Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7703884	7703884	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7703884	7703884	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA6	23460	broad.mit.edu	37	17	67119514	67119514	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA6	23460	broad.mit.edu	37	17	67119514	67119514	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC2	1244	broad.mit.edu	37	10	101567314	101567314	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC2	1244	broad.mit.edu	37	10	101567314	101567314	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD5	51099	broad.mit.edu	37	3	43743969	43743969	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD5	51099	broad.mit.edu	37	3	43743969	43743969	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOX3	8310	broad.mit.edu	37	4	8428374	8428374	+	Intron	SNP	A	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOX3	8310	broad.mit.edu	37	4	8428374	8428374	+	Intron	SNP	A	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20548643	20548643	+	Missense_Mutation	SNP	T	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM11	4185	broad.mit.edu	37	17	42850753	42850753	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM11	4185	broad.mit.edu	37	17	42850753	42850753	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM18	8749	broad.mit.edu	37	8	39537627	39537627	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM18	8749	broad.mit.edu	37	8	39521223	39521223	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM18	8749	broad.mit.edu	37	8	39537627	39537627	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS14	140766	broad.mit.edu	37	10	72511833	72511833	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS14	140766	broad.mit.edu	37	10	72511833	72511833	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS7	11173	broad.mit.edu	37	15	79059040	79059041	+	Missense_Mutation	DNP	AT	GC	GC	rs144043775	by1000genomes	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167787447	167787447	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167787447	167787447	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY3	109	broad.mit.edu	37	2	25062621	25062621	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	50311960	50311960	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	50311960	50311960	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALB	213	broad.mit.edu	37	4	74270225	74270225	+	Intron	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALB	213	broad.mit.edu	37	4	74270225	74270225	+	Intron	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG10	84920	broad.mit.edu	37	12	34179553	34179553	+	Silent	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29445295	29445295	+	Intron	SNP	T	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29445295	29445295	+	Intron	SNP	T	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73676099	73676099	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73676099	73676099	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD1	270	broad.mit.edu	37	1	115231166	115231166	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD1	270	broad.mit.edu	37	1	115231166	115231166	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD3	272	broad.mit.edu	37	11	10524122	10524122	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD3	272	broad.mit.edu	37	11	10524122	10524122	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41572528	41572528	+	Missense_Mutation	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41572528	41572528	+	Missense_Mutation	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114278606	114278606	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114278606	114278606	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD22	118932	broad.mit.edu	37	10	90582652	90582652	+	3'UTR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD22	118932	broad.mit.edu	37	10	90582652	90582652	+	3'UTR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD7	56311	broad.mit.edu	37	7	117876025	117876025	+	Intron	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD7	56311	broad.mit.edu	37	7	117876025	117876025	+	Intron	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26621016	26621016	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26621016	26621016	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA6	309	broad.mit.edu	37	5	150509007	150509007	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA6	309	broad.mit.edu	37	5	150509007	150509007	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AREG	374	broad.mit.edu	37	4	75312420	75312420	+	Silent	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AREG	374	broad.mit.edu	37	4	75312420	75312420	+	Silent	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156906916	156906916	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156906916	156906916	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID1A	8289	broad.mit.edu	37	1	27105723	27105723	+	Silent	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID1A	8289	broad.mit.edu	37	1	27106483	27106483	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID1A	8289	broad.mit.edu	37	1	27106495	27106495	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID1A	8289	broad.mit.edu	37	1	27105723	27105723	+	Silent	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID1A	8289	broad.mit.edu	37	1	27106483	27106483	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID1A	8289	broad.mit.edu	37	1	27106495	27106495	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB10	136371	broad.mit.edu	37	7	150884096	150884096	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB10	136371	broad.mit.edu	37	7	150884096	150884096	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A4	84239	broad.mit.edu	37	3	193201715	193201721	+	Intron	DEL	TGGAACT	-	-			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A4	84239	broad.mit.edu	37	3	193201715	193201721	+	Intron	DEL	TGGAACT	-	-			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B4	493	broad.mit.edu	37	1	203683462	203683462	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B4	493	broad.mit.edu	37	1	203652429	203652429	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B4	493	broad.mit.edu	37	1	203683462	203683462	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	116889227	116889227	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	116889227	116889227	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRX	546	broad.mit.edu	37	X	76777711	76777711	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRX	546	broad.mit.edu	37	X	76777711	76777711	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRX	546	broad.mit.edu	37	X	76875878	76875878	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L2	23215	broad.mit.edu	37	1	171511222	171511222	+	Missense_Mutation	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L2	23215	broad.mit.edu	37	1	171511222	171511222	+	Missense_Mutation	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL7B	9275	broad.mit.edu	37	7	72954202	72954202	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL7B	9275	broad.mit.edu	37	7	72954202	72954202	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEST3	144453	broad.mit.edu	37	12	70048953	70048953	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEST3	144453	broad.mit.edu	37	12	70048953	70048953	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPI	671	broad.mit.edu	37	20	36965506	36965506	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPI	671	broad.mit.edu	37	20	36965524	36965524	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPI	671	broad.mit.edu	37	20	36965569	36965569	+	Missense_Mutation	SNP	G	A	A	rs5743549	byFrequency	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPI	671	broad.mit.edu	37	20	36965629	36965629	+	3'UTR	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPI	671	broad.mit.edu	37	20	36965506	36965506	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPI	671	broad.mit.edu	37	20	36965524	36965524	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPI	671	broad.mit.edu	37	20	36965569	36965569	+	Missense_Mutation	SNP	G	A	A	rs5743549	byFrequency	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPI	671	broad.mit.edu	37	20	36965629	36965629	+	3'UTR	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf88	399949	broad.mit.edu	37	11	111385678	111385678	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf88	399949	broad.mit.edu	37	11	111385678	111385678	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf77	146723	broad.mit.edu	37	17	72588653	72588653	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf77	146723	broad.mit.edu	37	17	72588653	72588653	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165703320	165703320	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165703320	165703320	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13409899	13409899	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13409899	13409899	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181753820	181753820	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181753820	181753820	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201044651	201044651	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201044651	201044651	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAP2	10486	broad.mit.edu	37	6	17531652	17531652	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAP2	10486	broad.mit.edu	37	6	17531652	17531652	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD14	79092	broad.mit.edu	37	17	78176159	78176159	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD14	79092	broad.mit.edu	37	17	78176159	78176159	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASZ1	54897	broad.mit.edu	37	1	10703261	10703261	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASZ1	54897	broad.mit.edu	37	1	10703261	10703261	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D1B	200014	broad.mit.edu	37	1	52827128	52827128	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D1B	200014	broad.mit.edu	37	1	52827128	52827128	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC123	84902	broad.mit.edu	37	19	33370117	33370117	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC123	84902	broad.mit.edu	37	19	33370119	33370119	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC73	493860	broad.mit.edu	37	11	32636029	32636029	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC73	493860	broad.mit.edu	37	11	32636029	32636029	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88A	55704	broad.mit.edu	37	2	55570736	55570736	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88A	55704	broad.mit.edu	37	2	55570736	55570736	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNE2	9134	broad.mit.edu	37	8	95897175	95897175	+	Intron	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNE2	9134	broad.mit.edu	37	8	95897175	95897175	+	Intron	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNL1	57018	broad.mit.edu	37	3	156870087	156870087	+	Intron	SNP	A	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNL1	57018	broad.mit.edu	37	3	156870087	156870087	+	Intron	SNP	A	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD101	9398	broad.mit.edu	37	1	117559956	117559957	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD101	9398	broad.mit.edu	37	1	117559956	117559957	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD5L	922	broad.mit.edu	37	1	157801571	157801571	+	3'UTR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD93	22918	broad.mit.edu	37	20	23066732	23066732	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD93	22918	broad.mit.edu	37	20	23066732	23066732	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31299636	31299636	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31299636	31299636	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR2	54825	broad.mit.edu	37	5	176008567	176008567	+	Missense_Mutation	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR2	54825	broad.mit.edu	37	5	176016319	176016319	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR2	54825	broad.mit.edu	37	5	176008567	176008567	+	Missense_Mutation	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR2	54825	broad.mit.edu	37	5	176016319	176016319	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDIPT	10423	broad.mit.edu	37	16	29874031	29874031	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDIPT	10423	broad.mit.edu	37	16	29874031	29874031	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK17	5128	broad.mit.edu	37	12	96688884	96688884	+	Missense_Mutation	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK17	5128	broad.mit.edu	37	12	96688884	96688884	+	Missense_Mutation	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CH25H	9023	broad.mit.edu	37	10	90966547	90966547	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CH25H	9023	broad.mit.edu	37	10	90966547	90966547	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRDL2	25884	broad.mit.edu	37	11	74441858	74441858	+	Silent	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRDL2	25884	broad.mit.edu	37	11	74441858	74441858	+	Silent	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP1	6249	broad.mit.edu	37	12	122818554	122818554	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP1	6249	broad.mit.edu	37	12	122818554	122818554	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPX	10845	broad.mit.edu	37	15	65472656	65472656	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPX	10845	broad.mit.edu	37	15	65472656	65472656	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA4	1262	broad.mit.edu	37	11	6260721	6260721	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA4	1262	broad.mit.edu	37	11	6260721	6260721	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41374627	41374627	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41323804	41323804	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41374627	41374627	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100170106	100170106	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100170106	100170106	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL13A1	1305	broad.mit.edu	37	10	71654284	71654284	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL13A1	1305	broad.mit.edu	37	10	71654284	71654284	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32145269	32145269	+	Silent	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32145269	32145269	+	Silent	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70916660	70916660	+	Silent	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70916660	70916660	+	Silent	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139611019	139611019	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139631546	139631546	+	Intron	SNP	T	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139631568	139631568	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139767679	139767679	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139611019	139611019	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139631546	139631546	+	Intron	SNP	T	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139631568	139631568	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139767679	139767679	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL23A1	91522	broad.mit.edu	37	5	177715330	177715330	+	Missense_Mutation	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL23A1	91522	broad.mit.edu	37	5	177715330	177715330	+	Missense_Mutation	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86581035	86581035	+	Silent	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86581035	86581035	+	Silent	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189926230	189926230	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPG	22820	broad.mit.edu	37	3	128976550	128976550	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPG	22820	broad.mit.edu	37	3	128976550	128976550	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO2B	10391	broad.mit.edu	37	15	68937730	68937730	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO2B	10391	broad.mit.edu	37	15	68937730	68937730	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA4	51200	broad.mit.edu	37	7	129939236	129939236	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA4	51200	broad.mit.edu	37	7	129939236	129939236	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT1A	1374	broad.mit.edu	37	11	68530172	68530172	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT1A	1374	broad.mit.edu	37	11	68530172	68530172	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RA	1438	broad.mit.edu	37	X	1403675	1403675	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RA	1438	broad.mit.edu	37	X	1403675	1403675	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RB	1439	broad.mit.edu	37	22	37329941	37329941	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RB	1439	broad.mit.edu	37	22	37329941	37329941	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34209109	34209109	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34209109	34209109	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113323246	113323246	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113563023	113563023	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113323246	113323246	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113563023	113563023	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA1	1495	broad.mit.edu	37	5	138118888	138118888	+	Missense_Mutation	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA1	1495	broad.mit.edu	37	5	138118888	138118888	+	Missense_Mutation	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSG	1511	broad.mit.edu	37	14	25044575	25044575	+	Silent	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSG	1511	broad.mit.edu	37	14	25044575	25044575	+	Silent	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117400700	117400700	+	Missense_Mutation	SNP	A	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117400700	117400700	+	Missense_Mutation	SNP	A	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP2	26999	broad.mit.edu	37	5	156786241	156786241	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP2	26999	broad.mit.edu	37	5	156786241	156786241	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTH1	9267	broad.mit.edu	37	17	76698116	76698117	+	Intron	INS	-	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTH1	9267	broad.mit.edu	37	17	76705803	76705803	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTH1	9267	broad.mit.edu	37	17	76698116	76698117	+	Intron	INS	-	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTH1	9267	broad.mit.edu	37	17	76705803	76705803	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBT	1629	broad.mit.edu	37	1	100679043	100679043	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBT	1629	broad.mit.edu	37	1	100679043	100679043	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK1	9201	broad.mit.edu	37	13	36382450	36382450	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK1	9201	broad.mit.edu	37	13	36382450	36382450	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK3	85443	broad.mit.edu	37	3	36779750	36779750	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK3	85443	broad.mit.edu	37	3	36779750	36779750	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX50	79009	broad.mit.edu	37	10	70700750	70700750	+	Intron	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX50	79009	broad.mit.edu	37	10	70700750	70700750	+	Intron	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137150612	137150612	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137150612	137150612	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50122615	50122615	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50122615	50122615	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH2	1730	broad.mit.edu	37	X	96197255	96197256	+	Intron	INS	-	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH2	1730	broad.mit.edu	37	X	96197255	96197256	+	Intron	INS	-	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISP2	85455	broad.mit.edu	37	15	40660665	40660665	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISP2	85455	broad.mit.edu	37	15	40660665	40660665	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRTC2	63946	broad.mit.edu	37	19	42354309	42354309	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRTC2	63946	broad.mit.edu	37	19	42354309	42354309	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMWD	1762	broad.mit.edu	37	19	46289666	46289666	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMWD	1762	broad.mit.edu	37	19	46289666	46289666	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNA2	1763	broad.mit.edu	37	10	70191626	70191644	+	Frame_Shift_Del	DEL	CATATCGTAGTTGTTTTTC	-	-	rs61855090	by1000genomes	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNA2	1763	broad.mit.edu	37	10	70191626	70191644	+	Frame_Shift_Del	DEL	CATATCGTAGTTGTTTTTC	-	-	rs61855090	by1000genomes	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196753051	196753051	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196753051	196753051	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK9	23348	broad.mit.edu	37	13	99476785	99476786	+	Intron	INS	-	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK9	23348	broad.mit.edu	37	13	99476785	99476786	+	Intron	INS	-	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DQX1	165545	broad.mit.edu	37	2	74746118	74746118	+	Intron	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DQX1	165545	broad.mit.edu	37	2	74746118	74746118	+	Intron	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRGX	644168	broad.mit.edu	37	10	50594941	50594941	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRGX	644168	broad.mit.edu	37	10	50594941	50594941	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRP2	1821	broad.mit.edu	37	X	100515012	100515012	+	Intron	SNP	T	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP19	142679	broad.mit.edu	37	2	183948268	183948268	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP19	142679	broad.mit.edu	37	2	183948268	183948268	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP27	92235	broad.mit.edu	37	1	167082806	167082806	+	Intron	DEL	C	-	-			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP27	92235	broad.mit.edu	37	1	167082806	167082806	+	Intron	DEL	C	-	-			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95457218	95457218	+	Intron	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95457218	95457218	+	Intron	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A1P9	441032	broad.mit.edu	37	4	106406047	106406047	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A1P9	441032	broad.mit.edu	37	4	106406047	106406047	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFNA2	1943	broad.mit.edu	37	19	1299836	1299836	+	Silent	SNP	C	T	T	rs140490619		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFNA2	1943	broad.mit.edu	37	19	1299836	1299836	+	Silent	SNP	C	T	T	rs140490619		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55249005	55249005	+	Missense_Mutation	SNP	G	T	T	rs146024686		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55249007	55249007	+	Missense_Mutation	SNP	G	T	T	rs147149347		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55249253	55249253	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55249005	55249005	+	Missense_Mutation	SNP	G	T	T	rs146024686		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55249007	55249007	+	Missense_Mutation	SNP	G	T	T	rs147149347		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55249253	55249253	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK2	5610	broad.mit.edu	37	2	37376053	37376053	+	5'UTR	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK2	5610	broad.mit.edu	37	2	37376053	37376053	+	5'UTR	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELL2	22936	broad.mit.edu	37	5	95234413	95234413	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELL2	22936	broad.mit.edu	37	5	95234413	95234413	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD7	57089	broad.mit.edu	37	10	101458381	101458381	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD7	57089	broad.mit.edu	37	10	101458381	101458381	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPCAM	4072	broad.mit.edu	37	2	47612194	47612194	+	Intron	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPCAM	4072	broad.mit.edu	37	2	47612194	47612194	+	Intron	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPDR1	54749	broad.mit.edu	37	7	37988642	37988642	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPDR1	54749	broad.mit.edu	37	7	37988642	37988642	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESPL1	9700	broad.mit.edu	37	12	53663492	53663492	+	Silent	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESPL1	9700	broad.mit.edu	37	12	53663492	53663492	+	Silent	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESX1	80712	broad.mit.edu	37	X	103495442	103495442	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESX1	80712	broad.mit.edu	37	X	103495442	103495442	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETFA	2108	broad.mit.edu	37	15	76523762	76523762	+	Intron	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETFA	2108	broad.mit.edu	37	15	76523762	76523762	+	Intron	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETNK1	55500	broad.mit.edu	37	12	22824373	22824373	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETNK1	55500	broad.mit.edu	37	12	22824373	22824373	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133622733	133622733	+	Missense_Mutation	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133622733	133622733	+	Missense_Mutation	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FADS2	9415	broad.mit.edu	37	11	61625047	61625048	+	Intron	INS	-	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FADS2	9415	broad.mit.edu	37	11	61625047	61625048	+	Intron	INS	-	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123B	139285	broad.mit.edu	37	X	63411898	63411898	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123B	139285	broad.mit.edu	37	X	63411898	63411898	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177199216	177199216	+	Silent	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177199216	177199216	+	Silent	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71B	153745	broad.mit.edu	37	5	156593299	156593299	+	5'Flank	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A3	727830	broad.mit.edu	37	9	40702749	40702749	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83B	222584	broad.mit.edu	37	6	54805254	54805254	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83B	222584	broad.mit.edu	37	6	54805254	54805254	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCL	55120	broad.mit.edu	37	2	58459075	58459075	+	Intron	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARP1	10160	broad.mit.edu	37	13	99042200	99042200	+	Intron	SNP	T	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARP1	10160	broad.mit.edu	37	13	99042200	99042200	+	Intron	SNP	T	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FFAR1	2864	broad.mit.edu	37	19	35842897	35842897	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FFAR1	2864	broad.mit.edu	37	19	35842897	35842897	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF4	2249	broad.mit.edu	37	11	69588893	69588893	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF4	2249	broad.mit.edu	37	11	69588893	69588893	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP9L	360132	broad.mit.edu	37	7	55766907	55766907	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP9L	360132	broad.mit.edu	37	7	55766907	55766907	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152279939	152279939	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	29012365	29012365	+	Missense_Mutation	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	29012365	29012365	+	Missense_Mutation	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLVCR2	55640	broad.mit.edu	37	14	76045408	76045408	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLVCR2	55640	broad.mit.edu	37	14	76045408	76045408	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240370635	240370635	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240370635	240370635	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXL1	2300	broad.mit.edu	37	16	86613358	86613358	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXL1	2300	broad.mit.edu	37	16	86613358	86613358	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12735649	12735649	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12735649	12735649	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRYL	285527	broad.mit.edu	37	4	48583536	48583536	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRYL	285527	broad.mit.edu	37	4	48583536	48583536	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCB	84075	broad.mit.edu	37	14	44973895	44973896	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCB	84075	broad.mit.edu	37	14	44973895	44973896	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49247259	49247259	+	Missense_Mutation	SNP	C	G	G	rs140960768	byFrequency	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49247259	49247259	+	Missense_Mutation	SNP	C	G	G	rs140960768	byFrequency	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL5	56884	broad.mit.edu	37	4	162577586	162577586	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL5	56884	broad.mit.edu	37	4	162577586	162577586	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FST	10468	broad.mit.edu	37	5	52781596	52781596	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FST	10468	broad.mit.edu	37	5	52781596	52781596	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39201957	39201957	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39201957	39201957	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABPB2	126626	broad.mit.edu	37	1	151070267	151070267	+	Intron	DEL	G	-	-			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA6	2559	broad.mit.edu	37	5	161116336	161116336	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA6	2559	broad.mit.edu	37	5	161116336	161116336	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46060684	46060684	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46060684	46060684	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRQ	55879	broad.mit.edu	37	X	151821552	151821552	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRQ	55879	broad.mit.edu	37	X	151821552	151821552	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GADD45A	1647	broad.mit.edu	37	1	68153432	68153432	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GADD45A	1647	broad.mit.edu	37	1	68153432	68153432	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155252757	155252757	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155252757	155252757	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP5	115362	broad.mit.edu	37	1	89735197	89735197	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP5	115362	broad.mit.edu	37	1	89735197	89735197	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCM2	9247	broad.mit.edu	37	6	10874219	10874219	+	3'UTR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCM2	9247	broad.mit.edu	37	6	10874219	10874219	+	3'UTR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120593036	120593036	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120593036	120593036	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDAP1	54332	broad.mit.edu	37	8	75272325	75272325	+	Intron	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDAP1	54332	broad.mit.edu	37	8	75272325	75272325	+	Intron	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGNBP2	79893	broad.mit.edu	37	17	34942353	34942353	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGNBP2	79893	broad.mit.edu	37	17	34942353	34942353	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLG1	2734	broad.mit.edu	37	16	74508689	74508689	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR111	222611	broad.mit.edu	37	6	47647951	47647951	+	Missense_Mutation	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR111	222611	broad.mit.edu	37	6	47647951	47647951	+	Missense_Mutation	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR116	221395	broad.mit.edu	37	6	46839842	46839842	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR116	221395	broad.mit.edu	37	6	46839842	46839842	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR141	353345	broad.mit.edu	37	7	37780032	37780032	+	Missense_Mutation	SNP	G	T	T	rs141399721	by1000genomes	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR141	353345	broad.mit.edu	37	7	37780032	37780032	+	Missense_Mutation	SNP	G	T	T	rs141399721	by1000genomes	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR142	350383	broad.mit.edu	37	17	72368476	72368476	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR142	350383	broad.mit.edu	37	17	72368476	72368476	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR45	11250	broad.mit.edu	37	2	105859448	105859448	+	3'UTR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR45	11250	broad.mit.edu	37	2	105859448	105859448	+	3'UTR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR64	10149	broad.mit.edu	37	X	19031921	19031921	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR64	10149	broad.mit.edu	37	X	19031921	19031921	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK5	2901	broad.mit.edu	37	19	42563734	42563734	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK5	2901	broad.mit.edu	37	19	42563734	42563734	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	6903372	6903372	+	Silent	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	6903372	6903372	+	Silent	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA1	2938	broad.mit.edu	37	6	52671384	52671384	+	5'Flank	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA1	2938	broad.mit.edu	37	6	52671384	52671384	+	5'Flank	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTDC1	79712	broad.mit.edu	37	2	144765120	144765120	+	Intron	SNP	T	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTDC1	79712	broad.mit.edu	37	2	144765120	144765120	+	Intron	SNP	T	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA1B	2979	broad.mit.edu	37	6	42162321	42162321	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA1B	2979	broad.mit.edu	37	6	42162321	42162321	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZMA	3001	broad.mit.edu	37	5	54404187	54404187	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZMA	3001	broad.mit.edu	37	5	54404187	54404187	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H6PD	9563	broad.mit.edu	37	1	9323676	9323676	+	Missense_Mutation	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H6PD	9563	broad.mit.edu	37	1	9323676	9323676	+	Missense_Mutation	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18630139	18630139	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186056670	186056670	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186106738	186106739	+	Frame_Shift_Ins	INS	-	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186056670	186056670	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186106738	186106739	+	Frame_Shift_Ins	INS	-	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTATSF1	27336	broad.mit.edu	37	X	135582376	135582376	+	Intron	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTATSF1	27336	broad.mit.edu	37	X	135582376	135582376	+	Intron	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1D	3352	broad.mit.edu	37	1	23520467	23520467	+	Silent	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1D	3352	broad.mit.edu	37	1	23520467	23520467	+	Silent	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA16	3449	broad.mit.edu	37	9	21216620	21216620	+	3'UTR	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA16	3449	broad.mit.edu	37	9	21216620	21216620	+	3'UTR	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL28RA	163702	broad.mit.edu	37	1	24484070	24484070	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL28RA	163702	broad.mit.edu	37	1	24484070	24484070	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP1	8826	broad.mit.edu	37	15	90984897	90984897	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP1	8826	broad.mit.edu	37	15	90984897	90984897	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRS4	8471	broad.mit.edu	37	X	107978288	107978288	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRS4	8471	broad.mit.edu	37	X	107978288	107978288	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISL1	3670	broad.mit.edu	37	5	50683565	50683565	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISL1	3670	broad.mit.edu	37	5	50683565	50683565	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA5	3678	broad.mit.edu	37	12	54799729	54799729	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA5	3678	broad.mit.edu	37	12	54799729	54799729	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15688901	15688902	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15697459	15697459	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15688901	15688902	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15697459	15697459	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31424351	31424351	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31424351	31424351	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB4	3691	broad.mit.edu	37	17	73748568	73748568	+	Missense_Mutation	SNP	G	T	T	rs140930313		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB4	3691	broad.mit.edu	37	17	73748568	73748568	+	Missense_Mutation	SNP	G	T	T	rs140930313		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54783839	54783839	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54783839	54783839	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB1	7881	broad.mit.edu	37	3	156234123	156234123	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB1	7881	broad.mit.edu	37	3	156234123	156234123	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB2	8514	broad.mit.edu	37	1	6150539	6150539	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB2	8514	broad.mit.edu	37	1	6150539	6150539	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163693088	163693088	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163693088	163693088	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ16	3773	broad.mit.edu	37	17	68128482	68128482	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ16	3773	broad.mit.edu	37	17	68128482	68128482	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ6	3763	broad.mit.edu	37	21	39087237	39087237	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ6	3763	broad.mit.edu	37	21	39087237	39087237	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT1	57582	broad.mit.edu	37	9	138657030	138657030	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT1	57582	broad.mit.edu	37	9	138657030	138657030	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36792969	36792969	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36792969	36792969	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD19	146212	broad.mit.edu	37	16	67328886	67328886	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD19	146212	broad.mit.edu	37	16	67328886	67328886	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD7	154881	broad.mit.edu	37	7	66103260	66103260	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD7	154881	broad.mit.edu	37	7	66103260	66103260	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0907	22889	broad.mit.edu	37	1	155895471	155895471	+	Missense_Mutation	SNP	T	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0907	22889	broad.mit.edu	37	1	155895471	155895471	+	Missense_Mutation	SNP	T	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24809201	24809201	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24809201	24809201	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1383	54627	broad.mit.edu	37	1	232941882	232941882	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1383	54627	broad.mit.edu	37	1	232941882	232941882	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94171024	94171024	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94171024	94171024	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1712	80817	broad.mit.edu	37	4	175220304	175220304	+	Missense_Mutation	SNP	G	A	A	rs73011419	byFrequency;by1000genomes	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1712	80817	broad.mit.edu	37	4	175220304	175220304	+	Missense_Mutation	SNP	G	A	A	rs73011419	byFrequency;by1000genomes	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF19	124602	broad.mit.edu	37	17	72339151	72339151	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF19	124602	broad.mit.edu	37	17	72339151	72339151	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIT	3815	broad.mit.edu	37	4	55604558	55604558	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL6	89857	broad.mit.edu	37	3	183273319	183273319	+	Silent	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL6	89857	broad.mit.edu	37	3	183273319	183273319	+	Silent	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KMO	8564	broad.mit.edu	37	1	241714081	241714081	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPRP	448834	broad.mit.edu	37	1	152732100	152732100	+	Silent	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPRP	448834	broad.mit.edu	37	1	152732100	152732100	+	Silent	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT26	353288	broad.mit.edu	37	17	38922971	38922971	+	Intron	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT26	353288	broad.mit.edu	37	17	38922971	38922971	+	Intron	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT27	342574	broad.mit.edu	37	17	38937432	38937432	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT27	342574	broad.mit.edu	37	17	38937432	38937432	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT72	140807	broad.mit.edu	37	12	52980700	52980700	+	Intron	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT72	140807	broad.mit.edu	37	12	52980700	52980700	+	Intron	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT76	51350	broad.mit.edu	37	12	53169138	53169138	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT76	51350	broad.mit.edu	37	12	53169138	53169138	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT82	3888	broad.mit.edu	37	12	52797658	52797658	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT82	3888	broad.mit.edu	37	12	52797658	52797658	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-3	386682	broad.mit.edu	37	21	45978487	45978487	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-3	386682	broad.mit.edu	37	21	45978487	45978487	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL4	91133	broad.mit.edu	37	18	6264070	6264070	+	Intron	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL4	91133	broad.mit.edu	37	18	6264070	6264070	+	Intron	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107692568	107692568	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107732056	107732056	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107692568	107692568	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107732056	107732056	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE2C	353140	broad.mit.edu	37	1	152648491	152648491	+	5'UTR	SNP	C	A	A	rs12073860	byFrequency;by1000genomes	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE2C	353140	broad.mit.edu	37	1	152648491	152648491	+	5'UTR	SNP	C	A	A	rs12073860	byFrequency;by1000genomes	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGMN	5641	broad.mit.edu	37	14	93182689	93182689	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA6	79168	broad.mit.edu	37	19	54744954	54744954	+	Silent	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA6	79168	broad.mit.edu	37	19	54744954	54744954	+	Silent	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440563	440563	broad.mit.edu	37	1	13183250	13183250	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440563	440563	broad.mit.edu	37	1	13183250	13183250	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC643486	643486	broad.mit.edu	37	X	95592751	95592751	+	RNA	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC643486	643486	broad.mit.edu	37	X	95592751	95592751	+	RNA	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21937578	21937578	+	RNA	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21937578	21937578	+	RNA	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23252874	23252874	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99771298	99771298	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99771298	99771298	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIG1	26018	broad.mit.edu	37	3	66436675	66436675	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIG1	26018	broad.mit.edu	37	3	66436675	66436675	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141214102	141214102	+	Silent	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141299315	141299315	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141214102	141214102	+	Silent	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141299315	141299315	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSP1	4046	broad.mit.edu	37	11	1905191	1905191	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSP1	4046	broad.mit.edu	37	11	1905191	1905191	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	25098931	25098931	+	Silent	SNP	A	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	25098931	25098931	+	Silent	SNP	A	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP4	51213	broad.mit.edu	37	X	114536683	114536683	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP4	51213	broad.mit.edu	37	X	114536683	114536683	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77975064	77975064	+	Intron	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77975064	77975064	+	Intron	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2	4133	broad.mit.edu	37	2	210557723	210557723	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2	4133	broad.mit.edu	37	2	210557723	210557723	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8	5599	broad.mit.edu	37	10	49632510	49632510	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATK	4145	broad.mit.edu	37	19	3781677	3781677	+	Intron	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATK	4145	broad.mit.edu	37	19	3781677	3781677	+	Intron	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECOM	2122	broad.mit.edu	37	3	168802634	168802634	+	3'UTR	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECOM	2122	broad.mit.edu	37	3	168802634	168802634	+	3'UTR	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS3	56917	broad.mit.edu	37	19	47920532	47920532	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS3	56917	broad.mit.edu	37	19	47920532	47920532	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141730170	141730170	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141730170	141730170	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIOS	54468	broad.mit.edu	37	7	7629038	7629038	+	Missense_Mutation	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIOS	54468	broad.mit.edu	37	7	7629038	7629038	+	Missense_Mutation	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT3	4300	broad.mit.edu	37	9	20354921	20354921	+	Intron	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT3	4300	broad.mit.edu	37	9	20354921	20354921	+	Intron	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMEL1	79258	broad.mit.edu	37	1	2537763	2537763	+	Nonsense_Mutation	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMEL1	79258	broad.mit.edu	37	1	2537763	2537763	+	Nonsense_Mutation	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP3	4314	broad.mit.edu	37	11	102709383	102709383	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP3	4314	broad.mit.edu	37	11	102709383	102709383	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOGAT2	80168	broad.mit.edu	37	11	75431194	75431194	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOGAT2	80168	broad.mit.edu	37	11	75431194	75431194	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH4	4438	broad.mit.edu	37	1	76345780	76345780	+	Missense_Mutation	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH4	4438	broad.mit.edu	37	1	76345780	76345780	+	Missense_Mutation	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSI2	124540	broad.mit.edu	37	17	55478805	55478805	+	Silent	SNP	A	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSI2	124540	broad.mit.edu	37	17	55478805	55478805	+	Silent	SNP	A	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR14	64419	broad.mit.edu	37	3	9726311	9726311	+	Missense_Mutation	SNP	G	T	T	rs121434509		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR14	64419	broad.mit.edu	37	3	9726311	9726311	+	Missense_Mutation	SNP	G	T	T	rs121434509		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100686537	100686537	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100686537	100686537	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC6	4588	broad.mit.edu	37	11	1027368	1027368	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBPAP	84073	broad.mit.edu	37	17	48603140	48603140	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBPAP	84073	broad.mit.edu	37	17	48603140	48603140	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10535949	10535949	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10535949	10535949	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL3	4634	broad.mit.edu	37	3	46900948	46900948	+	Intron	SNP	G	A	A	rs34269239		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL3	4634	broad.mit.edu	37	3	46900948	46900948	+	Intron	SNP	G	A	A	rs34269239		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26164868	26164868	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26164868	26164868	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128317362	128317362	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128317362	128317362	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45059372	45059372	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45059372	45059372	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEUROD4	58158	broad.mit.edu	37	12	55421051	55421051	+	Silent	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEUROD4	58158	broad.mit.edu	37	12	55421051	55421051	+	Silent	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	22148410	22148410	+	5'Flank	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	22148410	22148410	+	5'Flank	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29683811	29683811	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204955154	204955154	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204955154	204955154	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFU1	27247	broad.mit.edu	37	2	69627736	69627736	+	Intron	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFU1	27247	broad.mit.edu	37	2	69627736	69627736	+	Intron	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGFRAP1	27018	broad.mit.edu	37	X	102632569	102632569	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGFRAP1	27018	broad.mit.edu	37	X	102632569	102632569	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN4	128414	broad.mit.edu	37	20	61873771	61873771	+	Intron	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN4	128414	broad.mit.edu	37	20	61873771	61873771	+	Intron	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKTR	4820	broad.mit.edu	37	3	42674246	42674246	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKTR	4820	broad.mit.edu	37	3	42674246	42674246	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1AP	9722	broad.mit.edu	37	1	162326617	162326617	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1AP	9722	broad.mit.edu	37	1	162326617	162326617	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOVA2	4858	broad.mit.edu	37	19	46444210	46444211	+	Intron	DNP	GG	TT	TT			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPIP	9284	broad.mit.edu	37	16	15026684	15026684	+	Splice_Site	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPIP	9284	broad.mit.edu	37	16	15026684	15026684	+	Splice_Site	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NQO1	1728	broad.mit.edu	37	16	69752194	69752194	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NQO1	1728	broad.mit.edu	37	16	69752194	69752194	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107800774	107800774	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107824775	107824775	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107800774	107800774	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107824775	107824775	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP155	9631	broad.mit.edu	37	5	37328575	37328575	+	Intron	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP155	9631	broad.mit.edu	37	5	37328575	37328575	+	Intron	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF2	4957	broad.mit.edu	37	9	131243982	131243982	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF2	4957	broad.mit.edu	37	9	131243982	131243982	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPRL1	4987	broad.mit.edu	37	20	62729693	62729693	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPRL1	4987	broad.mit.edu	37	20	62729693	62729693	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1J2	26740	broad.mit.edu	37	9	125273566	125273566	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1J2	26740	broad.mit.edu	37	9	125273566	125273566	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1J2	26740	broad.mit.edu	37	9	125274082	125274082	+	3'UTR	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248138758	248138758	+	Intron	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248166365	248166365	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248138758	248138758	+	Intron	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248166365	248166365	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M3	127062	broad.mit.edu	37	1	248366864	248366864	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M3	127062	broad.mit.edu	37	1	248366864	248366864	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M4	26245	broad.mit.edu	37	1	248402835	248402835	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M4	26245	broad.mit.edu	37	1	248402835	248402835	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4M1	441670	broad.mit.edu	37	14	20248934	20248934	+	Silent	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T2	219464	broad.mit.edu	37	11	56000426	56000426	+	Missense_Mutation	SNP	A	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T2	219464	broad.mit.edu	37	11	56000426	56000426	+	Missense_Mutation	SNP	A	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C2	341416	broad.mit.edu	37	12	55846592	55846592	+	Missense_Mutation	SNP	C	T	T	rs141026850		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7G1	125962	broad.mit.edu	37	19	9226302	9226302	+	Silent	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7G1	125962	broad.mit.edu	37	19	9226302	9226302	+	Silent	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8D4	338662	broad.mit.edu	37	11	123777122	123777122	+	5'Flank	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8D4	338662	broad.mit.edu	37	11	123777122	123777122	+	5'Flank	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29648170	29648170	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29648170	29648170	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176671714	176671714	+	Intron	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176671714	176671714	+	Intron	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAR4	347745	broad.mit.edu	37	15	25448489	25448489	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAR4	347745	broad.mit.edu	37	15	25448489	25448489	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARM1	25849	broad.mit.edu	37	4	75937931	75937931	+	Missense_Mutation	SNP	G	A	A	rs34305542		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARM1	25849	broad.mit.edu	37	4	75937931	75937931	+	Missense_Mutation	SNP	G	A	A	rs34305542		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARVA	55742	broad.mit.edu	37	11	12539189	12539190	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARVA	55742	broad.mit.edu	37	11	12539189	12539190	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91090841	91090841	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91090841	91090841	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH19	57526	broad.mit.edu	37	X	99663168	99663168	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH19	57526	broad.mit.edu	37	X	99663168	99663168	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA5	56143	broad.mit.edu	37	5	140203586	140203586	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA5	56143	broad.mit.edu	37	5	140203586	140203586	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA8	56140	broad.mit.edu	37	5	140220966	140220966	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA8	56140	broad.mit.edu	37	5	140220966	140220966	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB11	56125	broad.mit.edu	37	5	140581504	140581504	+	Silent	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB18	54660	broad.mit.edu	37	5	140615910	140615910	+	Missense_Mutation	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB18	54660	broad.mit.edu	37	5	140615910	140615910	+	Missense_Mutation	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCMTD1	115294	broad.mit.edu	37	8	52732893	52732894	+	3'UTR	INS	-	C	C	rs138060787	by1000genomes	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK6	5046	broad.mit.edu	37	15	101906498	101906498	+	Missense_Mutation	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK6	5046	broad.mit.edu	37	15	101906498	101906498	+	Missense_Mutation	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1B	5153	broad.mit.edu	37	12	54967437	54967437	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1B	5153	broad.mit.edu	37	12	54967437	54967437	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	145074916	145074916	+	3'UTR	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDXDC2	283970	broad.mit.edu	37	16	70012166	70012166	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDXDC2	283970	broad.mit.edu	37	16	70012166	70012166	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX1	5189	broad.mit.edu	37	7	92147358	92147358	+	Splice_Site	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX1	5189	broad.mit.edu	37	7	92147358	92147358	+	Splice_Site	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKP	5214	broad.mit.edu	37	10	3143712	3143712	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKP	5214	broad.mit.edu	37	10	3143712	3143712	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20	51230	broad.mit.edu	37	20	34519298	34519298	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20	51230	broad.mit.edu	37	20	34519298	34519298	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIPSL	266971	broad.mit.edu	37	10	95720326	95720326	+	Silent	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIPSL	266971	broad.mit.edu	37	10	95720326	95720326	+	Silent	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110397739	110397739	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110397739	110397739	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2R1	22925	broad.mit.edu	37	2	160832630	160832630	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2R1	22925	broad.mit.edu	37	2	160832630	160832630	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	95995657	95995657	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	96025355	96025355	+	Intron	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	95995657	95995657	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	96025355	96025355	+	Intron	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131936441	131936441	+	Intron	SNP	T	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131949243	131949243	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA2	5362	broad.mit.edu	37	1	208206914	208206914	+	Intron	SNP	T	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS1	5378	broad.mit.edu	37	2	190708892	190708892	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS1	5378	broad.mit.edu	37	2	190708892	190708892	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2CL	441194	broad.mit.edu	37	7	6771673	6771673	+	Intron	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA8	50640	broad.mit.edu	37	7	108119758	108119758	+	Silent	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA8	50640	broad.mit.edu	37	7	108119758	108119758	+	Silent	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84600895	84600895	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84600895	84600895	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPHLN1	51535	broad.mit.edu	37	12	42840506	42840506	+	3'UTR	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPHLN1	51535	broad.mit.edu	37	12	42840506	42840506	+	3'UTR	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1D	8493	broad.mit.edu	37	17	58678193	58678193	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12C	54776	broad.mit.edu	37	19	55603623	55603623	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF1	65121	broad.mit.edu	37	1	12854181	12854181	+	Silent	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREP	5550	broad.mit.edu	37	6	105781267	105781267	+	Missense_Mutation	SNP	C	A	A	rs144257084		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREP	5550	broad.mit.edu	37	6	105781267	105781267	+	Missense_Mutation	SNP	C	A	A	rs144257084		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	68965476	68965476	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	68965476	68965476	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROKR2	128674	broad.mit.edu	37	20	5283389	5283389	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROKR2	128674	broad.mit.edu	37	20	5283389	5283389	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG7	5676	broad.mit.edu	37	19	43439665	43439665	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD7	5713	broad.mit.edu	37	16	74339302	74339302	+	Missense_Mutation	SNP	G	A	A	rs115842956	by1000genomes	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD7	5713	broad.mit.edu	37	16	74339302	74339302	+	Missense_Mutation	SNP	G	A	A	rs115842956	by1000genomes	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN18	26469	broad.mit.edu	37	2	131130809	131130809	+	3'UTR	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN18	26469	broad.mit.edu	37	2	131130809	131130809	+	3'UTR	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157926709	157926709	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	158109655	158109655	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157926709	157926709	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	158109655	158109655	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29637339	29637339	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29637339	29637339	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUS7L	83448	broad.mit.edu	37	12	44142454	44142454	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUS7L	83448	broad.mit.edu	37	12	44142454	44142454	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QPCTL	54814	broad.mit.edu	37	19	46196733	46196733	+	Silent	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QPCTL	54814	broad.mit.edu	37	19	46196733	46196733	+	Silent	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB13	5872	broad.mit.edu	37	1	153957266	153957266	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB13	5872	broad.mit.edu	37	1	153957266	153957266	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3C	115827	broad.mit.edu	37	5	58147149	58147149	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3C	115827	broad.mit.edu	37	5	58147149	58147149	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD21	5885	broad.mit.edu	37	8	117866438	117866438	+	Intron	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD21	5885	broad.mit.edu	37	8	117866438	117866438	+	Intron	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAE1	8480	broad.mit.edu	37	20	55942169	55942169	+	Intron	DEL	A	-	-			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF1	2889	broad.mit.edu	37	9	134505586	134505586	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF1	2889	broad.mit.edu	37	9	134505586	134505586	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103275853	103275853	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103275853	103275853	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RERGL	79785	broad.mit.edu	37	12	18234433	18234433	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RERGL	79785	broad.mit.edu	37	12	18234433	18234433	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117248123	117248123	+	Intron	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117248123	117248123	+	Intron	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS21	431704	broad.mit.edu	37	1	192312052	192312052	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS21	431704	broad.mit.edu	37	1	192312052	192312052	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHAG	6005	broad.mit.edu	37	6	49582478	49582478	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHAG	6005	broad.mit.edu	37	6	49582478	49582478	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130926814	130926814	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130926814	130926814	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77629248	77629248	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77629248	77629248	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237664020	237664020	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237664020	237664020	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34094349	34094349	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAG	6295	broad.mit.edu	37	2	234247306	234247306	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAG	6295	broad.mit.edu	37	2	234247306	234247306	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMSN1	64092	broad.mit.edu	37	21	15872985	15872985	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAND3	114821	broad.mit.edu	37	6	28541214	28541214	+	Missense_Mutation	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAND3	114821	broad.mit.edu	37	6	28541214	28541214	+	Missense_Mutation	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SECISBP2	79048	broad.mit.edu	37	9	91949687	91949687	+	Intron	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SECISBP2	79048	broad.mit.edu	37	9	91949687	91949687	+	Intron	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84727327	84727328	+	Intron	DNP	GA	CT	CT			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84727327	84727328	+	Intron	DNP	GA	CT	CT			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4C	54910	broad.mit.edu	37	2	97533413	97533413	+	Intron	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4C	54910	broad.mit.edu	37	2	97533413	97533413	+	Intron	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT14	346288	broad.mit.edu	37	7	55902059	55902059	+	Intron	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT14	346288	broad.mit.edu	37	7	55902059	55902059	+	Intron	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61323314	61323314	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61323314	61323314	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB7	8710	broad.mit.edu	37	18	61459588	61459588	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB7	8710	broad.mit.edu	37	18	61459588	61459588	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETX	23064	broad.mit.edu	37	9	135224674	135224674	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETX	23064	broad.mit.edu	37	9	135224674	135224674	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK1	6446	broad.mit.edu	37	6	134638606	134638606	+	5'UTR	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK1	6446	broad.mit.edu	37	6	134638606	134638606	+	5'UTR	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D2A	9047	broad.mit.edu	37	1	156784941	156784941	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D2A	9047	broad.mit.edu	37	1	156784941	156784941	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3KBP1	30011	broad.mit.edu	37	X	19559943	19559943	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3KBP1	30011	broad.mit.edu	37	X	19559943	19559943	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1	6494	broad.mit.edu	37	11	65417590	65417599	+	Intron	DEL	GATCCCTTTG	-	-			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1	6494	broad.mit.edu	37	11	65417590	65417599	+	Intron	DEL	GATCCCTTTG	-	-			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKIV2L	6499	broad.mit.edu	37	6	31935558	31935558	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKIV2L	6499	broad.mit.edu	37	6	31935558	31935558	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A1	6563	broad.mit.edu	37	18	43314471	43314471	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A1	6563	broad.mit.edu	37	18	43314471	43314471	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A6	57084	broad.mit.edu	37	11	22397550	22397550	+	Silent	SNP	G	T	T	rs143233199	byFrequency;by1000genomes	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A6	57084	broad.mit.edu	37	11	22397550	22397550	+	Silent	SNP	G	T	T	rs143233199	byFrequency;by1000genomes	TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC23A2	9962	broad.mit.edu	37	20	4840122	4840122	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC23A2	9962	broad.mit.edu	37	20	4840122	4840122	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A4	5172	broad.mit.edu	37	7	107303519	107303519	+	Intron	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118598587	118598587	+	Intron	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118598587	118598587	+	Intron	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168199735	168199735	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168199735	168199735	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC1B	27127	broad.mit.edu	37	22	45758883	45758883	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC1B	27127	broad.mit.edu	37	22	45758883	45758883	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC2	64094	broad.mit.edu	37	6	168947573	168947573	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC2	64094	broad.mit.edu	37	6	168947573	168947573	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51664733	51664733	+	Intron	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51664733	51664733	+	Intron	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX13	23161	broad.mit.edu	37	7	17838743	17838743	+	Missense_Mutation	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX13	23161	broad.mit.edu	37	7	17838743	17838743	+	Missense_Mutation	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106907469	106907469	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106907469	106907469	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118596736	118596736	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118596736	118596736	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA5	166378	broad.mit.edu	37	4	123848935	123848935	+	Intron	SNP	T	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA5	166378	broad.mit.edu	37	4	123848935	123848935	+	Intron	SNP	T	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPG7	6687	broad.mit.edu	37	16	89621029	89621029	+	Intron	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SS18	6760	broad.mit.edu	37	18	23598245	23598245	+	3'UTR	DEL	G	-	-			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SS18	6760	broad.mit.edu	37	18	23598245	23598245	+	3'UTR	DEL	G	-	-			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX7	280658	broad.mit.edu	37	X	52686387	52686387	+	5'Flank	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX7	280658	broad.mit.edu	37	X	52686387	52686387	+	5'Flank	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA5	29906	broad.mit.edu	37	18	44268816	44268816	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA5	29906	broad.mit.edu	37	18	44268816	44268816	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2C	22987	broad.mit.edu	37	5	75491012	75491012	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2C	22987	broad.mit.edu	37	5	75491012	75491012	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT3	84258	broad.mit.edu	37	19	51133135	51133135	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT3	84258	broad.mit.edu	37	19	51133135	51133135	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL4	94121	broad.mit.edu	37	X	99955913	99955913	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL4	94121	broad.mit.edu	37	X	99955913	99955913	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF9B	51616	broad.mit.edu	37	X	77395088	77395088	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF9B	51616	broad.mit.edu	37	X	77395088	77395088	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D9B	23061	broad.mit.edu	37	5	179301942	179301942	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D9B	23061	broad.mit.edu	37	5	179301942	179301942	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX10	347853	broad.mit.edu	37	11	67402447	67402447	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX10	347853	broad.mit.edu	37	11	67402447	67402447	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDG	6996	broad.mit.edu	37	12	104373742	104373742	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDG	6996	broad.mit.edu	37	12	104373742	104373742	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX101	83639	broad.mit.edu	37	19	43920644	43920644	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX101	83639	broad.mit.edu	37	19	43920644	43920644	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	134031860	134031860	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	134125651	134125651	+	Intron	DEL	T	-	-	rs72433148		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	134031860	134031860	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS3	7059	broad.mit.edu	37	1	155170407	155170407	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS3	7059	broad.mit.edu	37	1	155170407	155170407	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120474988	120474988	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120474988	120474988	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM9SF2	9375	broad.mit.edu	37	13	100206731	100206731	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM9SF2	9375	broad.mit.edu	37	13	100206731	100206731	+	Intron	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM135	65084	broad.mit.edu	37	11	87013423	87013423	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM135	65084	broad.mit.edu	37	11	87013423	87013423	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74958006	74958006	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74958006	74958006	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNT3	7140	broad.mit.edu	37	11	1955213	1955213	+	Missense_Mutation	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNT3	7140	broad.mit.edu	37	11	1955213	1955213	+	Missense_Mutation	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175362997	175362997	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175362997	175362997	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218677204	218677204	+	Intron	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218677204	218677204	+	Intron	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOR1B	27348	broad.mit.edu	37	9	132571440	132571440	+	Intron	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOR1B	27348	broad.mit.edu	37	9	132571440	132571440	+	Intron	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7579358	7579358	+	Missense_Mutation	SNP	C	A	A	rs11540654		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7579358	7579358	+	Missense_Mutation	SNP	C	A	A	rs11540654		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPRXL	348825	broad.mit.edu	37	3	13976888	13976888	+	5'Flank	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPRXL	348825	broad.mit.edu	37	3	13976888	13976888	+	5'Flank	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3IP3	80342	broad.mit.edu	37	1	209936616	209936616	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3IP3	80342	broad.mit.edu	37	1	209936616	209936616	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAFD1	10906	broad.mit.edu	37	12	112579051	112579051	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAFD1	10906	broad.mit.edu	37	12	112579051	112579051	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM22	10346	broad.mit.edu	37	11	5730336	5730336	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM22	10346	broad.mit.edu	37	11	5730336	5730336	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55035063	55035063	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55035063	55035063	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML1	339976	broad.mit.edu	37	4	189068534	189068534	+	3'UTR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML1	339976	broad.mit.edu	37	4	189068534	189068534	+	3'UTR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98498314	98498314	+	Frame_Shift_Del	DEL	T	-	-			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRYX3	136541	broad.mit.edu	37	7	141955210	141955210	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRYX3	136541	broad.mit.edu	37	7	141955210	141955210	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA10	80705	broad.mit.edu	37	2	99636892	99636892	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA10	80705	broad.mit.edu	37	2	99636894	99636894	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA10	80705	broad.mit.edu	37	2	99636892	99636892	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA10	80705	broad.mit.edu	37	2	99636894	99636894	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSNARE1	203062	broad.mit.edu	37	8	143427140	143427140	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSNARE1	203062	broad.mit.edu	37	8	143427140	143427140	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179638872	179638872	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179641023	179641023	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179638872	179638872	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179641023	179641023	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP1	7287	broad.mit.edu	37	6	35466187	35466187	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP1	7287	broad.mit.edu	37	6	35466187	35466187	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHMK1	127933	broad.mit.edu	37	1	162482391	162482391	+	Intron	SNP	T	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHMK1	127933	broad.mit.edu	37	1	162482391	162482391	+	Intron	SNP	T	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96090609	96090609	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96090609	96090609	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35624454	35624454	+	Missense_Mutation	SNP	G	A	A	rs112851152		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35624454	35624454	+	Missense_Mutation	SNP	G	A	A	rs112851152		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126202291	126202291	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126202291	126202291	+	Missense_Mutation	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP9X	8239	broad.mit.edu	37	X	41029762	41029762	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP9X	8239	broad.mit.edu	37	X	41029762	41029762	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	116660797	116660798	+	IGR	DNP	GG	TT	TT			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38982199	38982199	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42400410	42400410	+	IGR	DEL	C	-	-	rs74186261		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56507695	56507695	+	IGR	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38595921	38595921	+	IGR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	77054615	77054615	+	IGR	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	60962709	60962709	+	IGR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20444736	20444736	+	IGR	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31746216	31746216	+	IGR	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	12031336	12031336	+	IGR	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32883419	32883419	+	IGR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33391493	33391493	+	IGR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33503801	33503801	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33629928	33629928	+	IGR	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	48532277	48532277	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	59123005	59123005	+	IGR	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20418508	20418508	+	IGR	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20493288	20493288	+	IGR	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	41901801	41901801	+	IGR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20047922	20047922	+	IGR	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	27738491	27738491	+	IGR	DEL	T	-	-			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157043350	157043350	+	IGR	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	168338821	168338821	+	IGR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	168420245	168420245	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	227680840	227680840	+	IGR	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	31960769	31960769	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10623202	10623202	+	IGR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14899351	14899351	+	IGR	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	28515746	28515746	+	IGR	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	38075818	38075818	+	IGR	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	139659655	139659655	+	IGR	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	204500050	204500050	+	IGR	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	33862157	33862157	+	IGR	SNP	G	T	T	rs112949435		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	10980195	10980195	+	IGR	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	146994611	146994611	+	IGR	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163719805	163719805	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	166011689	166011689	+	IGR	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	46184809	46184809	+	IGR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	163111041	163111041	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	55134863	55134863	+	IGR	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75672549	75672549	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57841406	57841406	+	IGR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58778285	58778285	+	IGR	DEL	C	-	-			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	54724133	54724133	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57245354	57245354	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61968770	61968770	+	IGR	DEL	G	-	-	rs61713499		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30800426	30800426	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69894232	69894232	+	IGR	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84674826	84674826	+	IGR	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	135378918	135378918	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65718207	65718207	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74547472	74547472	+	IGR	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	85104679	85104679	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	85340547	85340548	+	IGR	INS	-	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	116660797	116660798	+	IGR	DNP	GG	TT	TT			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38982199	38982199	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56507695	56507695	+	IGR	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38595921	38595921	+	IGR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	4208615	4208615	+	IGR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	77054615	77054615	+	IGR	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20444736	20444736	+	IGR	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31746216	31746216	+	IGR	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	12031336	12031336	+	IGR	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32883419	32883419	+	IGR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33391493	33391493	+	IGR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33503801	33503801	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33629928	33629928	+	IGR	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	48532277	48532277	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	59123005	59123005	+	IGR	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20418508	20418508	+	IGR	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20493288	20493288	+	IGR	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	41901801	41901801	+	IGR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20047922	20047922	+	IGR	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157043350	157043350	+	IGR	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	168338821	168338821	+	IGR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	168420245	168420245	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	227680840	227680840	+	IGR	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	31960769	31960769	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29449677	29449678	+	IGR	DEL	CC	-	-			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	4040380	4040380	+	IGR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10623202	10623202	+	IGR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14899351	14899351	+	IGR	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	28515746	28515746	+	IGR	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	38075818	38075818	+	IGR	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	139659655	139659655	+	IGR	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	204500050	204500050	+	IGR	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	33862157	33862157	+	IGR	SNP	G	T	T	rs112949435		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	10980195	10980195	+	IGR	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	146994611	146994611	+	IGR	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163719805	163719805	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	166011689	166011689	+	IGR	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	46184809	46184809	+	IGR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9704643	9704643	+	IGR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	163111041	163111041	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29882871	29882871	+	IGR	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	55134863	55134863	+	IGR	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75672549	75672549	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57841406	57841406	+	IGR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	126935612	126935612	+	IGR	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	54724133	54724133	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57245354	57245354	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61968770	61968770	+	IGR	DEL	G	-	-	rs61713499		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30800426	30800426	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	67293898	67293898	+	IGR	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69894232	69894232	+	IGR	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84674826	84674826	+	IGR	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	135378918	135378918	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65718207	65718207	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74547472	74547472	+	IGR	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	85104679	85104679	+	IGR	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	85340547	85340548	+	IGR	INS	-	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL1	51442	broad.mit.edu	37	X	135631167	135631167	+	Missense_Mutation	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL1	51442	broad.mit.edu	37	X	135631167	135631167	+	Missense_Mutation	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS8	23355	broad.mit.edu	37	3	184544101	184544101	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS8	23355	broad.mit.edu	37	3	184544101	184544101	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSIG4	11326	broad.mit.edu	37	X	65252505	65252505	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSIG4	11326	broad.mit.edu	37	X	65252505	65252505	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98744867	98744867	+	Missense_Mutation	SNP	A	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98744867	98744867	+	Missense_Mutation	SNP	A	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	71036410	71036410	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	71036410	71036410	+	Intron	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR3	10885	broad.mit.edu	37	1	118494942	118494942	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR3	10885	broad.mit.edu	37	1	118494942	118494942	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR5	11091	broad.mit.edu	37	9	137004980	137004980	+	5'UTR	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR5	11091	broad.mit.edu	37	9	137004980	137004980	+	5'UTR	SNP	G	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD1	23302	broad.mit.edu	37	17	6021387	6021387	+	Silent	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD1	23302	broad.mit.edu	37	17	6021387	6021387	+	Silent	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H11A	9877	broad.mit.edu	37	1	203816897	203816897	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H11A	9877	broad.mit.edu	37	1	203816897	203816897	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDBF2	57683	broad.mit.edu	37	2	207170978	207170978	+	Missense_Mutation	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDBF2	57683	broad.mit.edu	37	2	207170978	207170978	+	Missense_Mutation	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE9	9372	broad.mit.edu	37	1	52627915	52627915	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE9	9372	broad.mit.edu	37	1	52627915	52627915	+	Intron	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147106605	147106605	+	3'UTR	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147106605	147106605	+	3'UTR	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF226	7769	broad.mit.edu	37	19	44680542	44680542	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF226	7769	broad.mit.edu	37	19	44680542	44680542	+	Missense_Mutation	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF271	10778	broad.mit.edu	37	18	32886416	32886416	+	5'UTR	SNP	A	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF474	133923	broad.mit.edu	37	5	121487887	121487887	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF474	133923	broad.mit.edu	37	5	121487887	121487887	+	Missense_Mutation	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF557	79230	broad.mit.edu	37	19	7075037	7075037	+	5'UTR	DEL	G	-	-			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF557	79230	broad.mit.edu	37	19	7075037	7075037	+	5'UTR	DEL	G	-	-			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF630	57232	broad.mit.edu	37	X	47919949	47919949	+	Intron	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF630	57232	broad.mit.edu	37	X	47919949	47919949	+	Intron	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF678	339500	broad.mit.edu	37	1	227843217	227843217	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF678	339500	broad.mit.edu	37	1	227843217	227843217	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF720	124411	broad.mit.edu	37	16	31734594	31734594	+	Missense_Mutation	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF720	124411	broad.mit.edu	37	16	31734594	31734594	+	Missense_Mutation	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF79	7633	broad.mit.edu	37	9	130198191	130198191	+	Silent	SNP	T	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF79	7633	broad.mit.edu	37	9	130198191	130198191	+	Silent	SNP	T	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22940301	22940301	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22940301	22940301	+	Missense_Mutation	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN5B	342933	broad.mit.edu	37	19	56703952	56703952	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN5B	342933	broad.mit.edu	37	19	56703952	56703952	+	Intron	SNP	A	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZEF1	23140	broad.mit.edu	37	17	3984731	3984731	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZEF1	23140	broad.mit.edu	37	17	3984731	3984731	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	134660763	134660763	+	Silent	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	27577698	27577698	+	RNA	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102294652	102294652	+	Silent	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20689015	20689015	+	5'Flank	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89326709	89326709	+	RNA	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	102016193	102016193	+	Intron	SNP	T	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142008863	142008863	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142364503	142364503	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142510501	142510501	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38407606	38407606	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	134660763	134660763	+	Silent	SNP	T	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	27577698	27577698	+	RNA	SNP	G	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20689015	20689015	+	5'Flank	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89326709	89326709	+	RNA	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142008863	142008863	+	Intron	SNP	C	G	G			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142364503	142364503	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142510501	142510501	+	Silent	SNP	C	A	A			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38407606	38407606	+	Intron	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90744703	90744703	+	Silent	SNP	C	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
