Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
CASZ1	54897	broad.mit.edu	36	1	10636042	10636042	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	10636042	10636042	CASZ1	1	G	G	C	42
ST6GALNAC3	256435	broad.mit.edu	36	1	76650491	76650491	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	76650491	76650491	ST6GALNAC3	1	T	T	C	61
SEMA6C	10500	broad.mit.edu	36	1	149377178	149377178	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	149377178	149377178	SEMA6C	1	G	G	C	38
PVRL4	81607	broad.mit.edu	36	1	159314045	159314045	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	159314045	159314045	PVRL4	1	G	G	T	48
LPGAT1	9926	broad.mit.edu	36	1	210023255	210023255	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	210023255	210023255	LPGAT1	1	C	C	G	29
HSPA14	51182	broad.mit.edu	36	10	14937856	14937856	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	14937856	14937856	HSPA14	10	G	G	C	45
TCF7L2	6934	broad.mit.edu	36	10	114895812	114895812	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	114895812	114895812	TCF7L2	10	C	C	A	22
CLNS1A	1207	broad.mit.edu	36	11	77018591	77018591	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	77018591	77018591	CLNS1A	11	G	G	A	39
PKNOX2	63876	broad.mit.edu	36	11	124726450	124726450	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	124726450	124726450	PKNOX2	11	G	G	C	45
A2ML1	144568	broad.mit.edu	36	12	8882236	8882236	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	8882236	8882236	A2ML1	12	T	T	A	51
OSBPL8	114882	broad.mit.edu	36	12	75315633	75315633	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	75315633	75315633	OSBPL8	12	G	G	T	35
PLA2G4F	255189	broad.mit.edu	36	15	40229594	40229594	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	40229594	40229594	PLA2G4F	15	C	C	G	24
C15orf42	90381	broad.mit.edu	36	15	87968998	87968998	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	87968998	87968998	C15orf42	15	G	G	C	36
WDR93	56964	broad.mit.edu	36	15	88077313	88077313	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	88077313	88077313	WDR93	15	C	C	A	31
DNAH3	55567	broad.mit.edu	36	16	20882913	20882913	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	20882913	20882913	DNAH3	16	G	G	A	41
JMJD5	79831	broad.mit.edu	36	16	27129149	27129149	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	27129149	27129149	JMJD5	16	C	C	T	27
ANKFY1	51479	broad.mit.edu	36	17	4092424	4092424	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	4092424	4092424	ANKFY1	17	G	G	A	34
TP53	7157	broad.mit.edu	36	17	7518964	7518964	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	7518964	7518964	TP53	17	C	C	A	30
ADAP2	55803	broad.mit.edu	36	17	26277992	26277992	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	26277992	26277992	ADAP2	17	C	C	T	24
PSMD11	5717	broad.mit.edu	36	17	27815669	27815669	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	27815669	27815669	PSMD11	17	G	G	A	48
GPR179	440435	broad.mit.edu	36	17	33748892	33748892	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	33748892	33748892	GPR179	17	G	G	C	45
CTAGE1	64693	broad.mit.edu	36	18	18251045	18251045	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	18251045	18251045	CTAGE1	18	T	T	C	56
GP6	51206	broad.mit.edu	36	19	60217703	60217703	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	60217703	60217703	GP6	19	C	C	T	25
EPAS1	2034	broad.mit.edu	36	2	46459304	46459304	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	46459304	46459304	EPAS1	2	A	A	G	4
IL18R1	8809	broad.mit.edu	36	2	102350806	102350806	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	102350806	102350806	IL18R1	2	G	G	A	45
NCKAP5	344148	broad.mit.edu	36	2	133257527	133257527	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	133257527	133257527	NCKAP5	2	C	C	A	20
TTN	7273	broad.mit.edu	36	2	179123136	179123136	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	179123136	179123136	TTN	2	T	T	A	60
TMPRSS2	7113	broad.mit.edu	36	21	41791942	41791942	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	41791942	41791942	TMPRSS2	21	C	C	G	29
TRPM2	7226	broad.mit.edu	36	21	44623320	44623320	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	44623320	44623320	TRPM2	21	G	G	A	38
GRAMD1C	54762	broad.mit.edu	36	3	115105755	115105755	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	115105755	115105755	GRAMD1C	3	A	A	G	4
STXBP5L	9515	broad.mit.edu	36	3	122246975	122246975	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	122246975	122246975	STXBP5L	3	G	G	T	46
MAGEF1	64110	broad.mit.edu	36	3	185912104	185912104	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	185912104	185912104	MAGEF1	3	A	A	T	5
LEPREL1	55214	broad.mit.edu	36	3	191320765	191320765	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	191320765	191320765	LEPREL1	3	G	G	C	35
UBE2CBP	90025	broad.mit.edu	36	6	83723832	83723832	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	83723832	83723832	UBE2CBP	6	G	G	A	46
HEATR2	54919	broad.mit.edu	36	7	791754	791754	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	791754	791754	HEATR2	7	C	C	A	23
GTF2IRD2	84163	broad.mit.edu	36	7	73849753	73849753	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	73849753	73849753	GTF2IRD2	7	C	C	T	29
MUC17	140453	broad.mit.edu	36	7	100470834	100470834	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	100470834	100470834	MUC17	7	T	T	A	53
NRG1	3084	broad.mit.edu	36	8	32741319	32741319	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	32741319	32741319	NRG1	8	C	C	G	22
ANK1	286	broad.mit.edu	36	8	41662847	41662847	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	41662847	41662847	ANK1	8	C	C	T	19
ZNF16	7564	broad.mit.edu	36	8	146128093	146128093	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	146128093	146128093	ZNF16	8	C	C	A	17
ZNF16	7564	broad.mit.edu	36	8	146128165	146128165	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	146128165	146128165	ZNF16	8	C	C	G	22
WNK3	65267	broad.mit.edu	36	X	54276084	54276084	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	54276084	54276084	WNK3	23	G	G	A	47
KIAA2022	340533	broad.mit.edu	36	X	73877895	73877895	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	73877895	73877895	KIAA2022	23	C	C	T	23
COLEC12	81035	broad.mit.edu	36	18	324971	324972	+	Frame_Shift_Ins	INS	-	G	-	novel	Unknown	TCGA-61-2002-01	TCGA-61-2002-11							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Ins	INS	324971	324972	COLEC12	18	-	G	-	23
