Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AADACL2	344752	broad.mit.edu	37	3	151475041	151475041	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA17P	650655	broad.mit.edu	37	16	2436303	2436303	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20685242	20685242	+	5'Flank	SNP	A	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC4	10257	broad.mit.edu	37	13	95735399	95735399	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	22048279	22048279	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAA2	10449	broad.mit.edu	37	18	47329299	47329299	+	Intron	SNP	T	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACADM	34	broad.mit.edu	37	1	76199395	76199395	+	Intron	SNP	G	C	C	rs145811227	by1000genomes	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACADVL	37	broad.mit.edu	37	17	7125019	7125019	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACER3	55331	broad.mit.edu	37	11	76637694	76637694	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACE	1636	broad.mit.edu	37	17	61574336	61574336	+	Silent	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACLY	47	broad.mit.edu	37	17	40062974	40062974	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL1	2180	broad.mit.edu	37	4	185697770	185697770	+	Silent	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM1	116285	broad.mit.edu	37	16	20638525	20638525	+	Silent	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20494714	20494714	+	Intron	DEL	A	-	-	rs71377660		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSS2	55902	broad.mit.edu	37	20	33508916	33508916	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTR6	64431	broad.mit.edu	37	12	100606231	100606231	+	Silent	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVR1	90	broad.mit.edu	37	2	158626930	158626930	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106621885	106621885	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33684050	33684050	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33881537	33881537	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43846309	43846309	+	Intron	SNP	T	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF1	4299	broad.mit.edu	37	4	88015984	88015984	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGER	177	broad.mit.edu	37	6	32150196	32150196	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGER	177	broad.mit.edu	37	6	32150773	32150773	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGER	177	broad.mit.edu	37	6	32150922	32150922	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105413013	105413013	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105413043	105413043	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62292702	62292702	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1	202	broad.mit.edu	37	6	106968226	106968226	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM2	9447	broad.mit.edu	37	1	159042886	159042886	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91712592	91712592	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKT2	208	broad.mit.edu	37	19	40746077	40746077	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALB	213	broad.mit.edu	37	4	74280743	74280743	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH2	217	broad.mit.edu	37	12	112220792	112220792	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41552591	41552591	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFN1	162282	broad.mit.edu	37	17	54450167	54450167	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD34A	284615	broad.mit.edu	37	1	145473380	145473380	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA2P3	305	broad.mit.edu	37	10	66586363	66586363	+	RNA	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36656065	36656065	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APAF1	317	broad.mit.edu	37	12	99119407	99119407	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APPBP2	10513	broad.mit.edu	37	17	58571968	58571968	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP26	23092	broad.mit.edu	37	5	142292638	142292638	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP28	79822	broad.mit.edu	37	18	6889985	6889985	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP28	79822	broad.mit.edu	37	18	6890048	6890048	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP31	57514	broad.mit.edu	37	3	119134031	119134031	+	Silent	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF10L	55160	broad.mit.edu	37	1	18021631	18021631	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF38	54848	broad.mit.edu	37	4	106534678	106534678	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPC1A	10552	broad.mit.edu	37	7	98957388	98957388	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPC3	10094	broad.mit.edu	37	12	110874419	110874419	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35785939	35785939	+	Intron	SNP	A	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSG	22901	broad.mit.edu	37	17	66364735	66364735	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATCAY	85300	broad.mit.edu	37	19	3920811	3920811	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF6	22926	broad.mit.edu	37	1	161735996	161735996	+	5'Flank	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF6	22926	broad.mit.edu	37	1	161736217	161736217	+	Missense_Mutation	SNP	C	G	G	rs149825732		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108159736	108159736	+	Missense_Mutation	SNP	T	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11A	23250	broad.mit.edu	37	13	113514624	113514624	+	Silent	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A4	84239	broad.mit.edu	37	3	193159247	193159247	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1B3	483	broad.mit.edu	37	3	141595803	141595803	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1A	523	broad.mit.edu	37	3	113528247	113528247	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVIL	10677	broad.mit.edu	37	12	58196975	58196975	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVL9	23080	broad.mit.edu	37	7	32801145	32801145	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AZI2	64343	broad.mit.edu	37	3	28379446	28379446	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALT5	9334	broad.mit.edu	37	20	48260221	48260221	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2A	11176	broad.mit.edu	37	12	57009066	57009066	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33644702	33644702	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCLAF1	9774	broad.mit.edu	37	6	136588435	136588435	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEST2	54831	broad.mit.edu	37	19	12864192	12864192	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC8	112401	broad.mit.edu	37	19	53793072	53793072	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNC2	54796	broad.mit.edu	37	9	16437286	16437286	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOD1L	259282	broad.mit.edu	37	4	13605037	13605037	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPHL	670	broad.mit.edu	37	6	3119649	3119649	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCA2	675	broad.mit.edu	37	13	32913027	32913027	+	Missense_Mutation	SNP	G	A	A	rs80358685		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD8	10902	broad.mit.edu	37	5	137500375	137500375	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD8	10902	broad.mit.edu	37	5	137504142	137504142	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BST1	683	broad.mit.edu	37	4	15717004	15717004	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTG4	54766	broad.mit.edu	37	11	111368194	111368194	+	Intron	SNP	A	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BUB1B	701	broad.mit.edu	37	15	40505533	40505533	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf83	790955	broad.mit.edu	37	11	62439411	62439411	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf94	143678	broad.mit.edu	37	11	45928090	45928090	+	3'UTR	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf135	64430	broad.mit.edu	37	14	60574884	60574884	+	Intron	SNP	A	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf53	78995	broad.mit.edu	37	17	42225308	42225308	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf67	339210	broad.mit.edu	37	17	54892156	54892156	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf70	80233	broad.mit.edu	37	17	79514605	79514605	+	Silent	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf200	253868	broad.mit.edu	37	20	61143770	61143770	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf9	23313	broad.mit.edu	37	22	45601975	45601975	+	Intron	SNP	T	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf18	54978	broad.mit.edu	37	2	26998291	26998291	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf3	6936	broad.mit.edu	37	2	75929268	75929268	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf14	84273	broad.mit.edu	37	4	57839899	57839899	+	Intron	SNP	T	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf41	60684	broad.mit.edu	37	4	184618734	184618734	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf36	57002	broad.mit.edu	37	7	39610115	39610115	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABP5	56344	broad.mit.edu	37	19	48544822	48544822	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181763974	181763974	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181763983	181763983	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201042471	201042471	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMTA2	23125	broad.mit.edu	37	17	4883116	4883116	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASD1	64921	broad.mit.edu	37	7	94146906	94146906	+	Silent	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP9	842	broad.mit.edu	37	1	15819510	15819510	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC111	201973	broad.mit.edu	37	4	185593715	185593715	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC141	285025	broad.mit.edu	37	2	179702564	179702564	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC45	90799	broad.mit.edu	37	17	62533820	62533820	+	Silent	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC52	152185	broad.mit.edu	37	3	113225439	113225439	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC64	92558	broad.mit.edu	37	12	120510308	120510308	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT2	10576	broad.mit.edu	37	12	69993722	69993722	+	Silent	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163	9332	broad.mit.edu	37	12	7635027	7635027	+	Intron	SNP	T	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1C	911	broad.mit.edu	37	1	158262686	158262686	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC14A	8556	broad.mit.edu	37	1	100933493	100933493	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42SE1	56882	broad.mit.edu	37	1	151026774	151026774	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	65038648	65038649	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21883591	21883591	+	Intron	DEL	G	-	-			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR2	54825	broad.mit.edu	37	5	176016287	176016287	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK13	8621	broad.mit.edu	37	7	40134077	40134077	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR1	9620	broad.mit.edu	37	22	46931714	46931714	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPBD1	92806	broad.mit.edu	37	16	90038109	90038109	+	Silent	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214802433	214802433	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPJ	55835	broad.mit.edu	37	13	25480067	25480067	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPL	91687	broad.mit.edu	37	1	173780416	173780416	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP164	22897	broad.mit.edu	37	11	117280524	117280524	+	Silent	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50824674	50824674	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHCHD5	84269	broad.mit.edu	37	2	113346493	113346493	+	3'UTR	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD1L	9557	broad.mit.edu	37	1	146727479	146727479	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6166855	6166855	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40122243	40122243	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHI3L1	1116	broad.mit.edu	37	1	203154231	203154231	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNB2	1141	broad.mit.edu	37	1	154548343	154548343	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN7	1186	broad.mit.edu	37	16	1507247	1507247	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN22	53842	broad.mit.edu	37	4	184243388	184243388	+	5'Flank	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLU	1191	broad.mit.edu	37	8	27462598	27462598	+	Silent	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT1	23019	broad.mit.edu	37	16	58619324	58619324	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COCH	1690	broad.mit.edu	37	14	31349863	31349863	+	Silent	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121238940	121238940	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL18A1	80781	broad.mit.edu	37	21	46908346	46908346	+	Silent	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86313300	86313300	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107431041	107431041	+	Intron	SNP	A	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48605555	48605555	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A3	1299	broad.mit.edu	37	20	61454067	61454067	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB3L3	84699	broad.mit.edu	37	19	4171672	4171672	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREM	1390	broad.mit.edu	37	10	35500201	35500201	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRKL	1399	broad.mit.edu	37	22	21288146	21288146	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYGB	1419	broad.mit.edu	37	2	209007437	209007437	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSGALNACT2	55454	broad.mit.edu	37	10	43678736	43678736	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80136694	80136695	+	Intron	DEL	TG	-	-			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	68535136	68535136	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	35988982	35988982	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYBRD1	79901	broad.mit.edu	37	2	172379251	172379251	+	Intron	SNP	A	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP1B1	1545	broad.mit.edu	37	2	38301556	38301556	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C8	1558	broad.mit.edu	37	10	96818250	96818250	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAPP1	27071	broad.mit.edu	37	4	100756627	100756627	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBT	1629	broad.mit.edu	37	1	100696224	100696224	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L1	139170	broad.mit.edu	37	X	125685236	125685236	+	Silent	SNP	T	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L2	340578	broad.mit.edu	37	X	125299513	125299513	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDIT3	1649	broad.mit.edu	37	12	57910715	57910715	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND4B	9909	broad.mit.edu	37	1	153911514	153911514	+	Silent	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC4	120863	broad.mit.edu	37	12	100649949	100649949	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGUOK	1716	broad.mit.edu	37	2	74177856	74177856	+	Silent	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX36	170506	broad.mit.edu	37	3	154001098	154001098	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX9	1660	broad.mit.edu	37	1	182847133	182847133	+	Intron	SNP	A	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKFZP434L187	26082	broad.mit.edu	37	15	30491369	30491369	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP1	9229	broad.mit.edu	37	18	3729134	3729134	+	Splice_Site	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP2	9228	broad.mit.edu	37	8	1617977	1617977	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL1	1657	broad.mit.edu	37	5	118507008	118507008	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124419898	124419898	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124420114	124420114	+	3'UTR	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21923947	21923947	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52396948	52396948	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38917469	38917469	+	Intron	SNP	T	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3B	1789	broad.mit.edu	37	20	31369094	31369094	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTT	1791	broad.mit.edu	37	10	98092434	98092434	+	Intron	SNP	T	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	311897	311897	+	Intron	SNP	G	T	T	rs147381956	by1000genomes	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK9	23348	broad.mit.edu	37	13	99462607	99462607	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOT1L	84444	broad.mit.edu	37	19	2210737	2210737	+	Frame_Shift_Del	DEL	G	-	-			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOT1L	84444	broad.mit.edu	37	19	2222272	2222272	+	Nonsense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPH5	51611	broad.mit.edu	37	1	101487058	101487058	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL3	1809	broad.mit.edu	37	5	146804535	146804535	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTWD2	285605	broad.mit.edu	37	5	118183674	118183674	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUOX2	50506	broad.mit.edu	37	15	45403019	45403019	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95614143	95614143	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	44107532	44107532	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD1	79631	broad.mit.edu	37	15	82431296	82431296	+	Intron	SNP	C	G	G	rs113459195		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD1	79631	broad.mit.edu	37	15	82523149	82523149	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55218936	55218936	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGF	1950	broad.mit.edu	37	4	110914579	110914579	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2B4	8890	broad.mit.edu	37	2	27587541	27587541	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3B	8662	broad.mit.edu	37	7	2403186	2403186	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF5B	9669	broad.mit.edu	37	2	99977860	99977860	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF5B	9669	broad.mit.edu	37	2	99978250	99978250	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF5B	9669	broad.mit.edu	37	2	99980189	99980189	+	Missense_Mutation	SNP	A	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF5B	9669	broad.mit.edu	37	2	99998629	99998629	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37136224	37136224	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMOD1	55531	broad.mit.edu	37	11	107506565	107506565	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML2	24139	broad.mit.edu	37	19	46124837	46124837	+	Silent	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR4P	326342	broad.mit.edu	37	19	6981837	6981837	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120580408	120580408	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4B	54566	broad.mit.edu	37	9	112015721	112015721	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L5	57669	broad.mit.edu	37	2	120900596	120900596	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESX1	80712	broad.mit.edu	37	X	103499568	103499568	+	5'UTR	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT1	23344	broad.mit.edu	37	12	56525364	56525383	+	Intron	DEL	ATGAAGGGGTATGGGGAAGC	-	-			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT3	83850	broad.mit.edu	37	3	138178914	138178914	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC2	55770	broad.mit.edu	37	6	637753	637753	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC6B	23233	broad.mit.edu	37	2	72945355	72945355	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXPH5	23086	broad.mit.edu	37	11	108412521	108412521	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP1	2168	broad.mit.edu	37	2	88427554	88427554	+	Translation_Start_Site	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM116A	201627	broad.mit.edu	37	3	57618940	57618940	+	Intron	SNP	T	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM129B	64855	broad.mit.edu	37	9	130294103	130294103	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135A	57579	broad.mit.edu	37	6	71238217	71238217	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65A	79567	broad.mit.edu	37	16	67578375	67578375	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65C	140876	broad.mit.edu	37	20	49209728	49209728	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM82A2	55177	broad.mit.edu	37	15	41043610	41043610	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83H	286077	broad.mit.edu	37	8	144812586	144812586	+	Missense_Mutation	SNP	A	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCA	2175	broad.mit.edu	37	16	89862360	89862360	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN5	10516	broad.mit.edu	37	14	92343918	92343918	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL3	26224	broad.mit.edu	37	13	77589622	77589622	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL6	26233	broad.mit.edu	37	8	145581359	145581359	+	Silent	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO5	26271	broad.mit.edu	37	6	153296529	153296529	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157765949	157765949	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL4	83417	broad.mit.edu	37	1	157557312	157557312	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	124989637	124989637	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FETUB	26998	broad.mit.edu	37	3	186370114	186370114	+	Silent	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGB	2244	broad.mit.edu	37	4	155491525	155491525	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD2	221472	broad.mit.edu	37	6	36993601	36993601	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIBP	9158	broad.mit.edu	37	11	65652291	65652291	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBPL	63943	broad.mit.edu	37	6	32097038	32097038	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLOT1	10211	broad.mit.edu	37	6	30708997	30708997	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLOT2	2319	broad.mit.edu	37	17	27210261	27210261	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLRT3	23767	broad.mit.edu	37	20	14306198	14306198	+	3'UTR	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN1	342184	broad.mit.edu	37	15	33180500	33180500	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240306964	240306964	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNTA	2339	broad.mit.edu	37	8	42919285	42919285	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLR2	2350	broad.mit.edu	37	11	71927839	71927839	+	5'UTR	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLR2	2350	broad.mit.edu	37	11	71927869	71927869	+	5'UTR	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXK2	3607	broad.mit.edu	37	17	80542037	80542037	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXN1	8456	broad.mit.edu	37	17	26851622	26851622	+	Silent	SNP	C	G	G	rs138510671		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4A	55691	broad.mit.edu	37	10	13782364	13782364	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49191147	49191147	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
G2E3	55632	broad.mit.edu	37	14	31058696	31058696	+	Intron	SNP	T	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
G3BP1	10146	broad.mit.edu	37	5	151173756	151173756	+	Missense_Mutation	SNP	A	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46307713	46307713	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	26793029	26793029	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG2	2566	broad.mit.edu	37	5	161575992	161575992	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT8	26290	broad.mit.edu	37	12	4870202	4870202	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT8	26290	broad.mit.edu	37	12	4881569	4881569	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP7	388646	broad.mit.edu	37	1	89598915	89598915	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCNT3	9245	broad.mit.edu	37	15	59910672	59910672	+	Missense_Mutation	SNP	G	C	C	rs143474619		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF9	2661	broad.mit.edu	37	5	132197487	132197487	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGT8P	645367	broad.mit.edu	37	2	91968695	91968695	+	RNA	SNP	T	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLS2	27165	broad.mit.edu	37	12	56868559	56868559	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAQ	2776	broad.mit.edu	37	9	80430572	80430572	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNB4	59345	broad.mit.edu	37	3	179132738	179132738	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA6L10	647042	broad.mit.edu	37	15	82635114	82635114	+	RNA	SNP	A	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLPH3L	55204	broad.mit.edu	37	1	150620741	150620741	+	3'UTR	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLPH3	64083	broad.mit.edu	37	5	32135777	32135777	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155754959	155754959	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH4	54865	broad.mit.edu	37	1	156566153	156566153	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR124	25960	broad.mit.edu	37	8	37689071	37689071	+	Missense_Mutation	SNP	G	A	A	rs148701575	byFrequency	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC5A	9052	broad.mit.edu	37	12	13065462	13065462	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRIN1	114787	broad.mit.edu	37	5	176025029	176025029	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPS1	2873	broad.mit.edu	37	17	80014187	80014187	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120852826	120852826	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2D	2906	broad.mit.edu	37	19	48908350	48908350	+	Silent	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRLF1	2909	broad.mit.edu	37	19	47422425	47422425	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	34101351	34101351	+	5'UTR	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA3	2940	broad.mit.edu	37	6	52764737	52764737	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTK1	373156	broad.mit.edu	37	7	142960620	142960620	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A3	2982	broad.mit.edu	37	4	156634681	156634681	+	Silent	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSB	2990	broad.mit.edu	37	7	65440961	65440961	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCFC1	3054	broad.mit.edu	37	X	153221008	153221008	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCFC1	3054	broad.mit.edu	37	X	153223608	153223608	+	Silent	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELZ	9931	broad.mit.edu	37	17	65083055	65083055	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC1	8925	broad.mit.edu	37	15	63953892	63953892	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC3	8916	broad.mit.edu	37	4	89607914	89607914	+	Silent	SNP	C	A	A	rs61738481	byFrequency;by1000genomes	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEXA	3073	broad.mit.edu	37	15	72649045	72649045	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29974804	29974804	+	Intron	SNP	A	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29974845	29974845	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMP19	51617	broad.mit.edu	37	5	173473739	173473739	+	5'UTR	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB1	3211	broad.mit.edu	37	17	46607302	46607302	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPR	3250	broad.mit.edu	37	16	72107647	72107647	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA14	3448	broad.mit.edu	37	9	21231577	21231577	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC4	57722	broad.mit.edu	37	15	65676690	65676690	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFL2	147920	broad.mit.edu	37	19	46652280	46652280	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL12RB2	3595	broad.mit.edu	37	1	67833507	67833507	+	Splice_Site	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL16	3603	broad.mit.edu	37	15	81592196	81592196	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL9R	3581	broad.mit.edu	37	X	155232527	155232527	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG1	3617	broad.mit.edu	37	6	76660781	76660781	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBE	83729	broad.mit.edu	37	12	57850041	57850041	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INO80	54617	broad.mit.edu	37	15	41350980	41350980	+	Splice_Site	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSR	3643	broad.mit.edu	37	19	7125477	7125477	+	Silent	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQSEC1	9922	broad.mit.edu	37	3	12961967	12961967	+	Silent	SNP	C	G	G	rs146107147	byFrequency	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQUB	154865	broad.mit.edu	37	7	123101650	123101650	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRF8	3394	broad.mit.edu	37	16	85942710	85942710	+	Missense_Mutation	SNP	G	A	A	rs34712374		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISCU	23479	broad.mit.edu	37	12	108957818	108957818	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD1C	221037	broad.mit.edu	37	10	64944420	64944420	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42139578	42139578	+	Missense_Mutation	SNP	C	T	T	rs145043086		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAT2B	8850	broad.mit.edu	37	3	20189999	20189999	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KATNA1	11104	broad.mit.edu	37	6	149954192	149954192	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA1	3736	broad.mit.edu	37	12	5020578	5020578	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63246421	63246421	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ5	3762	broad.mit.edu	37	11	128781480	128781480	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK2	3776	broad.mit.edu	37	1	215259970	215259970	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM3B	51780	broad.mit.edu	37	5	137760121	137760121	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53254005	53254005	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10602581	10602581	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0753	9851	broad.mit.edu	37	17	6493842	6493842	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1310	55683	broad.mit.edu	37	2	97275266	97275266	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94110088	94110088	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1841	84542	broad.mit.edu	37	2	61298824	61298824	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF17	57576	broad.mit.edu	37	1	20992649	20992649	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF10	7071	broad.mit.edu	37	8	103663208	103663208	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF12	11278	broad.mit.edu	37	13	74387368	74387368	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL5	51088	broad.mit.edu	37	4	39082722	39082722	+	Splice_Site	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK1	3816	broad.mit.edu	37	19	51325133	51325133	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNDC1	85442	broad.mit.edu	37	10	134999869	134999869	+	Silent	SNP	G	T	T	rs35998551	byFrequency;by1000genomes	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT27	342574	broad.mit.edu	37	17	38935927	38935927	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT75	9119	broad.mit.edu	37	12	52826902	52826902	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCMT2	9836	broad.mit.edu	37	15	43620678	43620678	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCMT2	9836	broad.mit.edu	37	15	43622436	43622436	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDOC1	23641	broad.mit.edu	37	X	140270933	140270933	+	Silent	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX6	26468	broad.mit.edu	37	9	124988802	124988802	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN2	10960	broad.mit.edu	37	5	176764569	176764569	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMX1B	4010	broad.mit.edu	37	9	129453345	129453345	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC284441	284441	broad.mit.edu	37	19	20369582	20369582	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440173	440173	broad.mit.edu	37	9	89628124	89628124	+	Intron	SNP	C	T	T	rs35998235		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141609091	141609091	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC42	115353	broad.mit.edu	37	1	54418039	54418039	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN4	164312	broad.mit.edu	37	20	6022399	6022399	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160755639	160755639	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39827209	39827209	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2C1	4123	broad.mit.edu	37	15	75654689	75654689	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MANBA	4126	broad.mit.edu	37	4	103672874	103672874	+	Intron	SNP	T	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K15	389840	broad.mit.edu	37	X	19416229	19416229	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K4	4216	broad.mit.edu	37	6	161470151	161470151	+	Missense_Mutation	SNP	T	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8IP3	23162	broad.mit.edu	37	16	1816175	1816175	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPKAP1	79109	broad.mit.edu	37	9	128434782	128434782	+	Silent	SNP	C	A	A	rs138237151	byFrequency	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATR3	9782	broad.mit.edu	37	5	138661216	138661216	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM9	254394	broad.mit.edu	37	6	119245037	119245037	+	Nonsense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90397931	90397931	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED16	10025	broad.mit.edu	37	19	876967	876967	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICALL1	85377	broad.mit.edu	37	22	38320660	38320660	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIER1	57708	broad.mit.edu	37	1	67442271	67442271	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIER2	54531	broad.mit.edu	37	19	326574	326574	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1302-4	100302130	broad.mit.edu	37	2	208134124	208134124	+	RNA	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKI67	4288	broad.mit.edu	37	10	129902254	129902254	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOBKL1A	92597	broad.mit.edu	37	4	71844961	71844961	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC3	23515	broad.mit.edu	37	21	37732124	37732124	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC3	23515	broad.mit.edu	37	21	37732149	37732149	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOSPD2	158747	broad.mit.edu	37	X	14937715	14937715	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS16	51021	broad.mit.edu	37	10	75010727	75010727	+	Silent	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS16	51021	broad.mit.edu	37	10	75011685	75011685	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTAP	4507	broad.mit.edu	37	9	21862072	21862072	+	3'UTR	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTERFD1	51001	broad.mit.edu	37	8	97256212	97256212	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD1L	25902	broad.mit.edu	37	6	151206708	151206708	+	Intron	SNP	A	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR2	8898	broad.mit.edu	37	11	95598701	95598701	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR7	9108	broad.mit.edu	37	8	17163501	17163501	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11297992	11297992	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTR	4548	broad.mit.edu	37	1	237049656	237049656	+	Missense_Mutation	SNP	A	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100683576	100683576	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1275485	1275485	+	Silent	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10399410	10399410	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK4	340156	broad.mit.edu	37	6	2685595	2685595	+	Silent	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26317265	26317265	+	Silent	SNP	A	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO6	4646	broad.mit.edu	37	6	76551060	76551060	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOCD	93649	broad.mit.edu	37	17	12655756	12655756	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL1	10004	broad.mit.edu	37	11	64813372	64813372	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAE1	8883	broad.mit.edu	37	16	66844582	66844582	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAGPA	51172	broad.mit.edu	37	16	5075345	5075345	+	3'UTR	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPG	64151	broad.mit.edu	37	4	17818967	17818967	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOR2	9612	broad.mit.edu	37	12	124907238	124907238	+	Intron	DEL	A	-	-			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00188	125144	broad.mit.edu	37	17	16342515	16342515	+	Silent	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFB2	4708	broad.mit.edu	37	7	140402885	140402885	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEIL3	55247	broad.mit.edu	37	4	178272775	178272775	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF2	4771	broad.mit.edu	37	22	30077432	30077432	+	Missense_Mutation	SNP	G	C	C	rs74315505		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFIC	4782	broad.mit.edu	37	19	3462611	3462611	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHEDC1	150159	broad.mit.edu	37	4	103822511	103822511	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236144994	236144994	+	Silent	SNP	C	T	T	rs148662892	byFrequency	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPA2	81614	broad.mit.edu	37	15	23012194	23012194	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKD2	85409	broad.mit.edu	37	5	1038130	1038130	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NNT	23530	broad.mit.edu	37	5	43666708	43666708	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH1	4851	broad.mit.edu	37	9	139400074	139400074	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR2	4882	broad.mit.edu	37	9	35794089	35794089	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP2	8828	broad.mit.edu	37	2	206562454	206562454	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50318356	50318356	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN4	387338	broad.mit.edu	37	1	46827467	46827467	+	Silent	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUAK1	9891	broad.mit.edu	37	12	106460501	106460501	+	3'UTR	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135310104	135310104	+	Splice_Site	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBP2B	29989	broad.mit.edu	37	9	136081795	136081795	+	Missense_Mutation	SNP	A	G	G	rs1132279		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228464156	228464156	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28197034	28197034	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OIP5	11339	broad.mit.edu	37	15	41624440	41624440	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A2	341276	broad.mit.edu	37	11	6890841	6890841	+	5'Flank	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C8	138802	broad.mit.edu	37	9	107332060	107332060	+	Silent	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C8	138802	broad.mit.edu	37	9	107332126	107332126	+	Silent	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C8	138802	broad.mit.edu	37	9	107332309	107332309	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C9	286362	broad.mit.edu	37	9	107379953	107379953	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2H1	26716	broad.mit.edu	37	6	29430097	29430097	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M7	391196	broad.mit.edu	37	1	248487240	248487240	+	Missense_Mutation	SNP	C	G	G	rs146462189	byFrequency;by1000genomes	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D9	390199	broad.mit.edu	37	11	59282631	59282631	+	Silent	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52B2	255725	broad.mit.edu	37	11	6191554	6191554	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AS1	219447	broad.mit.edu	37	11	55798482	55798482	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6Y1	391112	broad.mit.edu	37	1	158517081	158517081	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H2	390151	broad.mit.edu	37	11	55873052	55873052	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORAOV1	220064	broad.mit.edu	37	11	69482633	69482633	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL1A	114876	broad.mit.edu	37	18	21819437	21819437	+	Intron	SNP	A	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOF	9381	broad.mit.edu	37	2	26695304	26695304	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29644224	29644224	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXSM	54995	broad.mit.edu	37	3	25833286	25833286	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAN3	255967	broad.mit.edu	37	13	28841074	28841074	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PANK2	80025	broad.mit.edu	37	20	3897586	3897586	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPOLG	64895	broad.mit.edu	37	2	61009128	61009128	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3B	117583	broad.mit.edu	37	2	206023445	206023445	+	Splice_Site	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3	56288	broad.mit.edu	37	10	34408534	34408534	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP15	165631	broad.mit.edu	37	3	122335957	122335957	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP9	83666	broad.mit.edu	37	3	122274116	122274116	+	Intron	SNP	T	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134111323	134111323	+	3'UTR	SNP	T	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55755364	55755364	+	Intron	SNP	T	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA8	56140	broad.mit.edu	37	5	140222271	140222271	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB10	56126	broad.mit.edu	37	5	140574422	140574422	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB14	56122	broad.mit.edu	37	5	140603931	140603931	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB3	56132	broad.mit.edu	37	5	140482231	140482231	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB3	56102	broad.mit.edu	37	5	140750376	140750376	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCYT2	5833	broad.mit.edu	37	17	79867409	79867409	+	Silent	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1B	5153	broad.mit.edu	37	12	54968907	54968907	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	54250187	54250187	+	Intron	SNP	A	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDIA3	2923	broad.mit.edu	37	15	44037280	44037280	+	5'Flank	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX6	5190	broad.mit.edu	37	6	42932421	42932421	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD5	79605	broad.mit.edu	37	1	230486821	230486821	+	Silent	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF17	79960	broad.mit.edu	37	4	129792527	129792527	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKA2	5256	broad.mit.edu	37	X	18924680	18924680	+	Silent	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHRF1	57661	broad.mit.edu	37	11	609537	609537	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI4KA	5297	broad.mit.edu	37	22	21174157	21174157	+	Silent	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGL	9487	broad.mit.edu	37	17	16220083	16220083	+	Intron	SNP	T	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5KL1	138429	broad.mit.edu	37	9	130688207	130688207	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITPNB	23760	broad.mit.edu	37	22	28310287	28310287	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITPNM3	83394	broad.mit.edu	37	17	6441254	6441254	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51609087	51609087	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKN3	29941	broad.mit.edu	37	9	131481807	131481807	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP1	5317	broad.mit.edu	37	1	201289379	201289379	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	144991630	144991630	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLTP	5360	broad.mit.edu	37	20	44539798	44539798	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA4	8228	broad.mit.edu	37	X	7889710	7889710	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA2	23649	broad.mit.edu	37	11	65063281	65063281	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2C	5432	broad.mit.edu	37	16	57503120	57503121	+	Frame_Shift_Ins	INS	-	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEE	445582	broad.mit.edu	37	2	131976380	131976380	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA1	8500	broad.mit.edu	37	11	70222740	70222740	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIBP2	8495	broad.mit.edu	37	11	7586647	7586647	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPOX	5498	broad.mit.edu	37	1	161137915	161137915	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP3R1	5534	broad.mit.edu	37	2	68414352	68414352	+	Intron	SNP	A	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP3R2	5535	broad.mit.edu	37	9	104357089	104357090	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRICKLE2	166336	broad.mit.edu	37	3	64148775	64148775	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCSH	5589	broad.mit.edu	37	19	11560101	11560101	+	Silent	SNP	A	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS35	167681	broad.mit.edu	37	6	84234492	84234492	+	3'UTR	SNP	T	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43680050	43680050	+	Silent	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSIP1	11168	broad.mit.edu	37	9	15486913	15486913	+	Nonsense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMC4	5704	broad.mit.edu	37	19	40486423	40486423	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTBP1	5725	broad.mit.edu	37	19	808703	808703	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTDSS1	9791	broad.mit.edu	37	8	97316287	97316287	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTN	5764	broad.mit.edu	37	7	136912956	136912956	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157387990	157387990	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTX3	5806	broad.mit.edu	37	3	157160340	157160340	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRL2	5819	broad.mit.edu	37	19	45375438	45375438	+	Intron	SNP	C	T	T	rs78446162		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYGL	5836	broad.mit.edu	37	14	51401740	51401740	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QTRT1	81890	broad.mit.edu	37	19	10817973	10817973	+	Intron	SNP	A	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP2	22841	broad.mit.edu	37	10	119798615	119798615	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP4	84440	broad.mit.edu	37	17	29758831	29758831	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP2	25782	broad.mit.edu	37	1	220386243	220386243	+	Missense_Mutation	SNP	T	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGPS2	55103	broad.mit.edu	37	1	178753528	178753528	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBBP4	5928	broad.mit.edu	37	1	33149485	33149485	+	3'UTR	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBBP6	5930	broad.mit.edu	37	16	24581790	24581790	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM27	54439	broad.mit.edu	37	5	145631429	145631429	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBMS2	5939	broad.mit.edu	37	12	56915835	56915835	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBPMS2	348093	broad.mit.edu	37	15	65043729	65043729	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCAN1	1827	broad.mit.edu	37	21	35899012	35899012	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCBTB1	55213	broad.mit.edu	37	13	50123709	50123709	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDH8	50700	broad.mit.edu	37	19	10132255	10132255	+	Nonsense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REST	5978	broad.mit.edu	37	4	57777211	57777211	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RET	5979	broad.mit.edu	37	10	43622099	43622099	+	Missense_Mutation	SNP	C	A	A	rs79853121		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REV3L	5980	broad.mit.edu	37	6	111695225	111695225	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX3	5991	broad.mit.edu	37	9	3293152	3293152	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX5	5993	broad.mit.edu	37	1	151316755	151316755	+	Splice_Site	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFXANK	8625	broad.mit.edu	37	19	19312513	19312513	+	Silent	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGL2	5863	broad.mit.edu	37	6	33263957	33263957	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGL4	266747	broad.mit.edu	37	22	24041092	24041092	+	3'UTR	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD4	285190	broad.mit.edu	37	2	108488039	108488039	+	Silent	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152303012	152303012	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130929757	130929757	+	Silent	SNP	C	A	A	rs77391015	byFrequency;by1000genomes	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLIM	51132	broad.mit.edu	37	X	73811938	73811938	+	Silent	SNP	G	C	C	rs61754468	by1000genomes	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF130	55819	broad.mit.edu	37	5	179407141	179407141	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF144B	255488	broad.mit.edu	37	6	18406126	18406126	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF185	91445	broad.mit.edu	37	22	31588713	31588713	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL37	6167	broad.mit.edu	37	5	40835302	40835302	+	5'UTR	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL8	6132	broad.mit.edu	37	8	146015223	146015223	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPN2	6185	broad.mit.edu	37	20	35826748	35826748	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPN2	6185	broad.mit.edu	37	20	35833324	35833324	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA3	6197	broad.mit.edu	37	X	20174430	20174430	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA4	8986	broad.mit.edu	37	11	64128005	64128005	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67741268	67741268	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67760096	67760096	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUSC2	9853	broad.mit.edu	37	9	35561270	35561270	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMSN1	64092	broad.mit.edu	37	21	15858201	15858201	+	3'UTR	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN9A	6335	broad.mit.edu	37	2	167168258	167168258	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG1	9147	broad.mit.edu	37	14	50267175	50267175	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG8	10806	broad.mit.edu	37	1	243493899	243493899	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP1	29843	broad.mit.edu	37	12	48483038	48483038	+	Intron	SNP	T	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPN1	57190	broad.mit.edu	37	1	26139275	26139275	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA4	5267	broad.mit.edu	37	14	95033575	95033575	+	Silent	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB10	5273	broad.mit.edu	37	18	61602377	61602378	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61328318	61328318	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD4	54093	broad.mit.edu	37	21	37420692	37420692	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B2	10992	broad.mit.edu	37	11	65824204	65824204	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFXN3	81855	broad.mit.edu	37	10	102799248	102799248	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3D19	152503	broad.mit.edu	37	4	152096011	152096011	+	Frame_Shift_Del	DEL	G	-	-			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3GL1	6455	broad.mit.edu	37	19	4363690	4363690	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3RF1	57630	broad.mit.edu	37	4	170017808	170017808	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC10	89790	broad.mit.edu	37	19	51918543	51918543	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC5	8778	broad.mit.edu	37	19	52130914	52130914	+	Frame_Shift_Del	DEL	G	-	-			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC9	27180	broad.mit.edu	37	19	51629008	51629008	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L1	26037	broad.mit.edu	37	14	72116924	72116924	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L1	26037	broad.mit.edu	37	14	72152196	72152196	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKA3	221150	broad.mit.edu	37	13	21742491	21742491	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A4	123041	broad.mit.edu	37	14	92911586	92911586	+	Intron	SNP	T	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A2	9153	broad.mit.edu	37	15	45560623	45560623	+	Intron	SNP	T	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A5	6518	broad.mit.edu	37	1	9097678	9097678	+	Silent	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC34A3	142680	broad.mit.edu	37	9	140128234	140128234	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F3	148641	broad.mit.edu	37	1	234458686	234458686	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC3A2	6520	broad.mit.edu	37	11	62656063	62656063	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A2	6522	broad.mit.edu	37	7	150773144	150773144	+	Silent	SNP	C	G	G	rs150666646		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A3	6508	broad.mit.edu	37	2	220504185	220504185	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20622793	20622793	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40656137	40656137	+	Silent	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO5A1	81796	broad.mit.edu	37	8	70617196	70617196	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO5A1	81796	broad.mit.edu	37	8	70617448	70617448	+	Silent	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168149326	168149326	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD5	4090	broad.mit.edu	37	5	135496714	135496714	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMCR7L	54471	broad.mit.edu	37	22	39910294	39910294	+	Nonsense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPX	23676	broad.mit.edu	37	X	21762043	21762043	+	Intron	SNP	C	A	A	rs113604109		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMURF2	64750	broad.mit.edu	37	17	62568061	62568061	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAR-I	100170222	broad.mit.edu	37	3	190594235	190594235	+	5'Flank	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNCA	6622	broad.mit.edu	37	4	90743277	90743277	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD114-18	767596	broad.mit.edu	37	14	101441201	101441201	+	5'Flank	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNW1	22938	broad.mit.edu	37	14	78197250	78197250	+	Intron	SNP	T	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121420743	121420743	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX6	55553	broad.mit.edu	37	11	16208590	16208590	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP1	6667	broad.mit.edu	37	12	53777321	53777321	+	Silent	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG16	79582	broad.mit.edu	37	2	214354705	214354705	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG6	9576	broad.mit.edu	37	10	22700124	22700124	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220344819	220344819	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPIRE1	56907	broad.mit.edu	37	18	12454314	12454314	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158612435	158612435	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTAN1	6709	broad.mit.edu	37	9	131346541	131346541	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRFBP1	153443	broad.mit.edu	37	5	121355964	121355964	+	Silent	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP1	57522	broad.mit.edu	37	12	64437358	64437358	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP3	9901	broad.mit.edu	37	3	9101977	9101977	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149495086	149495086	+	Intron	SNP	A	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104157462	104157462	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG3	10734	broad.mit.edu	37	7	99784022	99784022	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIM1	6786	broad.mit.edu	37	11	4112437	4112437	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIP1	10963	broad.mit.edu	37	11	63971613	63971613	+	3'UTR	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK11	6794	broad.mit.edu	37	19	1220449	1220449	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON1	11037	broad.mit.edu	37	2	48822502	48822502	+	3'UTR	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRN	6801	broad.mit.edu	37	2	37152177	37152177	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STT3A	3703	broad.mit.edu	37	11	125475492	125475492	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUFU	51684	broad.mit.edu	37	10	104332783	104332783	+	Intron	SNP	C	T	T	rs114750921	by1000genomes	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUV420H1	51111	broad.mit.edu	37	11	67925797	67925797	+	Silent	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVOPL	136306	broad.mit.edu	37	7	138347763	138347763	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCE2	256126	broad.mit.edu	37	19	13011064	13011064	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNJ2	8871	broad.mit.edu	37	6	158487540	158487540	+	Silent	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNJ2	8871	broad.mit.edu	37	6	158499459	158499459	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF9B	51616	broad.mit.edu	37	X	77394948	77394948	+	Intron	SNP	T	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R31	259290	broad.mit.edu	37	12	11183031	11183032	+	Missense_Mutation	DNP	TC	CA	CA			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D7	51256	broad.mit.edu	37	6	13306611	13306611	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D8	11138	broad.mit.edu	37	2	101646204	101646205	+	Missense_Mutation	DNP	GA	AG	AG			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBL2	26608	broad.mit.edu	37	7	72987588	72987588	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBL3	10607	broad.mit.edu	37	16	2024478	2024478	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF3	6929	broad.mit.edu	37	19	1619133	1619133	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP11L2	255394	broad.mit.edu	37	12	106729380	106729380	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRKH	11022	broad.mit.edu	37	1	151742673	151742673	+	3'UTR	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRKH	11022	broad.mit.edu	37	1	151742814	151742814	+	3'UTR	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20850612	20850612	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TET2	54790	broad.mit.edu	37	4	106155476	106155476	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBR1	7046	broad.mit.edu	37	9	101908883	101908883	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THAP9	79725	broad.mit.edu	37	4	83829085	83829085	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169640512	169640512	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD4	79875	broad.mit.edu	37	15	72020963	72020963	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11501737	11501737	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIGD4	201798	broad.mit.edu	37	4	153691681	153691681	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN1	7094	broad.mit.edu	37	9	35707217	35707217	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63045834	63045834	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO2	127391	broad.mit.edu	37	1	40717280	40717280	+	3'UTR	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM123	114908	broad.mit.edu	37	11	102272716	102272716	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM123	114908	broad.mit.edu	37	11	102272953	102272953	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM144	55314	broad.mit.edu	37	4	159161476	159161476	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM39B	55116	broad.mit.edu	37	1	32568034	32568034	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS3	64699	broad.mit.edu	37	21	43810005	43810005	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI1	7135	broad.mit.edu	37	1	201386167	201386167	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOPORS	10210	broad.mit.edu	37	9	32543115	32543115	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53BP1	7158	broad.mit.edu	37	15	43771445	43771445	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53TG5	27296	broad.mit.edu	37	20	44006895	44006895	+	5'UTR	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF5	7188	broad.mit.edu	37	1	211546060	211546060	+	3'UTR	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM2	23321	broad.mit.edu	37	4	154215474	154215474	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM37	4591	broad.mit.edu	37	17	57134138	57134138	+	Intron	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP12	9320	broad.mit.edu	37	2	230667268	230667268	+	Intron	SNP	A	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP13	9319	broad.mit.edu	37	5	895027	895027	+	Missense_Mutation	SNP	T	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45846542	45846542	+	Splice_Site	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81448669	81448669	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN1	10103	broad.mit.edu	37	1	46649908	46649908	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTBK1	84630	broad.mit.edu	37	6	43251404	43251404	+	Nonsense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21A	199223	broad.mit.edu	37	3	39153855	39153855	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC24	164118	broad.mit.edu	37	1	156555560	156555560	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF2	8458	broad.mit.edu	37	1	117634431	117634431	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179417425	179417425	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179432168	179432168	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179585068	179585068	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179650595	179650595	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP5	114791	broad.mit.edu	37	15	22862931	22862931	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP3	7289	broad.mit.edu	37	12	3048413	3048413	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TWSG1	57045	broad.mit.edu	37	18	9337426	9337426	+	Intron	SNP	A	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAP1	51271	broad.mit.edu	37	9	34242054	34242054	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2O	63893	broad.mit.edu	37	17	74392500	74392500	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2Q2P1	388165	broad.mit.edu	37	15	85077490	85077490	+	Intron	SNP	T	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19421528	19421528	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR7	55148	broad.mit.edu	37	14	93685017	93685017	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGDH	7358	broad.mit.edu	37	4	39505518	39505518	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPF1	5976	broad.mit.edu	37	19	18963776	18963776	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215848324	215848324	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215914740	215914740	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTY	7404	broad.mit.edu	37	Y	15372253	15372253	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	27910766	27910766	+	IGR	SNP	T	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49426599	49426599	+	IGR	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	120897902	120897902	+	IGR	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80496687	80496687	+	IGR	SNP	T	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	97639129	97639129	+	IGR	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19467196	19467196	+	IGR	SNP	T	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	47065110	47065110	+	IGR	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	52484328	52484328	+	IGR	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	56573674	56573675	+	IGR	DNP	CA	AT	AT			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	79483101	79483101	+	IGR	SNP	T	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20213705	20213705	+	IGR	SNP	A	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20446149	20446149	+	IGR	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	93844494	93844494	+	IGR	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32926855	32926855	+	IGR	SNP	A	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33402103	33402104	+	IGR	DNP	CC	AA	AA			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	57637157	57637157	+	IGR	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	70277681	70277681	+	IGR	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22500658	22500659	+	IGR	DNP	CC	TA	TA			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23041010	23041010	+	IGR	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	24015767	24015767	+	IGR	SNP	A	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158686855	158686855	+	IGR	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248004052	248004052	+	IGR	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	49747506	49747506	+	IGR	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	15309532	15309532	+	IGR	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	21798387	21798387	+	IGR	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16414288	16414288	+	IGR	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	18851398	18851398	+	IGR	SNP	A	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	36817237	36817237	+	IGR	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117938617	117938617	+	IGR	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	49510267	49510267	+	IGR	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	68251492	68251492	+	IGR	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	183606229	183606229	+	IGR	SNP	T	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	33012916	33012916	+	IGR	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69434269	69434269	+	IGR	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	174350552	174350552	+	IGR	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	98016453	98016453	+	IGR	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27705658	27705658	+	IGR	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	148277441	148277441	+	IGR	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57669727	57669727	+	IGR	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	48109904	48109904	+	IGR	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5312882	5312882	+	IGR	SNP	A	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	8791345	8791345	+	IGR	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	107484798	107484798	+	IGR	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100793205	100793205	+	IGR	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	6587152	6587152	+	IGR	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCP	7415	broad.mit.edu	37	9	35066895	35066895	+	Intron	SNP	T	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL2	245806	broad.mit.edu	37	6	117589584	117589584	+	Silent	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIP	7432	broad.mit.edu	37	6	153076459	153076459	+	Nonsense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS11	55823	broad.mit.edu	37	11	118948942	118948942	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12333222	12333222	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS24	51652	broad.mit.edu	37	2	86732844	86732844	+	3'UTR	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VTN	7448	broad.mit.edu	37	17	26696372	26696372	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR75	84128	broad.mit.edu	37	2	190313061	190313061	+	Intron	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC2	80014	broad.mit.edu	37	4	184240642	184240642	+	3'UTR	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XCL1	6375	broad.mit.edu	37	1	168549444	168549444	+	Intron	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YEATS2	55689	broad.mit.edu	37	3	183508768	183508768	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF1	54432	broad.mit.edu	37	1	54344402	54344402	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100386737	100386737	+	Intron	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB7B	51043	broad.mit.edu	37	1	154987712	154987712	+	Silent	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77764427	77764427	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE1	53349	broad.mit.edu	37	14	73437567	73437567	+	3'UTR	SNP	A	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147113672	147113672	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYM4	9202	broad.mit.edu	37	1	35862214	35862214	+	Silent	SNP	C	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF195	7748	broad.mit.edu	37	11	3380816	3380816	+	Silent	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF215	7762	broad.mit.edu	37	11	6953446	6953446	+	5'UTR	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF256	10172	broad.mit.edu	37	19	58455413	58455413	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF271	10778	broad.mit.edu	37	18	32887308	32887308	+	Silent	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF337	26152	broad.mit.edu	37	20	25655849	25655849	+	Missense_Mutation	SNP	C	A	A	rs146305250	byFrequency	TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF514	84874	broad.mit.edu	37	2	95815686	95815686	+	Missense_Mutation	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF587	84914	broad.mit.edu	37	19	58301567	58301567	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF597	146434	broad.mit.edu	37	16	3486852	3486852	+	Missense_Mutation	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF781	163115	broad.mit.edu	37	19	38160502	38160502	+	Missense_Mutation	SNP	A	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF878	729747	broad.mit.edu	37	19	12157506	12157506	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF91	7644	broad.mit.edu	37	19	23542873	23542873	+	Missense_Mutation	SNP	C	G	G	rs1816638		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZZ3	26009	broad.mit.edu	37	1	78041914	78041914	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19904204	19904204	+	Intron	SNP	A	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22265618	22265618	+	Intron	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102292797	102292797	+	Missense_Mutation	SNP	C	G	G			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32070438	32070438	+	5'Flank	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33013687	33013687	+	5'Flank	SNP	G	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	64035262	64035262	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	15001512	15001512	+	Intron	SNP	G	C	C			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84675807	84675807	+	3'UTR	SNP	C	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
