Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA10	10349	broad.mit.edu	37	17	67170943	67170943	+	Intron	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA6	23460	broad.mit.edu	37	17	67079099	67079099	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI2	10152	broad.mit.edu	37	2	204267336	204267336	+	Silent	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACPT	93650	broad.mit.edu	37	19	51297983	51297983	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSF3	197322	broad.mit.edu	37	16	89187116	89187116	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM1	116285	broad.mit.edu	37	16	20648732	20648732	+	Silent	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20563423	20563423	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVRL1	94	broad.mit.edu	37	12	52310003	52310003	+	Missense_Mutation	SNP	G	A	A	rs121909284		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64507906	64507906	+	Missense_Mutation	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY3	109	broad.mit.edu	37	2	25044432	25044432	+	Silent	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCYAP1R1	117	broad.mit.edu	37	7	31144470	31144470	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH5	128	broad.mit.edu	37	4	100009805	100009805	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGR2	10551	broad.mit.edu	37	7	16841359	16841359	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105409806	105409806	+	Silent	SNP	G	T	T	rs140129247	by1000genomes	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK7	122481	broad.mit.edu	37	14	96954772	96954772	+	3'UTR	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKNAD1	254268	broad.mit.edu	37	1	109392083	109392083	+	Intron	SNP	A	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH4A1	8659	broad.mit.edu	37	1	19209814	19209814	+	Missense_Mutation	SNP	C	A	A	rs138334153		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR12	130540	broad.mit.edu	37	2	202153270	202153270	+	3'UTR	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP2M1	1173	broad.mit.edu	37	3	183899735	183899735	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APAF1	317	broad.mit.edu	37	12	99121139	99121139	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP24	83478	broad.mit.edu	37	4	86893267	86893267	+	Silent	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSG	22901	broad.mit.edu	37	17	66268933	66268933	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD5	79915	broad.mit.edu	37	17	29185093	29185093	+	Intron	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF1	466	broad.mit.edu	37	12	51208024	51208027	+	Intron	DEL	ACTT	-	-			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG10	83734	broad.mit.edu	37	5	81460021	81460021	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A5	344905	broad.mit.edu	37	3	193081170	193081170	+	Missense_Mutation	SNP	T	A	A	rs150024258		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1B3	483	broad.mit.edu	37	3	141595789	141595789	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0A2	23545	broad.mit.edu	37	12	124237000	124237000	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	116919735	116919735	+	Intron	SNP	T	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALT6	9331	broad.mit.edu	37	18	29206997	29206997	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69703537	69703537	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAIAP2	10458	broad.mit.edu	37	17	79060372	79060372	+	Missense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33384214	33384214	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNIP3L	665	broad.mit.edu	37	8	26265505	26265505	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRIP1	83990	broad.mit.edu	37	17	59763162	59763162	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSN	8927	broad.mit.edu	37	3	49692745	49692745	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD12	84464	broad.mit.edu	37	16	3640666	3640666	+	Missense_Mutation	SNP	C	A	A	rs34903148		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTK	695	broad.mit.edu	37	X	100608442	100608442	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTRC	8945	broad.mit.edu	37	10	103291028	103291028	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZW2	28969	broad.mit.edu	37	7	16736596	16736596	+	Silent	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf140	387640	broad.mit.edu	37	10	21806753	21806753	+	5'UTR	SNP	T	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf82	220042	broad.mit.edu	37	11	82645329	82645329	+	Silent	SNP	T	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112703826	112703826	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf102	55051	broad.mit.edu	37	14	90778937	90778937	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf149	112849	broad.mit.edu	37	14	59945949	59945949	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf1	11161	broad.mit.edu	37	14	76121177	76121177	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf37	145407	broad.mit.edu	37	14	58605979	58605979	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf28	126321	broad.mit.edu	37	19	3546137	3546137	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf57	79173	broad.mit.edu	37	19	14000978	14000978	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf70	125988	broad.mit.edu	37	19	5680448	5680448	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf49	84066	broad.mit.edu	37	1	178489911	178489911	+	Missense_Mutation	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf57	54059	broad.mit.edu	37	21	47706941	47706941	+	Silent	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf26	84319	broad.mit.edu	37	3	99890704	99890704	+	Silent	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf46	201725	broad.mit.edu	37	4	159590811	159590811	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41160464	41160464	+	Silent	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf136	221545	broad.mit.edu	37	6	30619167	30619167	+	Silent	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf211	79624	broad.mit.edu	37	6	151789867	151789867	+	Silent	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf26	79034	broad.mit.edu	37	7	6639662	6639662	+	Silent	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf47	221908	broad.mit.edu	37	7	100033234	100033234	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABP1	9478	broad.mit.edu	37	12	121098168	121098168	+	Intron	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2566832	2566832	+	Silent	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMSAP1L1	23271	broad.mit.edu	37	1	200817734	200817734	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP8AP2	9994	broad.mit.edu	37	6	90578701	90578701	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAST	831	broad.mit.edu	37	5	96100940	96100940	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPERG	57828	broad.mit.edu	37	19	38858346	38858346	+	Missense_Mutation	SNP	G	T	T	rs148888831	byFrequency	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBX2	84733	broad.mit.edu	37	17	77755652	77755652	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC69	26112	broad.mit.edu	37	5	150584997	150584997	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL16	6360	broad.mit.edu	37	17	34304500	34304500	+	3'UTR	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT6B	10693	broad.mit.edu	37	17	33259312	33259312	+	Intron	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD209	30835	broad.mit.edu	37	19	7812414	7812414	+	5'UTR	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDADC1	81602	broad.mit.edu	37	13	49848447	49848447	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC73	79577	broad.mit.edu	37	1	193205262	193205262	+	Intron	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24535749	24535749	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH17	1015	broad.mit.edu	37	8	95143234	95143234	+	Intron	DEL	A	-	-			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL5	6792	broad.mit.edu	37	X	18631440	18631440	+	Intron	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR2	27443	broad.mit.edu	37	22	18018128	18018128	+	Intron	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR3	1951	broad.mit.edu	37	3	48670422	48670422	+	Silent	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104064548	104064548	+	Missense_Mutation	SNP	C	G	G	rs146277781	byFrequency	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP250	11190	broad.mit.edu	37	20	34061189	34061189	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP63	80254	broad.mit.edu	37	3	134280257	134280257	+	Silent	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CERK	64781	broad.mit.edu	37	22	47095273	47095273	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES1	1066	broad.mit.edu	37	16	55860016	55860016	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196712775	196712775	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFTR	1080	broad.mit.edu	37	7	117282538	117282538	+	Nonsense_Mutation	SNP	C	G	G	rs76649725		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD9	80205	broad.mit.edu	37	16	53348933	53348933	+	Missense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM1	1128	broad.mit.edu	37	11	62677782	62677782	+	Missense_Mutation	SNP	C	A	A	rs150954530		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA6	8973	broad.mit.edu	37	8	42611669	42611669	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIRH1A	84916	broad.mit.edu	37	16	69189791	69189791	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP4	10970	broad.mit.edu	37	12	106632707	106632707	+	3'UTR	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIC2	1193	broad.mit.edu	37	X	154507140	154507140	+	3'UTR	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLRN3	119467	broad.mit.edu	37	10	129676623	129676623	+	Silent	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLUL1	27098	broad.mit.edu	37	18	641487	641487	+	Silent	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMYA5	202333	broad.mit.edu	37	5	79026143	79026143	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	3081871	3081871	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103548461	103548461	+	Silent	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94038733	94038733	+	Splice_Site	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189854905	189854905	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111091027	111091027	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	70944631	70944631	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COQ6	51004	broad.mit.edu	37	14	74424915	74424915	+	Missense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPEB3	22849	broad.mit.edu	37	10	93851740	93851740	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE3	8895	broad.mit.edu	37	8	87544779	87544779	+	Missense_Mutation	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE6	9362	broad.mit.edu	37	14	24545604	24545604	+	Missense_Mutation	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT1C	126129	broad.mit.edu	37	19	50200543	50200543	+	Intron	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB5	9586	broad.mit.edu	37	7	28858876	28858876	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIPAK	285464	broad.mit.edu	37	4	1389322	1389322	+	Silent	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISPLD1	83690	broad.mit.edu	37	8	75924672	75924672	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RA	1438	broad.mit.edu	37	X	1428412	1428412	+	3'UTR	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF3R	1441	broad.mit.edu	37	1	36933887	36933887	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTR9	9646	broad.mit.edu	37	11	10800533	10800533	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP2	26999	broad.mit.edu	37	5	156731413	156731413	+	Intron	SNP	T	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4B1	1580	broad.mit.edu	37	1	47278436	47278436	+	Intron	SNP	A	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F2	8529	broad.mit.edu	37	19	15997064	15997064	+	Missense_Mutation	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4V2	285440	broad.mit.edu	37	4	187122497	187122497	+	Splice_Site	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP51A1	1595	broad.mit.edu	37	7	91752461	91752461	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAPK1	1612	broad.mit.edu	37	9	90315030	90315037	+	Splice_Site	DEL	AGGTTTGG	-	-			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAPP1	27071	broad.mit.edu	37	4	100774382	100774382	+	Silent	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCP2	167227	broad.mit.edu	37	5	112337369	112337369	+	Silent	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDHD2	23259	broad.mit.edu	37	8	38105235	38105235	+	Missense_Mutation	SNP	C	T	T	rs145943165	byFrequency	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX5	1655	broad.mit.edu	37	17	62498280	62498280	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2A	27147	broad.mit.edu	37	7	140301553	140301553	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC1B	55789	broad.mit.edu	37	5	59901643	59901643	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGAT1	8694	broad.mit.edu	37	8	145541005	145541005	+	Missense_Mutation	SNP	C	A	A	rs138800445		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX35	60625	broad.mit.edu	37	20	37638884	37638884	+	Intron	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG5	9231	broad.mit.edu	37	10	79603260	79603260	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7637925	7637925	+	Missense_Mutation	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20952919	20952919	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK6	220164	broad.mit.edu	37	18	67365639	67365639	+	Splice_Site	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37617525	37617525	+	Missense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP3	10072	broad.mit.edu	37	11	66260111	66260111	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD3	1814	broad.mit.edu	37	3	113850095	113850095	+	Silent	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28588282	28588282	+	Silent	SNP	G	A	A	rs138254140		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUOX2	50506	broad.mit.edu	37	15	45397818	45397818	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDARADD	128178	broad.mit.edu	37	1	236646636	236646636	+	3'UTR	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFR3A	23167	broad.mit.edu	37	8	132958769	132958769	+	Silent	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHD4	30844	broad.mit.edu	37	15	42211623	42211623	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G1	1981	broad.mit.edu	37	3	184034358	184034358	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAC2	60528	broad.mit.edu	37	17	12897821	12897821	+	Splice_Site	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL4	6785	broad.mit.edu	37	6	80636031	80636031	+	Nonsense_Mutation	SNP	A	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELTD1	64123	broad.mit.edu	37	1	79392851	79392851	+	Intron	SNP	A	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENKUR	219670	broad.mit.edu	37	10	25304914	25304914	+	5'UTR	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENO3	2027	broad.mit.edu	37	17	4858835	4858835	+	Silent	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP3	5169	broad.mit.edu	37	6	131973770	131973770	+	Silent	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP3	5169	broad.mit.edu	37	6	131973774	131973774	+	Missense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4A	64097	broad.mit.edu	37	5	111519622	111519622	+	Intron	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA1	2138	broad.mit.edu	37	8	72129125	72129125	+	Intron	SNP	A	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66204732	66204732	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM104B	90736	broad.mit.edu	37	X	55170248	55170248	+	Silent	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM126B	285172	broad.mit.edu	37	2	201873785	201873785	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139144882	139144882	+	Missense_Mutation	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM18A	780776	broad.mit.edu	37	16	10867903	10867903	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM36A	116228	broad.mit.edu	37	1	245005601	245005601	+	Intron	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126372722	126372722	+	Silent	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO42	54455	broad.mit.edu	37	1	16578744	16578744	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHL5	9457	broad.mit.edu	37	6	97053872	97053872	+	Silent	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152285802	152285802	+	Silent	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180057164	180057164	+	Intron	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL2	114793	broad.mit.edu	37	2	153399389	153399389	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO3	2328	broad.mit.edu	37	1	171077331	171077331	+	Missense_Mutation	SNP	T	C	C	rs72549327		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCN3	29999	broad.mit.edu	37	7	127240303	127240303	+	Silent	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1	79187	broad.mit.edu	37	19	4306074	4306074	+	Intron	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHB	2488	broad.mit.edu	37	11	30253374	30253374	+	Intron	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB4	128954	broad.mit.edu	37	22	17449263	17449263	+	Silent	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120574969	120574969	+	Intron	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCOM1	145781	broad.mit.edu	37	15	57913797	57913797	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF6	392255	broad.mit.edu	37	8	97172695	97172695	+	Silent	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIT2	9815	broad.mit.edu	37	12	110390306	110390306	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLCCI1	113263	broad.mit.edu	37	7	8062112	8062112	+	Splice_Site	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNB2	2783	broad.mit.edu	37	7	100275742	100275742	+	Silent	SNP	A	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNL1	2794	broad.mit.edu	37	6	30521020	30521020	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC3	2719	broad.mit.edu	37	X	132670081	132670081	+	3'UTR	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPCPD1	56261	broad.mit.edu	37	20	5528362	5528362	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR172B	55065	broad.mit.edu	37	17	4936694	4936694	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR179	440435	broad.mit.edu	37	17	36484439	36484439	+	Silent	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA2	2891	broad.mit.edu	37	4	158262697	158262697	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA4	2893	broad.mit.edu	37	11	105795124	105795124	+	Splice_Site	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120833308	120833308	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP1	23426	broad.mit.edu	37	12	66961855	66961855	+	Intron	SNP	T	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK4	2868	broad.mit.edu	37	4	2965875	2965875	+	Intron	DEL	C	-	-			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA2B	2981	broad.mit.edu	37	1	42621290	42621290	+	3'UTR	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAPLN4	404037	broad.mit.edu	37	19	19377144	19377144	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS2	3037	broad.mit.edu	37	8	122626661	122626661	+	Silent	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDC	3067	broad.mit.edu	37	15	50557762	50557762	+	Intron	SNP	A	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR5B	54497	broad.mit.edu	37	2	37217795	37217795	+	Missense_Mutation	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD2	143279	broad.mit.edu	37	10	93247529	93247529	+	Silent	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELB	92797	broad.mit.edu	37	12	66708984	66708984	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELZ	9931	broad.mit.edu	37	17	65144729	65144729	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H1D	3007	broad.mit.edu	37	6	26234663	26234663	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST2H2BF	440689	broad.mit.edu	37	1	149783640	149783640	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-B	3106	broad.mit.edu	37	6	31322453	31322453	+	Intron	SNP	A	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-B	3106	broad.mit.edu	37	6	31322830	31322830	+	Intron	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLTF	6596	broad.mit.edu	37	3	148757347	148757347	+	Intron	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRPDL	9987	broad.mit.edu	37	4	83347179	83347179	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB2	3212	broad.mit.edu	37	17	46620496	46620496	+	Silent	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTT	3064	broad.mit.edu	37	4	3148843	3148843	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDH3B	3420	broad.mit.edu	37	20	2640290	2640290	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT172	26160	broad.mit.edu	37	2	27679584	27679584	+	Intron	SNP	C	T	T	rs137969555	by1000genomes	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2R	3482	broad.mit.edu	37	6	160517360	160517360	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP2	3485	broad.mit.edu	37	2	217528846	217528846	+	3'UTR	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130420592	130420592	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBKAP	8518	broad.mit.edu	37	9	111662725	111662725	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL5RA	3568	broad.mit.edu	37	3	3139822	3139822	+	Missense_Mutation	SNP	T	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INADL	10207	broad.mit.edu	37	1	62237198	62237198	+	Missense_Mutation	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INCENP	3619	broad.mit.edu	37	11	61897928	61897928	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSIG1	3638	broad.mit.edu	37	7	155093317	155093317	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS8	55656	broad.mit.edu	37	8	95869066	95869066	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCC	55721	broad.mit.edu	37	1	32671964	32671964	+	Intron	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK3	11213	broad.mit.edu	37	12	66611258	66611258	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRF1	3659	broad.mit.edu	37	5	131822793	131822793	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX6	79190	broad.mit.edu	37	16	55361654	55361654	+	Silent	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31408920	31408920	+	Missense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB3	3690	broad.mit.edu	37	17	45369787	45369787	+	Silent	SNP	C	A	A	rs150138754		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42127270	42127270	+	Silent	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JPH1	56704	broad.mit.edu	37	8	75227253	75227253	+	Missense_Mutation	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA1	3736	broad.mit.edu	37	12	5021670	5021670	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB1	3745	broad.mit.edu	37	20	47990222	47990222	+	Silent	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19479731	19479731	+	Missense_Mutation	SNP	G	A	A	rs138531032	byFrequency;by1000genomes	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ3	3760	broad.mit.edu	37	2	155555493	155555493	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ3	3760	broad.mit.edu	37	2	155555552	155555552	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0802	23255	broad.mit.edu	37	18	8813163	8813163	+	Missense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0895L	653319	broad.mit.edu	37	16	67210547	67210547	+	3'UTR	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1161	57462	broad.mit.edu	37	9	34372822	34372822	+	Silent	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1199	57214	broad.mit.edu	37	15	81171078	81171078	+	Silent	SNP	T	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1432	57589	broad.mit.edu	37	9	5769139	5769139	+	Silent	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39745560	39745560	+	Intron	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55278478	55278478	+	Intron	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF12	11278	broad.mit.edu	37	13	74339025	74339025	+	Intron	SNP	T	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL13	90293	broad.mit.edu	37	X	117079539	117079539	+	Splice_Site	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL4	56062	broad.mit.edu	37	X	86921487	86921487	+	Missense_Mutation	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL8	57563	broad.mit.edu	37	4	88116721	88116721	+	5'UTR	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK10	5655	broad.mit.edu	37	19	51518192	51518192	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK7	5650	broad.mit.edu	37	19	51480790	51480790	+	3'UTR	SNP	C	T	T	rs112139149	byFrequency;by1000genomes	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT79	338785	broad.mit.edu	37	12	53227843	53227843	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-10	353333	broad.mit.edu	37	21	46057941	46057941	+	Missense_Mutation	SNP	T	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP20-2	337976	broad.mit.edu	37	21	32007755	32007755	+	Missense_Mutation	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129724953	129724953	+	Intron	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112522851	112522851	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMA1	51474	broad.mit.edu	37	12	50570901	50570901	+	Silent	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN7C	55327	broad.mit.edu	37	11	27520959	27520959	+	Missense_Mutation	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC387646	387646	broad.mit.edu	37	10	27537149	27537149	+	3'UTR	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC651250	651250	broad.mit.edu	37	17	66123352	66123352	+	RNA	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22550502	22550502	+	RNA	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23104914	23104914	+	RNA	SNP	T	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170081729	170081729	+	Intron	SNP	T	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC1	55227	broad.mit.edu	37	6	53761995	53761995	+	Intron	SNP	T	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC23	10233	broad.mit.edu	37	12	7016626	7016626	+	Intron	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEE1	57692	broad.mit.edu	37	X	75648398	75648398	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K5	4217	broad.mit.edu	37	6	137017054	137017054	+	Intron	SNP	T	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST1	22983	broad.mit.edu	37	19	12982038	12982038	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATR3	9782	broad.mit.edu	37	5	138661298	138661298	+	Missense_Mutation	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEFV	4210	broad.mit.edu	37	16	3293984	3293984	+	Intron	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MET	4233	broad.mit.edu	37	7	116435946	116435946	+	Missense_Mutation	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGA	23269	broad.mit.edu	37	15	42042623	42042629	+	Frame_Shift_Del	DEL	ACTTACT	-	-			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGA	23269	broad.mit.edu	37	15	42052655	42052655	+	Silent	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC42105	167359	broad.mit.edu	37	5	43232305	43232305	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR548F1	100302192	broad.mit.edu	37	10	56367708	56367708	+	RNA	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT10	8028	broad.mit.edu	37	10	22015199	22015199	+	Silent	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MME	4311	broad.mit.edu	37	3	154859990	154859990	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORN1	79906	broad.mit.edu	37	1	2321447	2321447	+	Intron	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP3	4356	broad.mit.edu	37	17	41905172	41905172	+	Missense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL16	54948	broad.mit.edu	37	11	59573867	59573867	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST1P9	11223	broad.mit.edu	37	1	17085014	17085014	+	Silent	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR11	10903	broad.mit.edu	37	1	149905237	149905237	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11227550	11227550	+	Silent	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTTP	4547	broad.mit.edu	37	4	100504498	100504498	+	Intron	DEL	T	-	-			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9048000	9048000	+	Missense_Mutation	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9071029	9071029	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9071370	9071370	+	Missense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15854356	15854356	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10354166	10354166	+	Silent	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10295387	10295387	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7A	4647	broad.mit.edu	37	11	76885842	76885842	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA25	80018	broad.mit.edu	37	12	112485592	112485592	+	Missense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NACC1	112939	broad.mit.edu	37	19	13249157	13249158	+	Missense_Mutation	DNP	GC	TT	TT			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAGLU	4669	broad.mit.edu	37	17	40694954	40694954	+	Intron	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV1	89796	broad.mit.edu	37	1	201781101	201781101	+	Missense_Mutation	SNP	A	G	G	rs148645972		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145297759	145297759	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD3	23310	broad.mit.edu	37	11	134022911	134022911	+	Silent	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA2	10499	broad.mit.edu	37	8	71036906	71036906	+	Intron	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOR1	9611	broad.mit.edu	37	17	15964752	15964752	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOR2	9612	broad.mit.edu	37	12	124957515	124957516	+	Frame_Shift_Ins	INS	-	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDRG4	65009	broad.mit.edu	37	16	58538633	58538633	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFB2	4708	broad.mit.edu	37	7	140402694	140402694	+	Silent	SNP	C	A	A	rs144669522		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21108395	21108395	+	Silent	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK9	91754	broad.mit.edu	37	14	75580976	75580976	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45173775	45173775	+	Silent	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEUROD4	58158	broad.mit.edu	37	12	55421242	55421242	+	3'UTR	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC2	4773	broad.mit.edu	37	20	50139665	50139665	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN2	154215	broad.mit.edu	37	6	125139557	125139557	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLN	57486	broad.mit.edu	37	5	65088485	65088485	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC5	84166	broad.mit.edu	37	16	57077562	57077562	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP56	10528	broad.mit.edu	37	20	2636241	2636241	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1AP	9722	broad.mit.edu	37	1	162124163	162124163	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX5	79400	broad.mit.edu	37	15	69314573	69314573	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPY2R	4887	broad.mit.edu	37	4	156135229	156135229	+	Silent	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1D1	9572	broad.mit.edu	37	17	38251279	38251279	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NVL	4931	broad.mit.edu	37	1	224495875	224495875	+	Missense_Mutation	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NWD1	284434	broad.mit.edu	37	19	16890131	16890131	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NWD1	284434	broad.mit.edu	37	19	16918385	16918385	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODAM	54959	broad.mit.edu	37	4	71066318	71066318	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167673884	167673884	+	Silent	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G7	390265	broad.mit.edu	37	11	123909541	123909541	+	Silent	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G9	219870	broad.mit.edu	37	11	123894183	123894183	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10Z1	128368	broad.mit.edu	37	1	158577073	158577073	+	Frame_Shift_Del	DEL	C	-	-			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2H2	7932	broad.mit.edu	37	6	29556336	29556336	+	Missense_Mutation	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L3	391192	broad.mit.edu	37	1	248224188	248224188	+	Missense_Mutation	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C15	81309	broad.mit.edu	37	11	55321870	55321870	+	Missense_Mutation	SNP	A	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51I1	390063	broad.mit.edu	37	11	5462439	5462439	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8D2	283160	broad.mit.edu	37	11	124189796	124189796	+	Missense_Mutation	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL10	114884	broad.mit.edu	37	3	31837374	31837374	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH2	341277	broad.mit.edu	37	11	7722003	7722003	+	Silent	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALLD	23022	broad.mit.edu	37	4	169432721	169432721	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAXIP1	22976	broad.mit.edu	37	7	154738478	154738478	+	Missense_Mutation	SNP	T	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11Y	83259	broad.mit.edu	37	Y	4968620	4968620	+	Missense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11Y	83259	broad.mit.edu	37	Y	5441980	5441980	+	Intron	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH12	51294	broad.mit.edu	37	5	141331052	141331052	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB11	56125	broad.mit.edu	37	5	140579307	140579307	+	5'Flank	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB12	56124	broad.mit.edu	37	5	140590315	140590315	+	Silent	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB2	56133	broad.mit.edu	37	5	140476411	140476411	+	Silent	SNP	A	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB4	56131	broad.mit.edu	37	5	140501869	140501869	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA4	56111	broad.mit.edu	37	5	140736874	140736874	+	Missense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB2	56103	broad.mit.edu	37	5	140740398	140740398	+	Silent	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGC4	56098	broad.mit.edu	37	5	140864841	140864841	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCGF1	84759	broad.mit.edu	37	2	74733992	74733992	+	Silent	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82544361	82544361	+	Frame_Shift_Del	DEL	A	-	-			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144923631	144923631	+	Intron	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55146502	55146502	+	Missense_Mutation	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGK1	5230	broad.mit.edu	37	X	77380591	77380591	+	Intron	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20L1	51105	broad.mit.edu	37	8	133849973	133849973	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIBF1	10464	broad.mit.edu	37	13	73468215	73468215	+	Intron	SNP	A	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGO	84720	broad.mit.edu	37	9	35091480	35091480	+	Silent	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CD	5293	broad.mit.edu	37	1	9779005	9779005	+	Intron	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PILRB	29990	broad.mit.edu	37	7	99956586	99956586	+	Nonsense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITPNB	23760	broad.mit.edu	37	22	28290701	28290701	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47870862	47870862	+	Silent	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198948757	198948757	+	Silent	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCXD3	345557	broad.mit.edu	37	5	41475572	41475572	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131960544	131960544	+	Intron	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG5	57449	broad.mit.edu	37	1	6528641	6528641	+	Nonsense_Mutation	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD1	5351	broad.mit.edu	37	1	12024347	12024347	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD3	8985	broad.mit.edu	37	7	100855518	100855518	+	Intron	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2CL	441194	broad.mit.edu	37	7	6759376	6759376	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNMAL2	57469	broad.mit.edu	37	19	46997853	46997853	+	Silent	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POFUT1	23509	broad.mit.edu	37	20	30804435	30804435	+	Silent	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133209087	133209087	+	Missense_Mutation	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POMGNT1	55624	broad.mit.edu	37	1	46656198	46656198	+	Intron	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PON3	5446	broad.mit.edu	37	7	94989416	94989416	+	Missense_Mutation	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAN-P2RY11	692312	broad.mit.edu	37	19	10220376	10220376	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIP5K2	23262	broad.mit.edu	37	5	102522193	102522193	+	Intron	SNP	A	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16A	84988	broad.mit.edu	37	8	145724389	145724389	+	Silent	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R1A	5518	broad.mit.edu	37	19	52716118	52716118	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R3C	55012	broad.mit.edu	37	14	35591050	35591050	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB3	5544	broad.mit.edu	37	12	11420643	11420643	+	Silent	SNP	C	A	A	rs112519996		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB4	5545	broad.mit.edu	37	12	11339600	11339600	+	Intron	SNP	T	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRC1	9055	broad.mit.edu	37	15	91512758	91512758	+	Silent	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDX1	5052	broad.mit.edu	37	1	45980163	45980163	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRLR	5618	broad.mit.edu	37	5	35068404	35068404	+	Intron	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT8	56341	broad.mit.edu	37	12	3701383	3701383	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF6	24148	broad.mit.edu	37	20	62658492	62658492	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRX1	5396	broad.mit.edu	37	1	170695400	170695400	+	Missense_Mutation	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG3	5671	broad.mit.edu	37	19	43233350	43233350	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSKH2	85481	broad.mit.edu	37	8	87076709	87076709	+	Missense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11579584	11579584	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD3	374308	broad.mit.edu	37	10	27702933	27702933	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QRICH2	84074	broad.mit.edu	37	17	74287426	74287426	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB30	27314	broad.mit.edu	37	11	82693228	82693228	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1CC1	9821	broad.mit.edu	37	8	53569134	53569134	+	Silent	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REEP4	80346	broad.mit.edu	37	8	21998023	21998023	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RENBP	5973	broad.mit.edu	37	X	153206851	153206851	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RERE	473	broad.mit.edu	37	1	8674606	8674606	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX4	5992	broad.mit.edu	37	12	107080752	107080752	+	Silent	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS22	26166	broad.mit.edu	37	8	100994288	100994288	+	Silent	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS8	85397	broad.mit.edu	37	1	182615944	182615944	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDD1	84236	broad.mit.edu	37	2	227731886	227731886	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5B	64777	broad.mit.edu	37	5	177569838	177569838	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF139	11236	broad.mit.edu	37	8	125498594	125498594	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF220	55182	broad.mit.edu	37	1	44878356	44878356	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROS1	6098	broad.mit.edu	37	6	117647511	117647511	+	Silent	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10464923	10464923	+	Missense_Mutation	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPA2	6118	broad.mit.edu	37	1	28241029	28241029	+	5'UTR	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS24	6229	broad.mit.edu	37	10	79800494	79800494	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRN3P1	730092	broad.mit.edu	37	16	21817596	21817596	+	Intron	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO2	340419	broad.mit.edu	37	8	108970419	108970419	+	Missense_Mutation	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237617733	237617733	+	Silent	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51174513	51174513	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL3	27164	broad.mit.edu	37	18	76757145	76757145	+	Silent	SNP	C	A	A	rs148335210	byFrequency	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMM50	25813	broad.mit.edu	37	22	44368741	44368741	+	Intron	DEL	C	-	-	rs71188424		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAPS2	9701	broad.mit.edu	37	22	50845326	50845326	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF1	6305	broad.mit.edu	37	22	50898678	50898678	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCARA5	286133	broad.mit.edu	37	8	27764624	27764624	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38833772	38833772	+	Intron	SNP	T	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165969338	165969338	+	Intron	SNP	A	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN8A	6334	broad.mit.edu	37	12	52168196	52168196	+	Intron	SNP	A	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDC3	9672	broad.mit.edu	37	1	31351584	31351584	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDHAP2	727956	broad.mit.edu	37	3	195404612	195404612	+	Missense_Mutation	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDHD	6392	broad.mit.edu	37	11	111958662	111958662	+	Missense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4273011	4273011	+	Silent	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3B	7869	broad.mit.edu	37	3	50312960	50312960	+	Intron	DEL	G	-	-			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6A	57556	broad.mit.edu	37	5	115813918	115813918	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB8	5271	broad.mit.edu	37	18	61654402	61654402	+	Silent	SNP	C	A	A	rs150328649	byFrequency	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42281614	42281614	+	Silent	SNP	A	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B3	23450	broad.mit.edu	37	16	70590035	70590035	+	Intron	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFTPB	6439	broad.mit.edu	37	2	85890377	85890377	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK269	79834	broad.mit.edu	37	15	77406519	77406519	+	Silent	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3KBP1	30011	broad.mit.edu	37	X	19560190	19560190	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIDT1	54847	broad.mit.edu	37	3	113285207	113285207	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRT6	51548	broad.mit.edu	37	19	4180714	4180714	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A2	6555	broad.mit.edu	37	13	103698436	103698436	+	3'UTR	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A3	6559	broad.mit.edu	37	16	56938352	56938352	+	Silent	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A5	284111	broad.mit.edu	37	17	6599238	6599238	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A1	6563	broad.mit.edu	37	18	43329823	43329823	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A3	6572	broad.mit.edu	37	10	50819573	50819573	+	Missense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A3	6572	broad.mit.edu	37	10	50819935	50819935	+	Silent	SNP	A	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A3	64078	broad.mit.edu	37	9	86903009	86903009	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20621245	20621245	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A6	6533	broad.mit.edu	37	3	14508105	14508105	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A9	6536	broad.mit.edu	37	1	44463225	44463225	+	Silent	SNP	G	T	T	rs2286246		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A6OS	84138	broad.mit.edu	37	16	68344680	68344680	+	Silent	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A7	9056	broad.mit.edu	37	14	23249263	23249263	+	Intron	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A10	285335	broad.mit.edu	37	3	111901274	111901274	+	Intron	SNP	T	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168189533	168189533	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18897085	18897085	+	Intron	SNP	A	G	G	rs150351611	by1000genomes	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG7	9887	broad.mit.edu	37	1	183502430	183502430	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMURF1	57154	broad.mit.edu	37	7	98654648	98654648	+	Intron	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD5	10322	broad.mit.edu	37	2	73448960	73448960	+	Missense_Mutation	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPB2	6629	broad.mit.edu	37	20	16720905	16720905	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPG	6637	broad.mit.edu	37	2	70520844	70520844	+	5'UTR	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25207212	25207212	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25221561	25221561	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS1	10580	broad.mit.edu	37	10	97117517	97117517	+	Missense_Mutation	SNP	C	A	A	rs149433187		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS2	8470	broad.mit.edu	37	4	186515027	186515027	+	Intron	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108536277	108536277	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD3	84926	broad.mit.edu	37	12	53459680	53459680	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55657542	55657542	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	41078030	41078030	+	Silent	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTLC2	9517	broad.mit.edu	37	14	78036662	78036662	+	Intron	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53076722	53076722	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK3	6788	broad.mit.edu	37	8	99917187	99917187	+	Intron	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRN	6801	broad.mit.edu	37	2	37096771	37096771	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD1	64420	broad.mit.edu	37	9	114911613	114911613	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2A	9900	broad.mit.edu	37	1	149880915	149880915	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2B	9899	broad.mit.edu	37	15	91769556	91769556	+	Silent	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVOP	55530	broad.mit.edu	37	12	109313526	109313526	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152665455	152665455	+	Intron	SNP	A	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152792773	152792773	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT13	57586	broad.mit.edu	37	11	45265664	45265664	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT13	57586	broad.mit.edu	37	11	45274044	45274044	+	Silent	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1D	79101	broad.mit.edu	37	11	93469869	93469869	+	Missense_Mutation	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF2	6873	broad.mit.edu	37	8	120805534	120805534	+	Intron	SNP	T	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF7L	54457	broad.mit.edu	37	X	100531188	100531188	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARBP1	6894	broad.mit.edu	37	1	234529176	234529176	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARSL2	123283	broad.mit.edu	37	15	102241329	102241329	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D24	57465	broad.mit.edu	37	16	2569287	2569287	+	Missense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	53254359	53254359	+	5'UTR	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30704595	30704595	+	Missense_Mutation	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFEB	7942	broad.mit.edu	37	6	41704008	41704008	+	5'Flank	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFB3	7043	broad.mit.edu	37	14	76446949	76446949	+	Silent	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBR3	7049	broad.mit.edu	37	1	92193234	92193234	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THADA	63892	broad.mit.edu	37	2	43779386	43779386	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEM4	117145	broad.mit.edu	37	1	151861595	151861595	+	Intron	SNP	T	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC8	147138	broad.mit.edu	37	17	76130523	76130523	+	Silent	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	126128836	126128836	+	Intron	SNP	T	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM145	284339	broad.mit.edu	37	19	42820542	42820542	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM80	283232	broad.mit.edu	37	11	700597	700597	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68929020	68929020	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNC	3371	broad.mit.edu	37	9	117846714	117846714	+	Silent	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFSF4	7292	broad.mit.edu	37	1	173155820	173155820	+	Silent	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6A	27327	broad.mit.edu	37	16	24820840	24820840	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175355363	175355363	+	Nonsense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS3	64759	broad.mit.edu	37	7	47409037	47409037	+	Silent	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7574012	7574012	+	Frame_Shift_Del	DEL	C	-	-	rs17882252		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPM3	7170	broad.mit.edu	37	1	154155389	154155389	+	Intron	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1418189	1418189	+	Silent	SNP	G	A	A	rs61758084		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20138064	20138064	+	5'Flank	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM31	11074	broad.mit.edu	37	6	30080126	30080126	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM47	91107	broad.mit.edu	37	17	73870608	73870608	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM69	140691	broad.mit.edu	37	15	45052006	45052006	+	Silent	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRMT1	55621	broad.mit.edu	37	19	13220550	13220550	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC3	7222	broad.mit.edu	37	4	122803410	122803410	+	Intron	SNP	T	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31770030	31770030	+	Silent	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSKU	25987	broad.mit.edu	37	11	76507338	76507338	+	Silent	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN8	7103	broad.mit.edu	37	12	71531774	71531774	+	Missense_Mutation	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179468736	179468736	+	Silent	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179632674	179632674	+	Intron	SNP	A	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTYH3	80727	broad.mit.edu	37	7	2697955	2697955	+	Missense_Mutation	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB4	10382	broad.mit.edu	37	19	6495313	6495313	+	Silent	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXK	7294	broad.mit.edu	37	4	48081936	48081936	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNRD2	10587	broad.mit.edu	37	22	19865699	19865699	+	Silent	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA3	9039	broad.mit.edu	37	3	69106387	69106387	+	Intron	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA7	7318	broad.mit.edu	37	3	49845790	49845790	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR5	51366	broad.mit.edu	37	8	103289239	103289240	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A5	54579	broad.mit.edu	37	2	234622615	234622615	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B15	7366	broad.mit.edu	37	4	69536161	69536161	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPK3A	7380	broad.mit.edu	37	22	45689226	45689226	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216062258	216062258	+	Missense_Mutation	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216348701	216348701	+	Nonsense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	145156988	145156988	+	Missense_Mutation	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42396943	42396943	+	IGR	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42599663	42599663	+	IGR	SNP	T	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52487718	52487718	+	IGR	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	97354525	97354525	+	IGR	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124109148	124109148	+	IGR	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	15010091	15010091	+	IGR	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55070340	55070340	+	IGR	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	91683043	91683043	+	IGR	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80704403	80704403	+	IGR	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	48338476	48338476	+	IGR	SNP	T	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90015220	90015220	+	IGR	SNP	T	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	60864619	60864619	+	IGR	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20093019	20093019	+	IGR	SNP	T	C	C	rs148549991	by1000genomes	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22780757	22780757	+	IGR	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	79852223	79852223	+	IGR	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52030659	52030659	+	IGR	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	15271116	15271116	+	IGR	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	44388141	44388141	+	IGR	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121484122	121484122	+	IGR	SNP	G	T	T	rs150777555		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121484720	121484721	+	IGR	INS	-	G	G	rs2200142		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	13145209	13145209	+	IGR	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166716750	166716750	+	IGR	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192216215	192216215	+	IGR	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	240136231	240136231	+	IGR	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	89859718	89859718	+	IGR	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	31278444	31278444	+	IGR	SNP	T	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	36500532	36500532	+	IGR	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	21425449	21425449	+	IGR	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34985790	34985790	+	IGR	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162359283	162359283	+	IGR	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	192746131	192746131	+	IGR	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	125509061	125509061	+	IGR	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	14616117	14616117	+	IGR	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	158327356	158327356	+	IGR	SNP	A	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	197838375	197838375	+	IGR	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87100419	87100419	+	IGR	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	115635606	115635606	+	IGR	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116842207	116842207	+	IGR	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165577353	165577353	+	IGR	SNP	T	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	172190060	172190060	+	IGR	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	39719977	39719977	+	IGR	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	20252938	20252938	+	IGR	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	148888140	148888140	+	IGR	SNP	T	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	143049573	143049573	+	IGR	SNP	T	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	61851248	61851248	+	IGR	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84673290	84673290	+	IGR	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	87317711	87317711	+	IGR	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13842706	13842706	+	IGR	SNP	T	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAT1	10493	broad.mit.edu	37	17	41170820	41170820	+	Intron	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS25	84313	broad.mit.edu	37	17	40925994	40925994	+	Intron	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WAPAL	23063	broad.mit.edu	37	10	88213425	88213442	+	In_Frame_Del	DEL	TTAAATTAAGCAACACCC	-	-			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR28	135886	broad.mit.edu	37	7	73280192	73280193	+	Frame_Shift_Del	DEL	CC	-	-			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85687162	85687162	+	Silent	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK1	65125	broad.mit.edu	37	12	989022	989022	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WRB	7485	broad.mit.edu	37	21	40768888	40768888	+	3'UTR	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPC	7508	broad.mit.edu	37	3	14200205	14200205	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAK	51776	broad.mit.edu	37	2	174097224	174097224	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100345986	100345986	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC11	23318	broad.mit.edu	37	1	52940851	52940851	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAT	57623	broad.mit.edu	37	8	135612651	135612651	+	Intron	SNP	G	T	T	rs77093412	by1000genomes	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFC3H1	196441	broad.mit.edu	37	12	72036431	72036431	+	Intron	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP36L1	677	broad.mit.edu	37	14	69256498	69256498	+	Nonsense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP64	55734	broad.mit.edu	37	20	50701362	50701362	+	Silent	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ1	57178	broad.mit.edu	37	10	80862991	80862991	+	Intron	SNP	G	A	A	rs117089629	by1000genomes	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF167	55888	broad.mit.edu	37	3	44619618	44619618	+	Intron	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF195	7748	broad.mit.edu	37	11	3380601	3380601	+	Missense_Mutation	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF200	7752	broad.mit.edu	37	16	3273906	3273906	+	Silent	SNP	G	T	T	rs138531369	byFrequency	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22257815	22257815	+	Intron	SNP	A	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF286A	57335	broad.mit.edu	37	17	15619791	15619791	+	Silent	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF333	84449	broad.mit.edu	37	19	14830168	14830168	+	3'UTR	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF397OS	100101467	broad.mit.edu	37	18	32834195	32834195	+	Missense_Mutation	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF398	57541	broad.mit.edu	37	7	148873685	148873685	+	Intron	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF434	54925	broad.mit.edu	37	16	3433615	3433615	+	Missense_Mutation	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57188673	57188673	+	Nonsense_Mutation	SNP	G	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF534	147658	broad.mit.edu	37	19	52937149	52937149	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF566	84924	broad.mit.edu	37	19	36940775	36940775	+	Missense_Mutation	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF622	90441	broad.mit.edu	37	5	16465058	16465059	+	Intron	DEL	AC	-	-			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF623	9831	broad.mit.edu	37	8	144733502	144733502	+	Missense_Mutation	SNP	A	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF700	90592	broad.mit.edu	37	19	12060174	12060174	+	Silent	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF792	126375	broad.mit.edu	37	19	35449408	35449408	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF878	729747	broad.mit.edu	37	19	12155687	12155687	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF880	400713	broad.mit.edu	37	19	52876544	52876544	+	Intron	SNP	T	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNHIT1	10467	broad.mit.edu	37	7	100861385	100861385	+	5'UTR	SNP	A	C	C			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN22	342945	broad.mit.edu	37	19	58850179	58850179	+	Silent	SNP	G	A	A	rs139283341	byFrequency	TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN29	146050	broad.mit.edu	37	15	43661216	43661216	+	Missense_Mutation	SNP	C	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZWINT	11130	broad.mit.edu	37	10	58120024	58120024	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZEF1	23140	broad.mit.edu	37	17	3955340	3955340	+	Missense_Mutation	SNP	C	A	A	rs147734356		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	134621946	134621946	+	Silent	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	32885545	32885545	+	5'Flank	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	43625789	43625789	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	179557698	179557698	+	5'Flank	SNP	G	A	A			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	42504210	42504210	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89987141	89987141	+	Intron	SNP	C	T	T			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	86693778	86693778	+	Intron	SNP	C	G	G			TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
