56539723	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	61575179	61575179	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	62900775	62900775	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	73149732	73149732	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	74188541	74188541	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	77797730	77797730	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	87809015	87809015	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	87897099	87897100	+	IGR	DNP	GG	TT	TT			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	88909216	88909216	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	88920115	88920115	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	91847476	91847476	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	91899791	91899791	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	92364321	92364321	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	92840930	92840930	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	95399599	95399599	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	95765634	95765634	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	96326005	96326005	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	97876123	97876123	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	98156756	98156756	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	13453553	13453553	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	20128850	20128850	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	20625903	20625903	+	IGR	SNP	A	C	C	rs150347445	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	22992044	22992044	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	27024789	27024789	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	31674070	31674070	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32108525	32108525	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32117501	32117501	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32139528	32139528	+	IGR	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32840549	32840549	+	IGR	SNP	T	A	A	rs76766024		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33585481	33585481	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34515741	34515742	+	IGR	DNP	GG	TT	TT			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34524191	34524191	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34578646	34578646	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	46471883	46471883	+	IGR	SNP	G	C	C	rs149839158	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	46832162	46832162	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	48721617	48721617	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	48746079	48746079	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	49090331	49090331	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	50048665	50048666	+	IGR	INS	-	A	A	rs146570324		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	51161749	51161749	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	51826800	51826800	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	52673716	52673716	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	52948983	52948983	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	59875151	59875151	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60214881	60214881	+	IGR	SNP	T	C	C	rs61127820	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	62088431	62088431	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	62786193	62786193	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	63735399	63735399	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	63885768	63885768	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	64263760	64263760	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	73281816	73281816	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	74179973	74179973	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	76597877	76597877	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	79318723	79318723	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	8359733	8359733	+	IGR	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	86766016	86766016	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	87032848	87032848	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	9632169	9632169	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	9715061	9715061	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	12138828	12138828	+	IGR	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	14152067	14152067	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	16521086	16521086	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	16885379	16885379	+	IGR	DEL	C	-	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	38627870	38627870	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	50425425	50425425	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	50572267	50572267	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51101819	51101820	+	IGR	INS	-	A	A	rs148474050	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52646168	52646168	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52646170	52646170	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52722630	52722630	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	53862479	53862479	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	53980764	53980764	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	5656693	5656693	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	66679964	66679964	+	IGR	SNP	G	T	T	rs142962997	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	68801178	68801178	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	8560900	8560900	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	10139341	10139341	+	IGR	SNP	C	A	A	rs145549919	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	10705030	10705030	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	15201872	15201872	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	22420452	22420452	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26447020	26447020	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26740768	26740768	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	35305279	35305279	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	36462014	36462014	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	40953142	40953142	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	45239049	45239049	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	51072394	51072394	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	53532507	53532507	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	53747071	53747071	+	IGR	SNP	C	T	T	rs144380387	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	53882353	53882353	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	54981707	54981707	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	56320605	56320605	+	IGR	SNP	C	T	T	rs79138652		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57845157	57845157	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57865609	57865609	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	60367812	60367812	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	62352770	62352770	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	65298366	65298366	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	65959165	65959165	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	66287889	66287889	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	68097630	68097630	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	69775043	69775043	+	IGR	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	73462009	73462009	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	73772458	73772458	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	75225374	75225374	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15014995	15014995	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15578675	15578675	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	27881437	27881437	+	IGR	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	28856954	28856954	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29645640	29645640	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31373776	31373776	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31435744	31435745	+	IGR	DNP	GG	TT	TT			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31538123	31538123	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31547311	31547311	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31557816	31557817	+	IGR	DNP	GG	TT	TT			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	32105073	32105073	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	32585679	32585680	+	IGR	DNP	CC	AA	AA			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	35056326	35056326	+	IGR	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	36759720	36759720	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	40136623	40136623	+	IGR	SNP	G	T	T	rs76018418	byFrequency;by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	41331008	41331008	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	42296934	42296934	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43883096	43883096	+	IGR	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	51714083	51714083	+	IGR	SNP	C	A	A	rs145530975	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	57430417	57430417	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	9097101	9097101	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	101802127	101802127	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104383287	104383287	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104807425	104807425	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	105569948	105569948	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	105740243	105740243	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106811836	106811836	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106841847	106841847	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	107629801	107629801	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	108034941	108034941	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	112545674	112545674	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	114765696	114765697	+	IGR	INS	-	TGAA	TGAA	rs138325072	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	118918701	118918701	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121482263	121482263	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142544028	142544028	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143533565	143533565	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146476912	146476912	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146597064	146597064	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152683361	152683361	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158544541	158544541	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159638022	159638022	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	161427500	161427500	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	161943031	161943031	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	162982307	162982307	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163384654	163384654	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163411082	163411082	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	168640301	168640302	+	IGR	INS	-	TGTC	TGTC	rs148282142	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	168792054	168792054	+	IGR	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	168876973	168876973	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	170424570	170424572	+	IGR	DEL	GTA	-	-	rs113083829		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	17471323	17471323	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	177456687	177456687	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	177493475	177493475	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	177704468	177704469	+	IGR	INS	-	C	C	rs145590586	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	177893932	177893932	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	178027679	178027679	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	185427459	185427459	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	188047023	188047023	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	189726437	189726437	+	IGR	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	190522330	190522330	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	190592731	190592731	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191725678	191725678	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192811869	192811869	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	193664757	193664757	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	194637990	194637990	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	195253816	195253816	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	195354577	195354577	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	196584699	196584699	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	198363511	198363511	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	200266090	200266090	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	205448244	205448245	+	IGR	INS	-	TT	TT	rs142302821	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	20563901	20563901	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209592275	209592276	+	IGR	INS	-	GA	GA	rs150290446	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	213857793	213857793	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	214893602	214893602	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	218874744	218874744	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	219445634	219445634	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	222273104	222273104	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	222520845	222520845	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	224758184	224758184	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	227744632	227744632	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	232951431	232951431	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	233925813	233925813	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	234800936	234800936	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	238984504	238984504	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	242928727	242928730	+	IGR	DEL	AAAC	-	-	rs144384297		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247763634	247763634	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248854076	248854076	+	IGR	DEL	C	-	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	31043225	31043225	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	41755675	41755675	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	4264952	4264952	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	4446007	4446007	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	47968359	47968359	+	IGR	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	63457355	63457355	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	66909371	66909371	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	69941354	69941354	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	71096032	71096032	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	73618264	73618264	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	74272792	74272792	+	IGR	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	77166094	77166094	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79215001	79215001	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	83152933	83152933	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	88457011	88457011	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	90789389	90789389	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	92042799	92042799	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	92053071	92053071	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96219523	96219523	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	99276996	99276996	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	10980557	10980557	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	11626961	11626961	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	11955365	11955365	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	12396035	12396035	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	12790565	12790565	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	17191542	17191542	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	18884886	18884887	+	IGR	DNP	CC	GT	GT			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	19825248	19825248	+	IGR	SNP	T	C	C	rs149130490	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	23224452	23224452	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	23666210	23666210	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	26102653	26102653	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29588563	29588563	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	36041950	36041951	+	IGR	INS	-	CCGG	CCGG	rs148111786	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	41868894	41868894	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	47097129	47097129	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	51556834	51556834	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	5196083	5196083	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53906126	53906126	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	55314712	55314712	+	IGR	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	7859436	7859436	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10141581	10141581	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10646983	10646983	+	IGR	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10727303	10727303	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10862718	10862718	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11127189	11127189	+	IGR	SNP	T	C	C	rs142519109	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14604495	14604495	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	17355322	17355322	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	18755679	18755679	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	22295191	22295191	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	23342159	23342159	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24806307	24806307	+	IGR	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	29639396	29639396	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	32053656	32053656	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	35525563	35525563	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9412913	9412913	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9415284	9415284	+	IGR	SNP	A	T	T	rs75716547	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16865138	16865138	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16926290	16926290	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	25408486	25408486	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	26519727	26519727	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	27650713	27650713	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	32668711	32668711	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34783005	34783005	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	103830189	103830190	+	IGR	DNP	GG	TT	TT			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	104381804	104381804	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	104787751	104787751	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	114823557	114823557	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	114866707	114866707	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117115486	117115486	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117190427	117190427	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117709731	117709731	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117916020	117916020	+	IGR	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117975171	117975171	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	124387713	124387713	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	126441005	126441006	+	IGR	DNP	CA	AT	AT			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	129602624	129602624	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	129746684	129746684	+	IGR	SNP	C	G	G	rs146356136	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132683843	132683843	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132774275	132774275	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133020005	133020005	+	IGR	SNP	G	A	A	rs80278536	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133118473	133118473	+	IGR	SNP	A	C	C	rs146738713	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	13488641	13488641	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	136994095	136994095	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	140058576	140058576	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	146012067	146012067	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	146029909	146029909	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	14755353	14755353	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	147691440	147691440	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	154219713	154219713	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	157916822	157916822	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	159742334	159742334	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	159814262	159814262	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	16126201	16126201	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162372577	162372577	+	IGR	SNP	C	T	T	rs117484090	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168748472	168748472	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	169172369	169172369	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17121390	17121390	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	172495101	172495102	+	IGR	DNP	CC	GA	GA			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	177216731	177216731	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	177294398	177294398	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	177370389	177370389	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	180958761	180958761	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	182686082	182686082	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	182686089	182686089	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	184372534	184372534	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	184451024	184451024	+	IGR	SNP	G	A	A	rs150963012	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	185113009	185113009	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	185960097	185960097	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	187098156	187098156	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	189570888	189570888	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	190903059	190903059	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	192742096	192742096	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	195884320	195884320	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	205098122	205098122	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210096990	210096990	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	21835954	21835954	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	219818640	219818640	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	220954315	220954315	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	221183328	221183328	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	225971913	225971914	+	IGR	INS	-	TGTG	TGTG	rs146835059	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	226732930	226732930	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	227455395	227455395	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	232509059	232509059	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	237102330	237102330	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	2827152	2827152	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	29315080	29315080	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	30542519	30542519	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	308968	308968	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	31499533	31499535	+	IGR	DEL	ATC	-	-	rs149914094		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	31707287	31707287	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	31719397	31719397	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	33964962	33964962	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	34667628	34667628	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	34706931	34706931	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	34725552	34725552	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	40028380	40028380	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	42300278	42300278	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	4473507	4473507	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	46736065	46736065	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	4802008	4802008	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	49571174	49571174	+	IGR	SNP	C	A	A	rs117805528	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	5189094	5189094	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	52495844	52495844	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	57046927	57046927	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58105908	58105908	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	59960430	59960430	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	6026795	6026795	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	60311217	60311217	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	68510770	68510770	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	73166211	73166211	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	73979721	73979721	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	7606570	7606570	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	78194637	78194637	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81036275	81036275	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81684795	81684795	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	82260776	82260776	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	83845652	83845652	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91789170	91789170	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	9267361	9267361	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	100728393	100728393	+	IGR	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	10772303	10772303	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	107844502	107844502	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	109600861	109600861	+	IGR	SNP	G	A	A	rs77015997	byFrequency;by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	112896393	112896393	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116353401	116353401	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116963085	116963085	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	117042034	117042034	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	117550224	117550224	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	129873708	129873708	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	135440393	135440393	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	140436143	140436143	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	141393062	141393062	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	144958995	144958995	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	146741122	146741122	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	146760198	146760198	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	149930453	149930453	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	15187309	15187309	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	153231294	153231294	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	155186912	155186912	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	161769111	161769111	+	IGR	DEL	C	-	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	161902769	161902769	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	166273195	166273195	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	178231042	178231050	+	IGR	DEL	AGAACCCTG	-	-	rs113024975		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	179222634	179222634	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180809532	180809532	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180976421	180976421	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	191704329	191704329	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	192450087	192450087	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	24900925	24900925	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	26484017	26484017	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	30595648	30595648	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	31108835	31108835	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	34120067	34120067	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	35137409	35137409	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	36251607	36251607	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	55164904	55164904	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	59551596	59551596	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	64023087	64023087	+	IGR	SNP	G	A	A	rs115931245	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	64465546	64465546	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	65248789	65248789	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	67103088	67103088	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	67282876	67282876	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	74015860	74015860	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	74642489	74642489	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	74731631	74731631	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	76671424	76671424	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	76718777	76718777	+	IGR	SNP	T	C	C	rs149267722	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	80265968	80265968	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	81331411	81331411	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	82633066	82633066	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	83987649	83987649	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	86575666	86575666	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87391847	87391847	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88522551	88522551	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	89037780	89037780	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	89748332	89748332	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	98773700	98773700	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	10257153	10257153	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	104270162	104270162	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	105970865	105970865	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	109293902	109293902	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	11019553	11019553	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	111316739	111316739	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	111853071	111853071	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	115431775	115431776	+	IGR	DNP	GC	AA	AA			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	11582536	11582536	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116099912	116099912	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	117272499	117272499	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	118042147	118042147	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	11833825	11833825	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	118581525	118581525	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	12102688	12102688	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	123415782	123415782	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	124491621	124491621	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	12472074	12472074	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	127565034	127565034	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	128183546	128183546	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	131088168	131088168	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13145149	13145149	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13193943	13193943	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	134379662	134379663	+	IGR	DNP	CA	AG	AG			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135319999	135319999	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	137804372	137804372	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	138491415	138491415	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	145165799	145165799	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	145387050	145387050	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	147119816	147119816	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	149536963	149536963	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	15112215	15112215	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	154018211	154018212	+	IGR	INS	-	C	C	rs145539641	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	158747964	158747964	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	158875304	158875304	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	160381637	160381637	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	160493033	160493033	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	16121910	16121910	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	167064115	167064115	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	167518620	167518620	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	16904491	16904491	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	17156780	17156780	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	174048028	174048028	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	174694843	174694843	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	174731273	174731273	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	175541735	175541735	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	177130951	177130951	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	178326289	178326289	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	179163819	179163819	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	180540779	180540779	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	181418778	181418778	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	181794045	181794045	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	182263559	182263559	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	182703042	182703042	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	18602849	18602849	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	18840372	18840373	+	IGR	DNP	GG	TT	TT			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	188830811	188830811	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190396240	190396240	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	22149095	22149095	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	23059235	23059235	+	IGR	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	27865706	27865706	+	IGR	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28347201	28347201	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	30009628	30009628	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	30552218	30552218	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	31201106	31201106	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	31686977	31686977	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	33106449	33106449	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	34413595	34413595	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	34676545	34676545	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	37033189	37033189	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	42035	42035	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	43747976	43747976	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	43912487	43912487	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	44017603	44017603	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	45672777	45672777	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	46570915	46570915	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	4813002	4813002	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49108262	49108262	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49169991	49169991	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49317233	49317233	+	IGR	SNP	C	G	G	rs140932964	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	55261882	55261882	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	55794293	55794293	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	58141499	58141499	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	59874573	59874573	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	67885237	67885237	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69596161	69596161	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	73030241	73030241	+	IGR	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	73561632	73561632	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	78965095	78965095	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	84589812	84589812	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	88848950	88848950	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	95668969	95668969	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	98433566	98433566	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	100573227	100573227	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	100680881	100680881	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	10132340	10132340	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	103988391	103988391	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	105594990	105594990	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	106447126	106447126	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	111950434	111950434	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	116670424	116670424	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	117364424	117364424	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	119554895	119554895	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	120566809	120566809	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	121381671	121381671	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	12216225	12216225	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	122821736	122821736	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	123690714	123690714	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	124214732	124214732	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	124628287	124628287	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	126479384	126479384	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	128544145	128544145	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	129100684	129100684	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	130473403	130473403	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	135956197	135956197	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	136839506	136839506	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	144083518	144083518	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	15172094	15172094	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	152762277	152762277	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	1539992	1539992	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	158921463	158921463	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	16022236	16022236	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	161603595	161603596	+	IGR	DNP	GG	TT	TT			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	16397123	16397123	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	164605559	164605559	+	IGR	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	16640706	16640706	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	166473138	166473138	+	IGR	SNP	C	A	A	rs116517395	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	168988343	168988343	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	173545175	173545175	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	174775194	174775194	+	IGR	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	174782074	174782074	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	17611267	17611267	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	1960663	1960663	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20010293	20010293	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	2119152	2119152	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	2146886	2146886	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24749136	24749136	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25299447	25299447	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	26847914	26847915	+	IGR	INS	-	TG	TG	rs139105968	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	28500676	28500676	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	30087930	30087930	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	30355013	30355013	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	3219017	3219017	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	33122228	33122228	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	38015800	38015800	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	39502077	39502080	+	IGR	DEL	GTGT	-	-	rs148960907		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	39844110	39844110	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	44164249	44164249	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	4933881	4933881	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	52643935	52643935	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	57811403	57811403	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	5826514	5826514	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	61159747	61159747	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	6533596	6533597	+	IGR	INS	-	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	67892692	67892692	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7070793	7070793	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	72608473	72608473	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	73548153	73548153	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75319765	75319765	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	77634319	77634319	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7976927	7976927	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	81068833	81068833	+	IGR	DEL	T	-	-	rs72292703		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	8309574	8309574	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84881727	84881727	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	85610842	85610842	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	86242584	86242584	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	87209379	87209379	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	88569697	88569697	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	9025983	9025983	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	92486619	92486619	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	98923195	98923195	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	99245825	99245825	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	102614599	102614599	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	102879181	102879181	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	103388569	103388569	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	103469239	103469239	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	103653694	103653694	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104014448	104014448	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104310460	104310460	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	106024752	106024752	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	106902082	106902082	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	109107391	109107391	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	109304154	109304154	+	IGR	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112314224	112314224	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	114201924	114201924	+	IGR	DEL	T	-	-	rs71767865		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	115784851	115784851	+	IGR	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	116771483	116771483	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	119896784	119896784	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	125449255	125449255	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	126561304	126561304	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	131138376	131138376	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	135151856	135151856	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	137447838	137447838	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	140676629	140676629	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	142430976	142430976	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	144446057	144446057	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	154233445	154233445	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	159759369	159759369	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	161090885	161090885	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	171048860	171048860	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	171048873	171048873	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	23183594	23183594	+	IGR	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	24104986	24104986	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	25264642	25264642	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	37059461	37059461	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	40570767	40570767	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	44507020	44507020	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	46954985	46954985	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48087424	48087424	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	49736767	49736768	+	IGR	INS	-	AC	AC			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	50241410	50241410	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	50565521	50565521	+	IGR	DEL	A	-	-	rs80328746		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	6107162	6107162	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63569013	63569013	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	67340985	67340985	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	67590361	67590361	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	74714341	74714341	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	76791782	76791782	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	78803326	78803326	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	78806098	78806098	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	79162889	79162889	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	79250624	79250624	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	81266145	81266145	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	81649598	81649598	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	82591723	82591723	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	82627243	82627243	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85361394	85361394	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85725952	85725952	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85872051	85872051	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85930078	85930078	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	86853072	86853072	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	87079561	87079561	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	8828287	8828287	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	8845757	8845757	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	89162465	89162465	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	91169576	91169576	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	93913342	93913342	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	94347043	94347043	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	94882525	94882525	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	95070600	95070600	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	97087226	97087226	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	98641366	98641366	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	99059601	99059601	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	99255002	99255002	+	IGR	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	99508571	99508571	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10665022	10665022	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	108439507	108439507	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	109248464	109248464	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	110251364	110251365	+	IGR	DNP	CC	AA	AA			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	112975306	112975306	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	113088771	113088771	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	118521107	118521107	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	120419768	120419768	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	121226353	121226353	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124910818	124910818	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	125288811	125288811	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	127069719	127069719	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	127136185	127136185	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	127821002	127821002	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	131513730	131513730	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	140808193	140808193	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143715867	143715867	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144845178	144845178	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145245156	145245156	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145422516	145422516	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145716636	145716636	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152819300	152819300	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	19644244	19644244	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	21181966	21181966	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	24471759	24471759	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	30445255	30445255	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	31547709	31547709	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	36183957	36183957	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41162798	41162798	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	45357780	45357780	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	46508627	46508627	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	48765586	48765586	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	52206735	52206735	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	52781813	52781813	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53221036	53221036	+	IGR	SNP	G	C	C	rs148228297	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53881839	53881839	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56721681	56721681	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56731049	56731049	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57709985	57709986	+	IGR	DNP	GG	TT	TT			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57830092	57830092	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61673987	61673987	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61830171	61830171	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	66358987	66358987	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	71219200	71219200	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	76372720	76372720	+	IGR	DEL	T	-	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84524755	84524755	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	89440689	89440689	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	91220636	91220636	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	92663116	92663116	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	96945336	96945336	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	105749463	105749463	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	106309069	106309069	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	108593063	108593063	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	109600890	109600890	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	110146207	110146207	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	112155765	112155765	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	113065206	113065206	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	11491825	11491825	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	115742167	115742167	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	115747551	115747551	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	116224256	116224256	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	116227793	116227793	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	122662048	122662048	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	126753081	126753081	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	127839389	127839390	+	IGR	DNP	GG	TT	TT			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	130095701	130095701	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	131492724	131492724	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	132589350	132589350	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	13589509	13589509	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	136428059	136428059	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138710504	138710504	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	13903029	13903029	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	15108880	15108880	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	20174056	20174056	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	20863963	20863963	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	23494886	23494886	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	29434530	29434530	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	33065291	33065291	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	33819802	33819802	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	33894874	33894874	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	35969169	35969169	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	36225607	36225607	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	37240901	37240901	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43390379	43390379	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43837084	43837084	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	46197	46197	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47034427	47034427	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47038552	47038552	+	IGR	DEL	C	-	-	rs67340045		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47340070	47340070	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47610382	47610382	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47855942	47855942	+	IGR	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	4888931	4888931	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	50762379	50762379	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	54583637	54583637	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5496633	5496633	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	56557821	56557821	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	57769417	57769417	+	IGR	SNP	C	A	A	rs35920369		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	58563502	58563502	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5962142	5962142	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	61222079	61222079	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	64433368	64433368	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	65153340	65153340	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	65223442	65223442	+	IGR	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	65327845	65327845	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	6622701	6622701	+	IGR	SNP	C	A	A	rs67216794		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	68667415	68667415	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	71784680	71784680	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	7256729	7256729	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	72656525	72656525	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73082973	73082973	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	77891476	77891476	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	79217663	79217663	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	79765917	79765917	+	IGR	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	83572855	83572855	+	IGR	DEL	T	-	-	rs148132994		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	84453136	84453136	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86755287	86755287	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	88990643	88990643	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89024398	89024398	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89649996	89649996	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	92609278	92609278	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	92922370	92922370	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	93660527	93660527	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	94276076	94276076	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	95358741	95358741	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	9733302	9733302	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	104775005	104775005	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	111593095	111593095	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	113954322	113954322	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	117279493	117279493	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	118691358	118691358	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	118883078	118883078	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	120525765	120525765	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	1212495	1212495	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	122740719	122740719	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	132191148	132191148	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	16169018	16169018	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	17880709	17880709	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	18074509	18074509	+	IGR	SNP	C	T	T	rs112094610		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	18304607	18304607	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	22231683	22231683	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	22231688	22231688	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	25981999	25981999	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	27677876	27677876	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	28813264	28813264	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	33652788	33652788	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	34688634	34688634	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	34868113	34868113	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	35577354	35577354	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	46376144	46376144	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66478832	66478832	+	IGR	SNP	G	A	A	rs149847921	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66486923	66486923	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	67293346	67293346	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	67335883	67335883	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68400387	68400387	+	IGR	DEL	C	-	-	rs111626719		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68406251	68406251	+	IGR	DEL	A	-	-			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68418736	68418736	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68436837	68436837	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68484536	68484536	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68491140	68491140	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	76090518	76090518	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	77863285	77863285	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	77972878	77972878	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	85433190	85433190	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	86734138	86734138	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	91502888	91502888	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	92149907	92149907	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	102219991	102219991	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	103589953	103589953	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	108051891	108051891	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	108304973	108304973	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	109158430	109158430	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	110703356	110703356	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	112366988	112366988	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	113623512	113623512	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	116943104	116943104	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	120528124	120528124	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	121080778	121080778	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	122238802	122238802	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	1228203	1228203	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	125024840	125024840	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	126217442	126217442	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	126435903	126435903	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	126556281	126556281	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	126560513	126560513	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	127261675	127261675	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	127461451	127461451	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	128115215	128115215	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	128423231	128423231	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	13239807	13239807	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134509751	134509751	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134740747	134740747	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	135007656	135007656	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	135678478	135678478	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	135930168	135930168	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136424587	136424587	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	140244777	140244777	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	141210005	141210005	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	141950552	141950552	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	142124401	142124401	+	IGR	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	142625397	142625397	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	143919971	143919971	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144226225	144226225	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144337923	144337923	+	IGR	SNP	A	G	G	rs112268595		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144337943	144337943	+	IGR	SNP	T	C	C	rs113028137	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144940203	144940203	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144940342	144940342	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145067826	145067826	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146074409	146074409	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146764382	146764382	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146811450	146811450	+	IGR	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	14813861	14813861	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	148386469	148386469	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	148877651	148877651	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	150424962	150424962	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	150432655	150432655	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	151742007	151742007	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	154986376	154986376	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	16069478	16069478	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	16301046	16301046	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	17922010	17922010	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	18034785	18034785	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	20335734	20335734	+	IGR	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	22540624	22540624	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	23326320	23326320	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	24417580	24417580	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25429977	25429977	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25789850	25789850	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25908244	25908244	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26397828	26397828	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	3058966	3058966	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	33458464	33458464	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	34013603	34013603	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	34175640	34175640	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	36771340	36771340	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	36941076	36941076	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	37323183	37323183	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	39257293	39257293	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	39669795	39669795	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	40051621	40051621	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	43245976	43245976	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	45316921	45316921	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	45565530	45565530	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	45645494	45645494	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	50248024	50248024	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	51855078	51855078	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	55255232	55255232	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	5581557	5581557	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	5607294	5607294	+	IGR	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	5725509	5725509	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	58012156	58012156	+	IGR	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	62090955	62090955	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	62830216	62830216	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	64013872	64013872	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	6962498	6962498	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	72729261	72729261	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74387779	74387779	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	75150266	75150266	+	IGR	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	7775890	7775890	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	77922240	77922240	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	78593508	78593508	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79479147	79479147	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	81188396	81188396	+	IGR	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	81841076	81841076	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	82105521	82105521	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	86274241	86274241	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	88488855	88488855	+	IGR	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89333667	89333667	+	IGR	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	90213124	90213124	+	IGR	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	90412875	90412875	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	91994169	91994169	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92477444	92477444	+	IGR	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92994729	92994729	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	93405823	93405823	+	IGR	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	9370925	9370925	+	IGR	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	97073907	97073907	+	IGR	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	97560488	97560488	+	IGR	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59011789	59011789	+	IGR	SNP	C	G	G	rs79769136		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9931578	9931578	+	IGR	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9987431	9987431	+	IGR	SNP	G	A	A	rs79402790		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108389573	108389573	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VDR	7421	broad.mit.edu	37	12	48287509	48287509	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIT	5212	broad.mit.edu	37	2	37005830	37005830	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VRK2	7444	broad.mit.edu	37	2	58161528	58161528	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSIG1	340547	broad.mit.edu	37	X	107320239	107320239	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSTM2L	128434	broad.mit.edu	37	20	36569853	36569853	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASH2P	375260	broad.mit.edu	37	2	114343962	114343962	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR70	55100	broad.mit.edu	37	5	37705840	37705840	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR72	256764	broad.mit.edu	37	15	54015037	54015037	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR87	83889	broad.mit.edu	37	19	38385060	38385060	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIPI1	55062	broad.mit.edu	37	17	66423293	66423293	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT9B	7484	broad.mit.edu	37	17	44950115	44950115	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WRNIP1	56897	broad.mit.edu	37	6	2784472	2784472	+	Intron	SNP	A	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWOX	51741	broad.mit.edu	37	16	78224301	78224301	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIAP	331	broad.mit.edu	37	X	123020085	123020085	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP2	7512	broad.mit.edu	37	X	128880532	128880532	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC5	7520	broad.mit.edu	37	2	217052548	217052548	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC5	7520	broad.mit.edu	37	2	217052550	217052550	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBED1	9189	broad.mit.edu	37	X	2407351	2407351	+	Silent	SNP	G	A	A	rs141520513		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB44	29068	broad.mit.edu	37	11	130172339	130172339	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H14	79882	broad.mit.edu	37	14	89053511	89053512	+	Intron	INS	-	T	T	rs34911850		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H7A	29066	broad.mit.edu	37	16	11867982	11867982	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAT	57623	broad.mit.edu	37	8	135660211	135660211	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106365650	106365650	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106814178	106814178	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM2	23619	broad.mit.edu	37	19	57286907	57286907	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM2	23619	broad.mit.edu	37	19	57286909	57286909	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT3	64393	broad.mit.edu	37	3	178764156	178764156	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF14	7561	broad.mit.edu	37	19	19822504	19822504	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF154	7710	broad.mit.edu	37	19	58213862	58213862	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF215	7762	broad.mit.edu	37	11	6960952	6960952	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22271775	22271775	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF320	162967	broad.mit.edu	37	19	53396151	53396151	+	5'Flank	SNP	A	C	C	rs112591593	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF365	22891	broad.mit.edu	37	10	64174676	64174676	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF407	55628	broad.mit.edu	37	18	72343705	72343705	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF407	55628	broad.mit.edu	37	18	72755389	72755389	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF419	79744	broad.mit.edu	37	19	58002982	58002983	+	Intron	DNP	CC	AA	AA			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF461	92283	broad.mit.edu	37	19	37129906	37129906	+	Silent	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22847698	22847698	+	Intron	SNP	G	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF567	163081	broad.mit.edu	37	19	37210537	37210537	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF658	26149	broad.mit.edu	37	9	40796310	40796310	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF75D	7626	broad.mit.edu	37	X	134392326	134392326	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF75D	7626	broad.mit.edu	37	X	134424657	134424657	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88604713	88604713	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF98	148198	broad.mit.edu	37	19	22574562	22574562	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPBP2	124626	broad.mit.edu	37	17	38032838	38032838	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN18	65982	broad.mit.edu	37	19	58601464	58601464	+	Silent	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	80096208	80096208	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	117928058	117928058	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	119350970	119350970	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	127158086	127158086	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	22951656	22951656	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30978748	30978748	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	115170223	115170223	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	24739778	24739778	+	5'Flank	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31265986	31265986	+	RNA	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	65355772	65355772	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	96891838	96891838	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	76448670	76448670	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	78405330	78405330	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19868594	19868594	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22497344	22497344	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	38480405	38480405	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98103556	98103556	+	Intron	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20617942	20617942	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22472993	22472993	+	RNA	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	36040651	36040651	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	38442607	38442607	+	Intron	SNP	G	A	A	rs146989377	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	94304964	94304965	+	Intron	DEL	AT	-	-	rs147131298		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	21893573	21893573	+	5'Flank	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34741289	34741289	+	5'Flank	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	73453100	73453100	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39854580	39854580	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	40126778	40126778	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	40240865	40240865	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	24115476	24115476	+	Intron	SNP	A	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	119718217	119718217	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142635028	142635028	+	Intron	SNP	C	T	T	rs112560907		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142666197	142666197	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142781966	142781966	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142794268	142794268	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148881154	148881154	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152321170	152321170	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163286716	163286716	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	200325321	200325324	+	Intron	DEL	AAAC	-	-	rs66794236		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	243225927	243225927	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	56151033	56151033	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	59319959	59319959	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	68524658	68524658	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	89035173	89035173	+	Intron	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	93799855	93799855	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	1983562	1983562	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	48920469	48920469	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10573036	10573036	+	Intron	SNP	T	C	C	rs140110512	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	12702308	12702309	+	Intron	DNP	CC	AA	AA			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	145652342	145652342	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	66215380	66215380	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	78290710	78290710	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	846250	846250	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96587291	96587291	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96603628	96603628	+	Intron	SNP	G	T	T	rs139557299	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	118287920	118287920	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	162473490	162473490	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	165228695	165228695	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	195438340	195438340	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	27876087	27876087	+	5'Flank	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	8525300	8525300	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	100095598	100095598	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	129415188	129415188	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13848681	13848681	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	182929859	182929859	+	Intron	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190832607	190832607	+	Intron	SNP	A	G	G	rs112360347	by1000genomes	TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	34028075	34028076	+	Intron	DNP	TG	GT	GT			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	151550035	151550035	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	152171988	152171988	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	3477492	3477492	+	Intron	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	87620487	87620487	+	Intron	DEL	A	-	-	rs71613079		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	133889646	133889646	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	147371606	147371606	+	Intron	SNP	G	C	C	rs149336062		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	151530646	151530646	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	19147874	19147874	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	74802923	74802923	+	Intron	SNP	C	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	11387712	11387712	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	37760150	37760150	+	Intron	SNP	T	C	C			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	123133765	123133765	+	Intron	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12442955	12442955	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12502705	12502705	+	Intron	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	64313372	64313372	+	Intron	SNP	C	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66462174	66462174	+	Intron	SNP	T	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66514136	66514136	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66515161	66515161	+	Intron	SNP	A	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68409028	68409029	+	5'Flank	INS	-	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	14985	14985	+	Silent	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	1594	1594	+	5'Flank	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	27235680	27235680	+	Intron	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	27318608	27318609	+	Intron	DNP	CC	AA	AA			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
