Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA12	26154	broad.mit.edu	37	2	215855765	215855765	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215866486	215866486	+	Intron	DEL	A	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA3	21	broad.mit.edu	37	16	2348616	2348616	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	67012550	67012550	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87168622	87168622	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87072909	87072909	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20685729	20685729	+	5'Flank	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABL2	27	broad.mit.edu	37	1	179077769	179077769	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABL2	27	broad.mit.edu	37	1	179191281	179191281	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACE	1636	broad.mit.edu	37	17	61562712	61562712	+	Silent	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT7	11332	broad.mit.edu	37	1	6393646	6393646	+	Intron	SNP	A	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSF2	80221	broad.mit.edu	37	17	48538982	48538982	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20471395	20471395	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN1	87	broad.mit.edu	37	14	69346732	69346732	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVR2A	92	broad.mit.edu	37	2	148653787	148653787	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVRL1	94	broad.mit.edu	37	12	52312926	52312926	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM11	4185	broad.mit.edu	37	17	42854982	42854982	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM11	4185	broad.mit.edu	37	17	42856514	42856514	+	Intron	DEL	A	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM18	8749	broad.mit.edu	37	8	39521276	39521276	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM21P1	145241	broad.mit.edu	37	14	70713090	70713090	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM22	53616	broad.mit.edu	37	7	87763675	87763675	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106511980	106511980	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33658454	33658454	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33683200	33683200	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS13	11093	broad.mit.edu	37	9	136282720	136282720	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5191879	5191880	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77398154	77398154	+	Silent	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS19	171019	broad.mit.edu	37	5	129037059	129037059	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43823488	43823488	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43847848	43847848	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73205255	73205255	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73280705	73280705	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS7	11173	broad.mit.edu	37	15	79051880	79051880	+	Silent	SNP	C	T	T	rs1045121	by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18662191	18662191	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL4	54507	broad.mit.edu	37	1	150526056	150526056	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAT1	23536	broad.mit.edu	37	16	75642252	75642252	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADA	100	broad.mit.edu	37	20	43253074	43253074	+	Intron	DEL	C	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCK4	79934	broad.mit.edu	37	19	41198798	41198798	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167805893	167805893	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123167195	123167195	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY7	113	broad.mit.edu	37	16	50325758	50325758	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY7	113	broad.mit.edu	37	16	50338951	50338951	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH6	130	broad.mit.edu	37	4	100126133	100126133	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADNP2	22850	broad.mit.edu	37	18	77894491	77894491	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRA1D	146	broad.mit.edu	37	20	4228885	4228885	+	Silent	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRB3	155	broad.mit.edu	37	8	37821624	37821624	+	3'UTR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP1	116987	broad.mit.edu	37	2	236949415	236949415	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPHD1	123688	broad.mit.edu	37	15	78807396	78807396	+	Nonsense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCTF1	25909	broad.mit.edu	37	1	247004094	247004094	+	3'UTR	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHI1	54806	broad.mit.edu	37	6	135778795	135778795	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP12	9590	broad.mit.edu	37	6	151646946	151646946	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALKBH3	221120	broad.mit.edu	37	11	43905699	43905699	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMOT	154796	broad.mit.edu	37	X	112022354	112022354	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC1	64682	broad.mit.edu	37	2	112604604	112604604	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114257162	114257162	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD17	26057	broad.mit.edu	37	4	74008305	74008305	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD17	26057	broad.mit.edu	37	4	74021310	74021310	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD27	84079	broad.mit.edu	37	19	33122400	33122400	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37438556	37438556	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14851733	14851733	+	Nonsense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD36	375248	broad.mit.edu	37	2	97784159	97784159	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD56	345079	broad.mit.edu	37	4	77816557	77816557	+	3'UTR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKZF1	55139	broad.mit.edu	37	2	220094862	220094862	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANLN	54443	broad.mit.edu	37	7	36438966	36438966	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5757052	5757052	+	Intron	SNP	G	A	A	rs143337216	by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101510309	101510309	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO6	196527	broad.mit.edu	37	12	45781891	45781891	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR1	84168	broad.mit.edu	37	2	69298889	69298889	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR1	84168	broad.mit.edu	37	2	69420348	69420348	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B2	8120	broad.mit.edu	37	15	83333147	83333147	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3D	140564	broad.mit.edu	37	22	39410221	39410221	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3F	200316	broad.mit.edu	37	22	39448532	39448532	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQR	9716	broad.mit.edu	37	15	35240475	35240475	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP3	64411	broad.mit.edu	37	5	141051750	141051750	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARGFX	503582	broad.mit.edu	37	3	121304000	121304000	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP1	392	broad.mit.edu	37	11	46702262	46702262	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP31	57514	broad.mit.edu	37	3	119133764	119133764	+	Silent	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11272834	11272834	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156947959	156947959	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF15	22899	broad.mit.edu	37	17	8221893	8221893	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23247946	23247946	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARNTL2	56938	broad.mit.edu	37	12	27553768	27553768	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARRB1	408	broad.mit.edu	37	11	74989622	74989622	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARRDC3	57561	broad.mit.edu	37	5	90670930	90670930	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB3	51130	broad.mit.edu	37	2	53955772	53955772	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB5	140458	broad.mit.edu	37	4	177142508	177142508	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB8	140461	broad.mit.edu	37	12	48543554	48543554	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASFMR1	100126270	broad.mit.edu	37	X	147003537	147003537	+	5'UTR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176992651	176992651	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119414180	119414180	+	Intron	DEL	G	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD2	29028	broad.mit.edu	37	8	124384103	124384103	+	Intron	SNP	T	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG3	64422	broad.mit.edu	37	3	112251469	112251469	+	3'UTR	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATIC	471	broad.mit.edu	37	2	216197222	216197222	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10A	57194	broad.mit.edu	37	15	25936908	25936908	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A2	477	broad.mit.edu	37	1	160091192	160091192	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B4	493	broad.mit.edu	37	1	203669880	203669880	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP5EP2	432369	broad.mit.edu	37	13	28519467	28519467	+	RNA	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0A4	50617	broad.mit.edu	37	7	138430117	138430117	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0D2	245972	broad.mit.edu	37	8	87153747	87153747	+	Nonsense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26114522	26114522	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B1	5205	broad.mit.edu	37	18	55362865	55362865	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP9B	374868	broad.mit.edu	37	18	77137082	77137082	+	Intron	SNP	A	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BACH1	571	broad.mit.edu	37	21	30698503	30698503	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69666701	69666701	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAIAP3	8938	broad.mit.edu	37	16	1398189	1398189	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33313629	33313629	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAM	4059	broad.mit.edu	37	19	45315594	45315594	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS1	8537	broad.mit.edu	37	20	52601782	52601782	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCLAF1	9774	broad.mit.edu	37	6	136599805	136599805	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32743962	32743962	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC8	112401	broad.mit.edu	37	19	53793083	53793083	+	Missense_Mutation	SNP	C	A	A	rs138004934	byFrequency	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPER	168667	broad.mit.edu	37	7	34192785	34192785	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOD1	91272	broad.mit.edu	37	5	173035135	173035135	+	3'UTR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRAF	673	broad.mit.edu	37	7	140481323	140481323	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCA2	675	broad.mit.edu	37	13	32958909	32958909	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRF1	2972	broad.mit.edu	37	14	105685408	105685408	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRF1	2972	broad.mit.edu	37	14	105685410	105685410	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRSK1	84446	broad.mit.edu	37	19	55813338	55813338	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD3	254065	broad.mit.edu	37	X	79946453	79946453	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTAF1	9044	broad.mit.edu	37	10	93778686	93778686	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf120	399814	broad.mit.edu	37	10	124457454	124457454	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf128	170371	broad.mit.edu	37	10	50373876	50373876	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf128	170371	broad.mit.edu	37	10	50396414	50396414	+	5'Flank	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf82	143379	broad.mit.edu	37	10	118427679	118427679	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf41	25758	broad.mit.edu	37	11	33596522	33596522	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf70	85016	broad.mit.edu	37	11	101946661	101946661	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf48	55010	broad.mit.edu	37	12	102591218	102591218	+	3'UTR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf50	160419	broad.mit.edu	37	12	88379940	88379940	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf63	374467	broad.mit.edu	37	12	97045291	97045291	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf1	57213	broad.mit.edu	37	13	50510295	50510295	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf68	283600	broad.mit.edu	37	14	100795657	100795658	+	Intron	DNP	CG	TT	TT			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf27	123591	broad.mit.edu	37	15	76495979	76495979	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf51	196968	broad.mit.edu	37	15	100331184	100331184	+	RNA	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf58	64755	broad.mit.edu	37	16	31505167	31505167	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf67	339210	broad.mit.edu	37	17	54893250	54893250	+	5'UTR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf77	146723	broad.mit.edu	37	17	72588362	72588362	+	Silent	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30950216	30950216	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf45	85019	broad.mit.edu	37	18	20889479	20889480	+	Intron	INS	-	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf45	374877	broad.mit.edu	37	19	7566259	7566259	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf47	126526	broad.mit.edu	37	19	40842091	40842091	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf6	91304	broad.mit.edu	37	19	1011723	1011723	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QA	712	broad.mit.edu	37	1	22964187	22964187	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf107	27042	broad.mit.edu	37	1	210006653	210006653	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf9	51430	broad.mit.edu	37	1	172501593	172501593	+	5'Flank	SNP	T	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf103	24141	broad.mit.edu	37	20	9498797	9498797	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf185	359710	broad.mit.edu	37	20	31649701	31649701	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf3	57136	broad.mit.edu	37	20	24950143	24950143	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf4	25980	broad.mit.edu	37	20	34843463	34843463	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf26	84319	broad.mit.edu	37	3	99891162	99891162	+	Silent	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf21	55345	broad.mit.edu	37	4	113541292	113541292	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf35	85438	broad.mit.edu	37	4	71201991	71201991	+	3'UTR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf37	285555	broad.mit.edu	37	4	98947242	98947242	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf54	63920	broad.mit.edu	37	5	159822592	159822592	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf54	63920	broad.mit.edu	37	5	159822598	159822598	+	Intron	SNP	T	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf56	441108	broad.mit.edu	37	5	131796143	131796143	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41199779	41199779	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf127	340204	broad.mit.edu	37	6	35755491	35755491	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf142	90523	broad.mit.edu	37	6	53883743	53883743	+	5'UTR	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf57	136288	broad.mit.edu	37	7	48081122	48081122	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120767204	120767204	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf66	154907	broad.mit.edu	37	7	108524480	108524480	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8B	732	broad.mit.edu	37	1	57431682	57431682	+	5'UTR	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf135	138255	broad.mit.edu	37	9	72472976	72472976	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2794992	2794992	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181620564	181620564	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181702074	181702074	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49068815	49068815	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1G	8913	broad.mit.edu	37	17	48695178	48695178	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	40066860	40066860	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201018109	201018109	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	55107852	55107852	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB4	785	broad.mit.edu	37	2	152729043	152729043	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS2	93664	broad.mit.edu	37	7	121985699	121985699	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAGE1	285782	broad.mit.edu	37	6	7339849	7339849	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAGE1	285782	broad.mit.edu	37	6	7341318	7341318	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2D	817	broad.mit.edu	37	4	114458639	114458639	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD14	79092	broad.mit.edu	37	17	78163574	78163574	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARS	833	broad.mit.edu	37	11	3028040	3028040	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC5	57082	broad.mit.edu	37	15	40901118	40901118	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP1	834	broad.mit.edu	37	11	104899699	104899699	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASQ2	845	broad.mit.edu	37	1	116244100	116244100	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBFA2T2	9139	broad.mit.edu	37	20	32194618	32194618	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBE1	147372	broad.mit.edu	37	18	57107102	57107102	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC142	84865	broad.mit.edu	37	2	74709006	74709006	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC147	159686	broad.mit.edu	37	10	106118015	106118015	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC39	339829	broad.mit.edu	37	3	180381775	180381775	+	Splice_Site	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC70	83446	broad.mit.edu	37	13	52439526	52439526	+	Silent	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNK	8812	broad.mit.edu	37	14	99973371	99973371	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT4	10575	broad.mit.edu	37	2	62099829	62099829	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD109	135228	broad.mit.edu	37	6	74491064	74491064	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD209	30835	broad.mit.edu	37	19	7805704	7805704	+	3'UTR	DEL	G	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD69	969	broad.mit.edu	37	12	9907174	9907174	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC14A	8556	broad.mit.edu	37	1	100960517	100960517	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21751826	21751826	+	3'UTR	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19747198	19747198	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25532157	25532157	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH4	1002	broad.mit.edu	37	20	60348202	60348202	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61747993	61747993	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR1	92211	broad.mit.edu	37	10	85971993	85971993	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK11B	984	broad.mit.edu	37	1	1647842	1647842	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK6	1021	broad.mit.edu	37	7	92300767	92300767	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDR2	1039	broad.mit.edu	37	16	22385529	22385529	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDRT15	146822	broad.mit.edu	37	17	14140072	14140072	+	Nonsense_Mutation	SNP	G	A	A	rs147270904	byFrequency	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEL	1056	broad.mit.edu	37	9	135940281	135940281	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP192	55125	broad.mit.edu	37	18	13073170	13073171	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES7	221223	broad.mit.edu	37	16	55908877	55908877	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196645149	196645149	+	Silent	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196646761	196646761	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196706113	196706113	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFLAR	8837	broad.mit.edu	37	2	202025625	202025625	+	Silent	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50824643	50824643	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHCHD5	84269	broad.mit.edu	37	2	113343710	113343710	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6191633	6191633	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6194573	6194573	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD7	55636	broad.mit.edu	37	8	61767075	61767075	+	Nonsense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHFR	55743	broad.mit.edu	37	12	133448864	133448864	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHKA	1119	broad.mit.edu	37	11	67864518	67864518	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRDL1	91851	broad.mit.edu	37	X	109924833	109924833	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIAPIN1	57019	broad.mit.edu	37	16	57474532	57474532	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIB3	117286	broad.mit.edu	37	19	16280593	16280593	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN6	1185	broad.mit.edu	37	1	11894513	11894513	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN18	51208	broad.mit.edu	37	3	137729351	137729351	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLN6	54982	broad.mit.edu	37	15	68504182	68504182	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTC	1213	broad.mit.edu	37	17	57724917	57724917	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS2	134829	broad.mit.edu	37	6	123384732	123384732	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA4	1262	broad.mit.edu	37	11	6263036	6263036	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87666264	87666264	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT10	25904	broad.mit.edu	37	3	32801156	32801156	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTFR	1271	broad.mit.edu	37	9	34552969	34552969	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76481991	76481991	+	Silent	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76528697	76528697	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG5	10466	broad.mit.edu	37	7	107002873	107002873	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121267478	121267478	+	Splice_Site	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70672840	70672840	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139631586	139631586	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139736919	139736919	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139809177	139809177	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86252065	86252065	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109969263	109969263	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7420472	7420472	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110831469	110831469	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A4	1286	broad.mit.edu	37	2	227920787	227920787	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107840652	107840652	+	Missense_Mutation	SNP	G	A	A	rs104886126		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107418540	107418540	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238281044	238281044	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COQ10B	80219	broad.mit.edu	37	2	198327273	198327273	+	Nonsense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COQ7	10229	broad.mit.edu	37	16	19078933	19078933	+	5'UTR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COQ7	10229	broad.mit.edu	37	16	19086859	19086859	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO6	84940	broad.mit.edu	37	17	27946052	27946052	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX4I2	84701	broad.mit.edu	37	20	30231194	30231194	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA6	57094	broad.mit.edu	37	8	68481711	68481711	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPO	130749	broad.mit.edu	37	2	207814375	207814375	+	Nonsense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPVL	54504	broad.mit.edu	37	7	29103813	29103813	+	Nonsense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM1	56265	broad.mit.edu	37	20	2775946	2775946	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRELD1	78987	broad.mit.edu	37	3	9984414	9984414	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIM1	51232	broad.mit.edu	37	2	36726281	36726281	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIP3	401262	broad.mit.edu	37	6	43274041	43274041	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRMP1	1400	broad.mit.edu	37	4	5844728	5844728	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCC	9696	broad.mit.edu	37	1	17266539	17266539	+	Missense_Mutation	SNP	G	A	A	rs138094629		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYL1	51084	broad.mit.edu	37	13	21014051	21014051	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSGALNACT2	55454	broad.mit.edu	37	10	43651103	43651103	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34087803	34087803	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113395820	113395820	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113697760	113697760	+	Missense_Mutation	SNP	G	A	A	rs150314286	byFrequency	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113812608	113812608	+	Intron	SNP	A	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114031359	114031359	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114290752	114290752	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK2A2	1459	broad.mit.edu	37	16	58197952	58197952	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CT45A1	541466	broad.mit.edu	37	X	134856616	134856616	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11385018	11385018	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11412060	11412060	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNS	1497	broad.mit.edu	37	17	3552109	3552109	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL7	9820	broad.mit.edu	37	6	43011260	43011260	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43152288	43152288	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX1	1523	broad.mit.edu	37	7	101839884	101839884	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXADRP2	646243	broad.mit.edu	37	15	22015751	22015751	+	3'UTR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	36003982	36003982	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf48	54967	broad.mit.edu	37	X	134303771	134303771	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf59	286464	broad.mit.edu	37	X	36091257	36091257	+	Silent	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYB5R2	51700	broad.mit.edu	37	11	7690912	7690912	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP1A1	1543	broad.mit.edu	37	15	75013543	75013543	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP26B1	56603	broad.mit.edu	37	2	72361919	72361919	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP26B1	56603	broad.mit.edu	37	2	72362137	72362137	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2E1	1571	broad.mit.edu	37	10	135345697	135345697	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP46A1	10858	broad.mit.edu	37	14	100166391	100166391	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYYR1	116159	broad.mit.edu	37	21	27840721	27840721	+	3'UTR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	86054046	86054046	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	86054054	86054054	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L2	340578	broad.mit.edu	37	X	125298530	125298530	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88886241	88886241	+	5'UTR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50451550	50451550	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155241433	155241433	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCK	1633	broad.mit.edu	37	4	71889207	71889207	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCPS	28960	broad.mit.edu	37	11	126215448	126215448	+	Silent	SNP	C	G	G	rs143294413	byFrequency	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCUN1D4	23142	broad.mit.edu	37	4	52740465	52740465	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDAH2	23564	broad.mit.edu	37	6	31696006	31696006	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR2	4921	broad.mit.edu	37	1	162725667	162725667	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX10	1662	broad.mit.edu	37	11	108577363	108577363	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX25	29118	broad.mit.edu	37	11	125778220	125778220	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX26B	203522	broad.mit.edu	37	X	134711002	134711002	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX53	168400	broad.mit.edu	37	X	23019064	23019064	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60	55601	broad.mit.edu	37	4	169190183	169190183	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1B	163486	broad.mit.edu	37	1	197643291	197643291	+	Silent	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC7	91614	broad.mit.edu	37	11	33053077	33053077	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFFB	1677	broad.mit.edu	37	1	3774281	3774281	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNB31	25861	broad.mit.edu	37	9	117188456	117188456	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKA	1606	broad.mit.edu	37	12	56347165	56347165	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKQ	1609	broad.mit.edu	37	4	958925	958925	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHODH	1723	broad.mit.edu	37	16	72040303	72040303	+	5'Flank	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX35	60625	broad.mit.edu	37	20	37612440	37612440	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH2	1730	broad.mit.edu	37	X	96724772	96724772	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIS3	22894	broad.mit.edu	37	13	73333982	73333982	+	Frame_Shift_Del	DEL	T	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISC1	27185	broad.mit.edu	37	1	231935828	231935828	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISP1	84976	broad.mit.edu	37	1	223178964	223178964	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKFZp686A1627	266695	broad.mit.edu	37	13	19622120	19622120	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLD	1738	broad.mit.edu	37	7	107533693	107533693	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83183882	83183882	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	84245910	84245910	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32305815	32305815	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32503158	32503158	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMKN	93099	broad.mit.edu	37	19	36003433	36003433	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL1	1657	broad.mit.edu	37	5	118485771	118485771	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21640827	21640827	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21742355	21742355	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21827034	21827034	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21092771	21092771	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13824331	13824331	+	Frame_Shift_Del	DEL	G	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196892570	196892570	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38816408	38816408	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38881720	38881720	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11622804	11622804	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11672669	11672669	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI1	27019	broad.mit.edu	37	9	34500874	34500874	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC10	54431	broad.mit.edu	37	2	183601114	183601114	+	Splice_Site	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC21	134218	broad.mit.edu	37	5	34946081	34946081	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMBP	23268	broad.mit.edu	37	10	101716089	101716089	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225657747	225657747	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169509880	169509880	+	3'UTR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK3	1795	broad.mit.edu	37	3	51264527	51264527	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK3	1795	broad.mit.edu	37	3	51284221	51284221	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP3	10072	broad.mit.edu	37	11	66253943	66253943	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP4	1803	broad.mit.edu	37	2	162891790	162891790	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPPA2	151871	broad.mit.edu	37	3	109023603	109023603	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P1	554236	broad.mit.edu	37	7	35145650	35145650	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P2	349152	broad.mit.edu	37	7	102915919	102915919	+	5'UTR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L3	147991	broad.mit.edu	37	19	32945754	32945754	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL5	56896	broad.mit.edu	37	2	27147680	27147680	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC1	1823	broad.mit.edu	37	18	28713983	28713983	+	Nonsense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSEL	92126	broad.mit.edu	37	18	65179982	65179982	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG1	1828	broad.mit.edu	37	18	28911745	28911745	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56357950	56357950	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56425222	56425222	+	Splice_Site	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUS4L	11062	broad.mit.edu	37	7	107216865	107216865	+	Silent	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP27	92235	broad.mit.edu	37	1	167088687	167088687	+	Silent	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP27	92235	broad.mit.edu	37	1	167096318	167096318	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F7	144455	broad.mit.edu	37	12	77458228	77458228	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EAF2	55840	broad.mit.edu	37	3	121554259	121554259	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECT2L	345930	broad.mit.edu	37	6	139135620	139135620	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDN3	1908	broad.mit.edu	37	20	57899558	57899558	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF2K	29904	broad.mit.edu	37	16	22276209	22276209	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C1	26523	broad.mit.edu	37	1	36358069	36358069	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C1	26523	broad.mit.edu	37	1	36384872	36384873	+	Intron	DNP	GG	TT	TT			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C2	27161	broad.mit.edu	37	8	141549520	141549520	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C4	192670	broad.mit.edu	37	1	36297282	36297282	+	Intron	SNP	T	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4EBP1	1978	broad.mit.edu	37	8	37914836	37914836	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF5B	9669	broad.mit.edu	37	2	99976702	99976702	+	Silent	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL3	1995	broad.mit.edu	37	19	11568842	11568843	+	Intron	DNP	CG	AT	AT			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELTD1	64123	broad.mit.edu	37	1	79403492	79403492	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR2	30817	broad.mit.edu	37	19	14857695	14857695	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPEP	2028	broad.mit.edu	37	4	111441350	111441350	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132476772	132476772	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L1	2036	broad.mit.edu	37	20	34782249	34782249	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L3	23136	broad.mit.edu	37	18	5397212	5397212	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA10	284656	broad.mit.edu	37	1	38183908	38183908	+	3'UTR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134920490	134920490	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPYC	1833	broad.mit.edu	37	12	91364013	91364013	+	Intron	SNP	A	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EREG	2069	broad.mit.edu	37	4	75246782	75246782	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERGIC2	51290	broad.mit.edu	37	12	29524531	29524531	+	Silent	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	216824369	216824369	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETS1	2113	broad.mit.edu	37	11	128360370	128360370	+	Nonsense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV1	2115	broad.mit.edu	37	7	13949253	13949253	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVPL	2125	broad.mit.edu	37	17	74023232	74023232	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC2	55770	broad.mit.edu	37	6	637563	637563	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXT2	2132	broad.mit.edu	37	11	44129611	44129611	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66053950	66053950	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13B	2165	broad.mit.edu	37	1	197019821	197019821	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13B	2165	broad.mit.edu	37	1	197029536	197029536	+	Nonsense_Mutation	SNP	G	T	T	rs5994	byFrequency;by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FADS2	9415	broad.mit.edu	37	11	61615530	61615530	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM126A	84668	broad.mit.edu	37	7	23030552	23030552	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM129A	116496	broad.mit.edu	37	1	184787670	184787670	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM169A	26049	broad.mit.edu	37	5	74096754	74096754	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM179B	23116	broad.mit.edu	37	14	45468632	45468632	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM20A	54757	broad.mit.edu	37	17	66550910	66550910	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34149272	34149272	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47C	442444	broad.mit.edu	37	X	37028890	37028890	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177199316	177199316	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM60A	58516	broad.mit.edu	37	12	31435745	31435745	+	Silent	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65A	79567	broad.mit.edu	37	16	67574538	67574538	+	Silent	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM76B	143684	broad.mit.edu	37	11	95516202	95516202	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83C	128876	broad.mit.edu	37	20	33874942	33874942	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM91A1	157769	broad.mit.edu	37	8	124811672	124811672	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCB	2187	broad.mit.edu	37	X	14871431	14871431	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAR2	55711	broad.mit.edu	37	12	29463958	29463958	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8174681	8174681	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO18	84893	broad.mit.edu	37	10	5950825	5950825	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXW2	26190	broad.mit.edu	37	9	123526816	123526816	+	3'UTR	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCAMR	83953	broad.mit.edu	37	1	207135748	207135748	+	Silent	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157772420	157772420	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125034045	125034045	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108120974	108120974	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEZ1	9638	broad.mit.edu	37	11	125318323	125318323	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEZ1	9638	broad.mit.edu	37	11	125351580	125351580	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEZF1	389549	broad.mit.edu	37	7	121942957	121942957	+	Frame_Shift_Del	DEL	C	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGB	2244	broad.mit.edu	37	4	155489050	155489050	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR2	2263	broad.mit.edu	37	10	123263528	123263528	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLAD1	80308	broad.mit.edu	37	1	154962197	154962197	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84605842	84605842	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO2	2327	broad.mit.edu	37	1	171178107	171178107	+	3'UTR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159646436	159646436	+	Intron	SNP	A	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89431852	89431852	+	3'UTR	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLR4	390243	broad.mit.edu	37	11	94039017	94039017	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRK	2444	broad.mit.edu	37	6	116289620	116289620	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12735610	12735610	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRZB	2487	broad.mit.edu	37	2	183730841	183730841	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL5	56884	broad.mit.edu	37	4	162307510	162307510	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUK	197258	broad.mit.edu	37	16	70509544	70509544	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXYD6	53826	broad.mit.edu	37	11	117711080	117711080	+	Silent	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161277764	161277764	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA6	2559	broad.mit.edu	37	5	161117334	161117334	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26589643	26589643	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALM	130589	broad.mit.edu	37	2	38903143	38903143	+	Missense_Mutation	SNP	G	A	A	rs114353506	by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL1	57452	broad.mit.edu	37	14	69799690	69799690	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL4	374378	broad.mit.edu	37	11	11398931	11398931	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBAS	2631	broad.mit.edu	37	7	56064924	56064924	+	Intron	SNP	A	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCKR	2646	broad.mit.edu	37	2	27728447	27728447	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCKR	2646	broad.mit.edu	37	2	27728463	27728464	+	Intron	INS	-	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCM2	9247	broad.mit.edu	37	6	10874376	10874376	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF6	392255	broad.mit.edu	37	8	97156922	97156922	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEN1	348654	broad.mit.edu	37	2	17955603	17955603	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GET4	51608	broad.mit.edu	37	7	930559	930559	+	Intron	SNP	T	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFI1B	8328	broad.mit.edu	37	9	135866464	135866464	+	3'UTR	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFM2	84340	broad.mit.edu	37	5	74054835	74054835	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGT7	2686	broad.mit.edu	37	20	33448152	33448152	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GINS1	9837	broad.mit.edu	37	20	25405910	25405910	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPR	2696	broad.mit.edu	37	19	46174714	46174714	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GK5	256356	broad.mit.edu	37	3	141904809	141904809	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYR1	84656	broad.mit.edu	37	16	4861915	4861915	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMEB2	26205	broad.mit.edu	37	20	62224331	62224331	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAS	2778	broad.mit.edu	37	20	57430234	57430234	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNG4	2786	broad.mit.edu	37	1	235747244	235747244	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNG5	2787	broad.mit.edu	37	1	84967770	84967770	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNL2	29889	broad.mit.edu	37	1	38032607	38032607	+	Missense_Mutation	SNP	C	A	A	rs116251390	byFrequency;by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA3	2802	broad.mit.edu	37	12	133375152	133375152	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA3	2802	broad.mit.edu	37	12	133381628	133381628	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA8C	729786	broad.mit.edu	37	15	20773897	20773897	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA8C	729786	broad.mit.edu	37	15	20778135	20778135	+	3'UTR	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA8E	390535	broad.mit.edu	37	15	23443588	23443588	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155746289	155746289	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOSR2	9570	broad.mit.edu	37	17	45097210	45097210	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6A	2823	broad.mit.edu	37	4	176561919	176561919	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPN3	51184	broad.mit.edu	37	12	110903094	110903094	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR109A	338442	broad.mit.edu	37	12	123186603	123186603	+	3'UTR	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR148	344561	broad.mit.edu	37	2	131486606	131486606	+	5'Flank	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25684794	25684794	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC6A	222545	broad.mit.edu	37	6	117127557	117127557	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11774135	11774135	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA2	2891	broad.mit.edu	37	4	158254165	158254165	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA2	2891	broad.mit.edu	37	4	158281336	158281336	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94137928	94137928	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102247725	102247725	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK3	2899	broad.mit.edu	37	1	37282790	37282790	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120690670	120690670	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9923360	9923360	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP1	23426	broad.mit.edu	37	12	66990859	66990859	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP2	80852	broad.mit.edu	37	3	14538198	14538198	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIPAP1	56850	broad.mit.edu	37	X	48837568	48837568	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146492787	146492787	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM6	2916	broad.mit.edu	37	5	178418461	178418461	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP10	85865	broad.mit.edu	37	7	89983718	89983718	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP10	85865	broad.mit.edu	37	7	89983720	89983720	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106698651	106698651	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A3	2982	broad.mit.edu	37	4	156631634	156631634	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1B3	2983	broad.mit.edu	37	4	156698768	156698768	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1B3	2983	broad.mit.edu	37	4	156715006	156715006	+	Splice_Site	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45396549	45396549	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCRTR2	3062	broad.mit.edu	37	6	55128554	55128554	+	Silent	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD1	25831	broad.mit.edu	37	14	31642990	31642990	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43532664	43532664	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2P4	440362	broad.mit.edu	37	16	32164257	32164257	+	5'Flank	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H1D	3007	broad.mit.edu	37	6	26234700	26234700	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AJ	8331	broad.mit.edu	37	6	27782674	27782674	+	5'Flank	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2BL	8340	broad.mit.edu	37	6	27775345	27775345	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H4I	8294	broad.mit.edu	37	6	27107385	27107385	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HM13	81502	broad.mit.edu	37	20	30147248	30147248	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186083241	186083242	+	Missense_Mutation	DNP	TG	AA	AA			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4A	3172	broad.mit.edu	37	20	43034554	43034554	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPA1L2	144983	broad.mit.edu	37	13	53191884	53191884	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB13	10481	broad.mit.edu	37	17	46805354	46805354	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB8	3218	broad.mit.edu	37	17	46691934	46691934	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRH4	59340	broad.mit.edu	37	18	22056939	22056939	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST5	222537	broad.mit.edu	37	6	114405568	114405568	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B7P2	158160	broad.mit.edu	37	10	38651094	38651094	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSP90AB2P	391634	broad.mit.edu	37	4	13339273	13339273	+	RNA	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSP90AB2P	391634	broad.mit.edu	37	4	13339291	13339291	+	RNA	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3E	285242	broad.mit.edu	37	3	183823316	183823316	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR5A	3361	broad.mit.edu	37	7	154876017	154876017	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	71008233	71008233	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IARS	3376	broad.mit.edu	37	9	94984884	94984884	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICK	22858	broad.mit.edu	37	6	52883302	52883302	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFFO1	25900	broad.mit.edu	37	12	6660140	6660140	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFFO1	25900	broad.mit.edu	37	12	6664921	6664921	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP1	10642	broad.mit.edu	37	17	47120887	47120887	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFN1	91156	broad.mit.edu	37	1	201195114	201195114	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF21	84966	broad.mit.edu	37	1	18702949	18702949	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF3	3321	broad.mit.edu	37	1	117150665	117150665	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBKB	3551	broad.mit.edu	37	8	42163754	42163754	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F8	27177	broad.mit.edu	37	2	113786676	113786676	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAP	3556	broad.mit.edu	37	3	190345227	190345227	+	Silent	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL9R	3581	broad.mit.edu	37	X	155235036	155235036	+	Missense_Mutation	SNP	C	T	T	rs140130676	byFrequency	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILF3	3609	broad.mit.edu	37	19	10790525	10790525	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILVBL	10994	broad.mit.edu	37	19	15229989	15229989	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ING4	51147	broad.mit.edu	37	12	6760378	6760378	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INO80D	54891	broad.mit.edu	37	2	206921452	206921452	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143007287	143007287	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS4	92105	broad.mit.edu	37	11	77639378	77639378	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCA1	79781	broad.mit.edu	37	2	237396758	237396758	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRS1	3667	broad.mit.edu	37	2	227660836	227660836	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITCH	83737	broad.mit.edu	37	20	33028121	33028121	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15713616	15713616	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15760627	15760627	+	Intron	SNP	A	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31405493	31405493	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31424098	31424098	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAE	3682	broad.mit.edu	37	17	3634499	3634499	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITLN1	55600	broad.mit.edu	37	1	160851184	160851184	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITM2A	9452	broad.mit.edu	37	X	78616643	78616643	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IWS1	55677	broad.mit.edu	37	2	128261073	128261073	+	Frame_Shift_Del	DEL	C	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD1C	221037	broad.mit.edu	37	10	64973792	64973792	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JPH2	57158	broad.mit.edu	37	20	42747043	42747043	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JUP	3728	broad.mit.edu	37	17	39680365	39680365	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB1	3745	broad.mit.edu	37	20	47990041	47990041	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK18	338567	broad.mit.edu	37	10	118969235	118969235	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196342230	196342230	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36793536	36793536	+	3'UTR	SNP	A	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD10	83892	broad.mit.edu	37	12	109907302	109907302	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD8	386617	broad.mit.edu	37	4	44177089	44177089	+	Silent	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55979578	55979578	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0182	23199	broad.mit.edu	37	16	85706146	85706146	+	3'UTR	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0368	23392	broad.mit.edu	37	9	114178639	114178639	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0556	23247	broad.mit.edu	37	16	27781094	27781094	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0564	23078	broad.mit.edu	37	13	42440254	42440254	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0802	23255	broad.mit.edu	37	18	8825859	8825859	+	Missense_Mutation	SNP	G	T	T	rs146614505	byFrequency	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1267	284058	broad.mit.edu	37	17	44108914	44108914	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1958	158405	broad.mit.edu	37	9	115421828	115421828	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5B	3799	broad.mit.edu	37	10	32337440	32337440	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39545914	39545914	+	Frame_Shift_Del	DEL	C	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL3	115653	broad.mit.edu	37	19	55247646	55247646	+	3'UTR	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DP1	768329	broad.mit.edu	37	19	55297704	55297704	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DX1	90011	broad.mit.edu	37	19	55044891	55044891	+	Intron	SNP	A	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIT	3815	broad.mit.edu	37	4	55598004	55598004	+	Intron	SNP	T	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNG1	3827	broad.mit.edu	37	3	186449307	186449308	+	Intron	DNP	AG	GA	GA			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNA5	3841	broad.mit.edu	37	6	117053462	117053462	+	Silent	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6A	3853	broad.mit.edu	37	12	52884515	52884515	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT84	3890	broad.mit.edu	37	12	52773822	52773822	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L2HGDH	79944	broad.mit.edu	37	14	50750751	50750752	+	Splice_Site	DNP	CC	AA	AA			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129419336	129419336	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129468348	129468348	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129749051	129749051	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60889319	60889319	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60892742	60892742	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107696157	107696157	+	Silent	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107718762	107718762	+	Splice_Site	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAPTM5	7805	broad.mit.edu	37	1	31211925	31211925	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP4	113251	broad.mit.edu	37	12	50834321	50834321	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS4	79603	broad.mit.edu	37	19	8320582	8320582	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS4	79603	broad.mit.edu	37	19	8321964	8321964	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS6	253782	broad.mit.edu	37	2	169622131	169622131	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCMT1	51451	broad.mit.edu	37	16	25182152	25182152	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136569909	136569909	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB2	9079	broad.mit.edu	37	4	16597298	16597298	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS14	56891	broad.mit.edu	37	19	40195140	40195140	+	5'UTR	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGI4	163175	broad.mit.edu	37	19	35617992	35617993	+	Intron	DNP	CT	TA	TA			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL1	340596	broad.mit.edu	37	X	111904016	111904016	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL4	375323	broad.mit.edu	37	3	9594086	9594086	+	Missense_Mutation	SNP	T	C	C	rs76516178		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX4	89884	broad.mit.edu	37	1	180243319	180243319	+	Splice_Site	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55107517	55107517	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55107527	55107527	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55143453	55143453	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55143930	55143930	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB4	11006	broad.mit.edu	37	19	55175787	55175787	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	27948880	27948881	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPK	643414	broad.mit.edu	37	10	90487827	90487827	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBRD1	55788	broad.mit.edu	37	6	70411412	70411412	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBRD2	92255	broad.mit.edu	37	5	36142567	36142567	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMX1A	4009	broad.mit.edu	37	1	165175280	165175280	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100128977	100128977	broad.mit.edu	37	17	43924377	43924377	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC146481	146481	broad.mit.edu	37	16	34713758	34713758	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC153328	153328	broad.mit.edu	37	5	135186257	135186257	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC255025	255025	broad.mit.edu	37	3	94656905	94656905	+	5'Flank	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC387647	387647	broad.mit.edu	37	10	29704388	29704388	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645166	645166	broad.mit.edu	37	1	148933067	148933067	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91843461	91843461	+	RNA	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728323	728323	broad.mit.edu	37	2	243037201	243037201	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22434330	22434330	+	Intron	SNP	T	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23077587	23077587	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAL2	80350	broad.mit.edu	37	6	160913901	160913901	+	RNA	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160952667	160952667	+	3'UTR	SNP	C	A	A	rs73012273	by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160969701	160969701	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82188470	82188470	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99772505	99772505	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40400206	40400206	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141135743	141135743	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141641433	141641433	+	Silent	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141819767	141819767	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC32	2615	broad.mit.edu	37	11	76376783	76376783	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37B	114659	broad.mit.edu	37	17	30377039	30377039	+	Silent	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40629571	40629571	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRSAM1	90678	broad.mit.edu	37	9	130221422	130221422	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	75078484	75078484	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUC7L2	51631	broad.mit.edu	37	7	139107013	139107013	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUM	4060	broad.mit.edu	37	12	91502412	91502412	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYL1	4066	broad.mit.edu	37	19	13211933	13211933	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235973133	235973133	+	Silent	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYZL1	84569	broad.mit.edu	37	10	29578149	29578149	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77797475	77797475	+	Intron	SNP	C	G	G	rs145472417		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAG	4099	broad.mit.edu	37	19	35786962	35786962	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAG	4099	broad.mit.edu	37	19	35790520	35790520	+	Missense_Mutation	SNP	T	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAML2	84441	broad.mit.edu	37	11	95826046	95826046	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21206557	21206557	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K4	4216	broad.mit.edu	37	6	161494668	161494671	+	Intron	DEL	TTTC	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K7	6885	broad.mit.edu	37	6	91257068	91257068	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K1	11184	broad.mit.edu	37	19	39098508	39098508	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK9	5601	broad.mit.edu	37	5	179676194	179676194	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165109675	165109675	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165109812	165109812	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK1	4139	broad.mit.edu	37	1	220799160	220799160	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC3R	4159	broad.mit.edu	37	20	54824013	54824013	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP1	79772	broad.mit.edu	37	5	94253649	94253649	+	Silent	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47504483	47504483	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEI1	150365	broad.mit.edu	37	22	42191478	42191478	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS1	4211	broad.mit.edu	37	2	66691209	66691209	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFRP	83552	broad.mit.edu	37	11	119216676	119216676	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGA	23269	broad.mit.edu	37	15	42032402	42032402	+	Splice_Site	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIA3	375056	broad.mit.edu	37	1	222805592	222805592	+	Silent	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIB1	57534	broad.mit.edu	37	18	19424150	19424150	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICALL1	85377	broad.mit.edu	37	22	38308323	38308323	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR30C1	407031	broad.mit.edu	37	1	41222991	41222991	+	RNA	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR411	693121	broad.mit.edu	37	14	101489536	101489536	+	5'Flank	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR516A2	574499	broad.mit.edu	37	19	54264393	54264393	+	RNA	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR520F	574464	broad.mit.edu	37	19	54183345	54183345	+	5'Flank	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKLN1	4289	broad.mit.edu	37	7	131071982	131071982	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKX	283078	broad.mit.edu	37	10	27964149	27964149	+	3'UTR	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLF1	4291	broad.mit.edu	37	3	158317887	158317887	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151944975	151944975	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLXIP	22877	broad.mit.edu	37	12	122617798	122617798	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89180257	89180257	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP27	64066	broad.mit.edu	37	11	102575212	102575212	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMRN1	22915	broad.mit.edu	37	4	90856970	90856970	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOAP1	64112	broad.mit.edu	37	14	93649561	93649561	+	Nonsense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOSC2	54996	broad.mit.edu	37	1	220955126	220955126	+	Frame_Shift_Del	DEL	C	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPHOSPH8	54737	broad.mit.edu	37	13	20235960	20235960	+	Silent	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPO	4353	broad.mit.edu	37	17	56355316	56355316	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPED2	744	broad.mit.edu	37	11	30432893	30432893	+	3'UTR	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPED2	744	broad.mit.edu	37	11	30439067	30439067	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRAP2	112609	broad.mit.edu	37	6	84765081	84765081	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRAP2	112609	broad.mit.edu	37	6	84772767	84772767	+	Intron	SNP	A	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH2	4436	broad.mit.edu	37	2	47690198	47690198	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1E	4493	broad.mit.edu	37	16	56660696	56660696	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD1	4522	broad.mit.edu	37	14	64894233	64894233	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFR	4524	broad.mit.edu	37	1	11851180	11851180	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTL5	9633	broad.mit.edu	37	11	68514725	68514725	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR15	22909	broad.mit.edu	37	15	31222813	31222813	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11205170	11205170	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTSS1	9788	broad.mit.edu	37	8	125579453	125579453	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9012905	9012906	+	Intron	INS	-	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9086026	9086026	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1081270	1081270	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBBP1A	10514	broad.mit.edu	37	17	4446447	4446447	+	Missense_Mutation	SNP	G	A	A	rs148844016	byFrequency	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYB	4602	broad.mit.edu	37	6	135514873	135514873	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10355230	10355230	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK2	85366	broad.mit.edu	37	20	30411461	30411461	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1B	4430	broad.mit.edu	37	2	192279444	192279444	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1	4661	broad.mit.edu	37	20	62842717	62842717	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N6AMT1	29104	broad.mit.edu	37	21	30252380	30252380	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAP1L1	4673	broad.mit.edu	37	12	76454042	76454042	+	Missense_Mutation	SNP	T	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78225462	78225462	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78400408	78400408	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78570162	78570162	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16918197	16918197	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD3	23310	broad.mit.edu	37	11	134062554	134062554	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDRG3	57446	broad.mit.edu	37	20	35284696	35284696	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115769577	115769577	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21185789	21185789	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152496741	152496741	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152506571	152506571	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD1	121441	broad.mit.edu	37	12	97314011	97314011	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK11	79858	broad.mit.edu	37	3	130884364	130884364	+	Splice_Site	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45097679	45097679	+	Intron	SNP	T	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45169764	45169764	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	22140339	22140339	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	22148258	22148258	+	5'Flank	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC1	4772	broad.mit.edu	37	18	77171101	77171101	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFXL1	152518	broad.mit.edu	37	4	47850138	47850138	+	3'UTR	SNP	T	A	A	rs138338542	by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGDN	25983	broad.mit.edu	37	14	23939129	23939129	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52508632	52508632	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63768065	63768065	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63768840	63768841	+	Intron	DNP	CC	AA	AA			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKX2-2	4821	broad.mit.edu	37	20	21494266	21494266	+	Silent	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKX6-1	4825	broad.mit.edu	37	4	85416934	85416934	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC3	197358	broad.mit.edu	37	16	3600384	3600384	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC3	197358	broad.mit.edu	37	16	3613765	3613765	+	Silent	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC5	84166	broad.mit.edu	37	16	57077623	57077623	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC5	84166	broad.mit.edu	37	16	57111434	57111434	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP10	338322	broad.mit.edu	37	11	7982367	7982367	+	Missense_Mutation	SNP	C	A	A	rs112117055	byFrequency;by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP12	91662	broad.mit.edu	37	19	54304614	54304614	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56419433	56419433	+	Intron	SNP	C	A	A	rs146826430	by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7060810	7060810	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56467428	56467428	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NNT	23530	broad.mit.edu	37	5	43653137	43653137	+	Silent	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOC2L	26155	broad.mit.edu	37	1	887454	887454	+	Silent	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOC4L	79050	broad.mit.edu	37	12	132628999	132628999	+	5'UTR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL11	25926	broad.mit.edu	37	17	65732256	65732256	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1	4842	broad.mit.edu	37	12	117703232	117703232	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR1	4881	broad.mit.edu	37	1	153653755	153653755	+	Missense_Mutation	SNP	A	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR1	4881	broad.mit.edu	37	1	153659054	153659054	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34873896	34873896	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPY5R	4889	broad.mit.edu	37	4	164272217	164272217	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR4A1	3164	broad.mit.edu	37	12	52432653	52432653	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115393013	115393013	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107832198	107832198	+	Silent	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRD1	4898	broad.mit.edu	37	1	52257206	52257206	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84718748	84718748	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84745402	84745402	+	3'UTR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRGN	4900	broad.mit.edu	37	11	124615350	124615350	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP2	8828	broad.mit.edu	37	2	206592785	206592785	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50280503	50280503	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50724468	50724468	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50733693	50733693	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSDHL	50814	broad.mit.edu	37	X	152034206	152034206	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5C3L	115024	broad.mit.edu	37	17	39987052	39987052	+	Splice_Site	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG1	22854	broad.mit.edu	37	1	107867132	107867132	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUF2	83540	broad.mit.edu	37	1	163297419	163297419	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUF2	83540	broad.mit.edu	37	1	163298127	163298127	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF5	55998	broad.mit.edu	37	X	101092839	101092839	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH1	30010	broad.mit.edu	37	7	8791179	8791179	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH2	11249	broad.mit.edu	37	2	139429232	139429232	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228524067	228524067	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSL1	23363	broad.mit.edu	37	2	220423055	220423055	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF1	4956	broad.mit.edu	37	8	103563926	103563926	+	5'UTR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123780638	123780638	+	Silent	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183601575	183601575	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183675777	183675777	+	Silent	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78431262	78431262	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50943526	50943526	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A2	341276	broad.mit.edu	37	11	6891376	6891376	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G7	390265	broad.mit.edu	37	11	123909148	123909148	+	Silent	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K1	391109	broad.mit.edu	37	1	158435310	158435310	+	5'Flank	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11L1	391189	broad.mit.edu	37	1	248005246	248005246	+	5'Flank	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1D4	8385	broad.mit.edu	37	17	2966186	2966186	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248185416	248185416	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T8	343172	broad.mit.edu	37	1	248085161	248085161	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W5	441932	broad.mit.edu	37	1	247654579	247654579	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C12	283093	broad.mit.edu	37	11	50003169	50003169	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C15	81309	broad.mit.edu	37	11	55322295	55322295	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C46	119749	broad.mit.edu	37	11	51515839	51515839	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51G1	79324	broad.mit.edu	37	11	4945495	4945495	+	Silent	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B21	219968	broad.mit.edu	37	11	58275328	58275328	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D14	219436	broad.mit.edu	37	11	55563362	55563362	+	Missense_Mutation	SNP	G	T	T	rs145501127	byFrequency;by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K6	128371	broad.mit.edu	37	1	158724584	158724584	+	5'Flank	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7E5P	219445	broad.mit.edu	37	11	55747097	55747097	+	Silent	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8D1	283159	broad.mit.edu	37	11	124180032	124180032	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8D1	283159	broad.mit.edu	37	11	124180094	124180094	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9G9	504191	broad.mit.edu	37	11	56468369	56468369	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC5L	5001	broad.mit.edu	37	7	103848449	103848449	+	5'UTR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSR2	116039	broad.mit.edu	37	8	99961558	99961558	+	Silent	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSTF1	26578	broad.mit.edu	37	9	77749369	77749369	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29650533	29650533	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY12	64805	broad.mit.edu	37	3	151056021	151056021	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY1	5028	broad.mit.edu	37	3	152553525	152553525	+	5'UTR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI2	11240	broad.mit.edu	37	1	17419874	17419874	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPD7	11044	broad.mit.edu	37	5	6750603	6750604	+	Frame_Shift_Ins	INS	-	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPL	390928	broad.mit.edu	37	19	39591523	39591523	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PATE1	160065	broad.mit.edu	37	11	125616669	125616669	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91714645	91714646	+	Intron	DNP	TC	AA	AA			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91715982	91715982	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH18	54510	broad.mit.edu	37	4	138452894	138452894	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA10	56139	broad.mit.edu	37	5	140237760	140237760	+	Silent	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA11	56138	broad.mit.edu	37	5	140250004	140250004	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140553859	140553859	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA1	56114	broad.mit.edu	37	5	140711869	140711869	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA3	56112	broad.mit.edu	37	5	140725651	140725651	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA4	56111	broad.mit.edu	37	5	140736053	140736053	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82584907	82584907	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL2	80003	broad.mit.edu	37	1	233313730	233313730	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCP4	5121	broad.mit.edu	37	21	41300875	41300875	+	Intron	SNP	T	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178592720	178592720	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178862726	178862726	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20704681	20704681	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	145015660	145015660	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6A	5145	broad.mit.edu	37	5	149245776	149245776	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55161585	55161585	+	3'UTR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDHA2	5161	broad.mit.edu	37	4	96761804	96761804	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDIA5	10954	broad.mit.edu	37	3	122821599	122821599	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5A	23244	broad.mit.edu	37	4	39881491	39881491	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDXDC1	23042	broad.mit.edu	37	16	15230634	15230634	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	32057850	32057850	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57326484	57326484	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM2L1	283209	broad.mit.edu	37	11	74085689	74085689	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF15	23338	broad.mit.edu	37	5	133909619	133909619	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF3	23469	broad.mit.edu	37	6	64421017	64421017	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKB	5257	broad.mit.edu	37	16	47581459	47581459	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLPP2	23035	broad.mit.edu	37	16	71715787	71715787	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGL	9487	broad.mit.edu	37	17	16216938	16216938	+	Intron	SNP	T	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGR	5284	broad.mit.edu	37	1	207110897	207110897	+	Silent	SNP	C	T	T	rs141346783		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CB	5291	broad.mit.edu	37	3	138478125	138478125	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106512940	106512940	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PINX1	54984	broad.mit.edu	37	8	10623344	10623344	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1P1	206426	broad.mit.edu	37	6	7987658	7987658	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PJA1	64219	broad.mit.edu	37	X	68381937	68381937	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51897943	51897943	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP1	5317	broad.mit.edu	37	1	201253095	201253095	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP2	5318	broad.mit.edu	37	12	32945692	32945692	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4F	255189	broad.mit.edu	37	15	42437893	42437893	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAT	5327	broad.mit.edu	37	8	42037728	42037728	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB3	5331	broad.mit.edu	37	11	64028866	64028866	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA6	22874	broad.mit.edu	37	1	204228807	204228807	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131951131	131951131	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG4B	153478	broad.mit.edu	37	5	143479	143479	+	Intron	SNP	G	T	T	rs139992460	by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG5	57449	broad.mit.edu	37	1	6527485	6527485	+	3'UTR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG6	55200	broad.mit.edu	37	12	6424235	6424235	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHM1	9842	broad.mit.edu	37	17	43552535	43552535	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLS3	5358	broad.mit.edu	37	X	114874743	114874743	+	Silent	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLUNC	51297	broad.mit.edu	37	20	31825969	31825969	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131815270	131815270	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131829850	131829850	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	132070105	132070105	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118220661	118220661	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PODXL	5420	broad.mit.edu	37	7	131195709	131195709	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84622681	84622681	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84634096	84634096	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLD1	5424	broad.mit.edu	37	19	50905995	50905995	+	Nonsense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133248726	133248726	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121208732	121208732	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121248716	121248716	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2B	5431	broad.mit.edu	37	4	57857037	57857037	+	Silent	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEA	340441	broad.mit.edu	37	8	43159972	43159972	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEC	388468	broad.mit.edu	37	18	14542915	14542915	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEE	445582	broad.mit.edu	37	2	132021684	132021684	+	Frame_Shift_Del	DEL	C	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEH	23784	broad.mit.edu	37	22	16270055	16270055	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76797493	76797493	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1CB	5500	broad.mit.edu	37	2	29001908	29001908	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R13L	10848	broad.mit.edu	37	19	45895654	45895654	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146086015	146086015	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM12	59335	broad.mit.edu	37	9	133553777	133553777	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23527682	23527682	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69015265	69015265	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69033339	69033339	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT6	55170	broad.mit.edu	37	1	107600116	107600116	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROKR2	128674	broad.mit.edu	37	20	5283203	5283203	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF31	26121	broad.mit.edu	37	19	54629929	54629929	+	Silent	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR14	78994	broad.mit.edu	37	16	30666091	30666091	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRG2	5639	broad.mit.edu	37	19	50087278	50087278	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142459634	142459634	+	Silent	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43383729	43383729	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43514022	43514022	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43514659	43514659	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43593538	43593538	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43762926	43762926	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMA1	5682	broad.mit.edu	37	11	14542013	14542013	+	5'Flank	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD1	5707	broad.mit.edu	37	2	231974288	231974288	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD4	5710	broad.mit.edu	37	1	151237896	151237896	+	Silent	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGER3	5733	broad.mit.edu	37	1	71327997	71327997	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGER3	5733	broad.mit.edu	37	1	71440156	71440156	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTN	5764	broad.mit.edu	37	7	136936161	136936161	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRA	5786	broad.mit.edu	37	20	3003389	3003389	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRG	5793	broad.mit.edu	37	3	61906826	61906827	+	Intron	INS	-	TTCT	TTCT			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128562491	128562491	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	158007149	158007149	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29638171	29638171	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52359491	52359491	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52384652	52384652	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QPRT	23475	broad.mit.edu	37	16	29708382	29708382	+	Silent	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP3	9727	broad.mit.edu	37	16	546698	546698	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB25	57111	broad.mit.edu	37	1	156038319	156038319	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD21	5885	broad.mit.edu	37	8	117874215	117874216	+	Intron	DNP	CC	AA	AA			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAE1	8480	broad.mit.edu	37	20	55948682	55948682	+	Intron	SNP	T	C	C	rs34667817		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA2	57186	broad.mit.edu	37	20	20484116	20484116	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP3L	202151	broad.mit.edu	37	5	36253962	36253962	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP3L	202151	broad.mit.edu	37	5	36271399	36271399	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1A	5906	broad.mit.edu	37	1	112190881	112190881	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1GDS1	5910	broad.mit.edu	37	4	99339942	99339942	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA3	22821	broad.mit.edu	37	13	114776579	114776579	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA3	22821	broad.mit.edu	37	13	114806652	114806652	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGEF1C	255426	broad.mit.edu	37	5	179554591	179554591	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80408616	80408616	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM39	9584	broad.mit.edu	37	20	34295112	34295112	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM7	10179	broad.mit.edu	37	11	114271263	114271263	+	5'Flank	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBMX2	51634	broad.mit.edu	37	X	129545489	129545489	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79313531	79313531	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103292095	103292095	+	Intron	SNP	A	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RET	5979	broad.mit.edu	37	10	43609932	43609932	+	Silent	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGNEF	64283	broad.mit.edu	37	5	73200239	73200239	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD4	285190	broad.mit.edu	37	2	108488462	108488462	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS4	5999	broad.mit.edu	37	1	163044500	163044500	+	3'UTR	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS5	8490	broad.mit.edu	37	1	163117163	163117163	+	Missense_Mutation	SNP	C	T	T	rs147130564	byFrequency	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72936675	72936675	+	Intron	SNP	G	A	A	rs148401304	by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOD	29984	broad.mit.edu	37	11	66837753	66837753	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOV	171177	broad.mit.edu	37	15	41165980	41165980	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152295112	152295112	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152320326	152320326	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEH2B	79621	broad.mit.edu	37	13	51503800	51503800	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF112	7732	broad.mit.edu	37	17	19317381	19317381	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF17	56163	broad.mit.edu	37	13	25353696	25353696	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF220	55182	broad.mit.edu	37	1	45088460	45088460	+	Splice_Site	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF38	152006	broad.mit.edu	37	9	36356463	36356463	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF8	9025	broad.mit.edu	37	6	37336320	37336320	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10470189	10470190	+	Missense_Mutation	DNP	GG	CT	CT			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE65	6121	broad.mit.edu	37	1	68914233	68914233	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPF1	80135	broad.mit.edu	37	1	84946553	84946553	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL10L	140801	broad.mit.edu	37	14	47120296	47120296	+	Nonstop_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL15	6138	broad.mit.edu	37	3	23960910	23960910	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPTOR	57521	broad.mit.edu	37	17	78897445	78897445	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO3	84870	broad.mit.edu	37	6	127517001	127517001	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN1	6252	broad.mit.edu	37	14	60069870	60069870	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	93004034	93004034	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP1	59350	broad.mit.edu	37	4	159538291	159538291	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP2	122042	broad.mit.edu	37	13	32351502	32351502	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP4	339403	broad.mit.edu	37	1	155911749	155911749	+	Silent	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38939008	38939008	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39068645	39068646	+	Frame_Shift_Ins	INS	-	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237754044	237754044	+	Silent	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237778129	237778129	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237837479	237837479	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237947112	237947112	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33842358	33842358	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33936616	33936616	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33936743	33936743	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34016338	34016338	+	Silent	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SACS	26278	broad.mit.edu	37	13	23929924	23929924	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134988009	134988009	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAG	6295	broad.mit.edu	37	2	234249028	234249028	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMHD1	25939	broad.mit.edu	37	20	35545324	35545324	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMSN1	64092	broad.mit.edu	37	21	15884755	15884755	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCARA5	286133	broad.mit.edu	37	8	27737310	27737310	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCEL	8796	broad.mit.edu	37	13	78177196	78177196	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCMH1	22955	broad.mit.edu	37	1	41494216	41494216	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDHB	6390	broad.mit.edu	37	1	17371153	17371153	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC16B	89866	broad.mit.edu	37	1	177937180	177937180	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC63	11231	broad.mit.edu	37	6	108214748	108214748	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9379902	9379902	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6A	57556	broad.mit.edu	37	5	115831129	115831129	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB13	5275	broad.mit.edu	37	18	61260283	61260283	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB13	5275	broad.mit.edu	37	18	61264493	61264493	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB13	5275	broad.mit.edu	37	18	61264781	61264781	+	3'UTR	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61305395	61305396	+	Intron	DNP	GT	AA	AA			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61328038	61328038	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB8	5271	broad.mit.edu	37	18	61652456	61652456	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD8	387893	broad.mit.edu	37	12	123875039	123875039	+	Intron	DEL	G	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B3	23450	broad.mit.edu	37	16	70566338	70566338	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFXN5	94097	broad.mit.edu	37	2	73188228	73188228	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	155885362	155885362	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	14095345	14095345	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	14166660	14166661	+	Intron	DNP	CT	AA	AA			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3D19	152503	broad.mit.edu	37	4	152043243	152043243	+	Nonstop_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC2	79628	broad.mit.edu	37	5	148431894	148431894	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51219505	51219505	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHCBP1	79801	broad.mit.edu	37	16	46655362	46655362	+	5'Flank	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHKBP1	92799	broad.mit.edu	37	19	41086466	41086466	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHKBP1	92799	broad.mit.edu	37	19	41096802	41096802	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC16	400709	broad.mit.edu	37	19	50475422	50475422	+	Intron	DEL	C	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L3	23094	broad.mit.edu	37	19	38621511	38621511	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164724627	164724627	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164755795	164755795	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164783080	164783080	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF6	114836	broad.mit.edu	37	1	160460355	160460355	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF6	114836	broad.mit.edu	37	1	160461212	160461212	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A7	10723	broad.mit.edu	37	5	1081938	1081938	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A7	10723	broad.mit.edu	37	5	1093802	1093802	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43247686	43247686	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A3	51296	broad.mit.edu	37	11	60711284	60711284	+	Silent	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A2	6571	broad.mit.edu	37	10	119014744	119014744	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A15	55356	broad.mit.edu	37	1	116569384	116569384	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A2	25769	broad.mit.edu	37	9	19785835	19785836	+	Intron	DNP	CC	AT	AT			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A6	293	broad.mit.edu	37	X	1508155	1508155	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC29A3	55315	broad.mit.edu	37	10	73111580	73111580	+	Intron	SNP	A	G	G	rs147292817	by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A9	56606	broad.mit.edu	37	4	10022985	10022985	+	Silent	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A6	145389	broad.mit.edu	37	14	61519096	61519096	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18266952	18266952	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A12	6539	broad.mit.edu	37	12	306078	306078	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A18	348932	broad.mit.edu	37	5	1246128	1246128	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20636080	20636080	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20658583	20658583	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A9	6536	broad.mit.edu	37	1	44477388	44477388	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A4	6545	broad.mit.edu	37	22	21383872	21383872	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A10	285335	broad.mit.edu	37	3	111887583	111887583	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A4	389015	broad.mit.edu	37	2	103095688	103095688	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143237105	143237105	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98808755	98808755	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK3	22865	broad.mit.edu	37	3	164907248	164907248	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLMAP	7871	broad.mit.edu	37	3	57857303	57857303	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18908270	18908270	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC2	64094	broad.mit.edu	37	6	168999360	168999360	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPD2	6610	broad.mit.edu	37	6	109762905	109762905	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP25	6616	broad.mit.edu	37	20	10280118	10280118	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP91	9892	broad.mit.edu	37	6	84270503	84270503	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD114-12	767590	broad.mit.edu	37	14	101435253	101435253	+	5'Flank	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD114-23	767603	broad.mit.edu	37	14	101450115	101450115	+	5'Flank	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD114-4	767580	broad.mit.edu	37	14	101419754	101419754	+	5'Flank	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25302149	25302149	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25200236	25200236	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTB1	6641	broad.mit.edu	37	8	121554375	121554375	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51351206	51351206	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51705153	51705153	+	Intron	SNP	G	T	T	rs144613675	by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX10	29887	broad.mit.edu	37	7	26404579	26404579	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOAT1	6646	broad.mit.edu	37	1	179312689	179312689	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOLH	6650	broad.mit.edu	37	16	596761	596761	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS2	57537	broad.mit.edu	37	4	7728561	7728561	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106937735	106937735	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP110	3431	broad.mit.edu	37	2	231036340	231036340	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231135279	231135279	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP2	6668	broad.mit.edu	37	17	45993411	45993411	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52938360	52938360	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52948509	52948509	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA4	132851	broad.mit.edu	37	4	177116477	177116477	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA6	54558	broad.mit.edu	37	1	48764476	48764476	+	Missense_Mutation	SNP	C	A	A	rs144278281		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE7P	441251	broad.mit.edu	37	7	72333323	72333323	+	RNA	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35628521	35628521	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEN	23013	broad.mit.edu	37	1	16255835	16255835	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEN	23013	broad.mit.edu	37	1	16259617	16259617	+	Frame_Shift_Del	DEL	C	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPIC	121599	broad.mit.edu	37	12	101871227	101871227	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK2	9806	broad.mit.edu	37	10	73826772	73826772	+	Silent	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOPL	339745	broad.mit.edu	37	2	139316626	139316626	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55656573	55656573	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158606042	158606042	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158614875	158614875	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158641788	158641788	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158644088	158644088	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158654895	158654895	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRBD1	55133	broad.mit.edu	37	2	45800477	45800477	+	Nonsense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRC	6714	broad.mit.edu	37	20	36031099	36031099	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP1	57522	broad.mit.edu	37	12	64458826	64458826	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRMS	6725	broad.mit.edu	37	20	62174827	62174827	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM2	23524	broad.mit.edu	37	16	2812488	2812488	+	Silent	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSBP3	23648	broad.mit.edu	37	1	54870665	54870665	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSTR5	6755	broad.mit.edu	37	16	1129274	1129274	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX5	6758	broad.mit.edu	37	X	48051815	48051815	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX5	6758	broad.mit.edu	37	X	48054861	48054861	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST7L	54879	broad.mit.edu	37	1	113098589	113098589	+	Silent	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD7	56910	broad.mit.edu	37	2	96853011	96853011	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT2	6773	broad.mit.edu	37	12	56750038	56750038	+	Nonsense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK25	10494	broad.mit.edu	37	2	242434976	242434976	+	3'UTR	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK31	56164	broad.mit.edu	37	7	23826176	23826176	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK4	6789	broad.mit.edu	37	20	43703613	43703613	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48808908	48808908	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA8	346673	broad.mit.edu	37	7	134925270	134925270	+	Splice_Site	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX12	23673	broad.mit.edu	37	1	28138717	28138717	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX16	8675	broad.mit.edu	37	20	57244382	57244382	+	Silent	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX6	10228	broad.mit.edu	37	1	180934680	180934680	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT6B1	391365	broad.mit.edu	37	2	37406459	37406459	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN2	6854	broad.mit.edu	37	3	12188315	12188315	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152605312	152605312	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152702063	152702063	+	Intron	DEL	T	-	-	rs75060719		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT10	341359	broad.mit.edu	37	12	33560310	33560310	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT11	23208	broad.mit.edu	37	1	155838424	155838424	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT4	6860	broad.mit.edu	37	18	40853678	40853678	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT4	6860	broad.mit.edu	37	18	40853766	40853766	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT4	6860	broad.mit.edu	37	18	40854165	40854165	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT5	6861	broad.mit.edu	37	19	55686464	55686464	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACR3	6870	broad.mit.edu	37	4	104510895	104510895	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF6L	10629	broad.mit.edu	37	11	62554784	62554784	+	3'UTR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC2	26115	broad.mit.edu	37	17	61391611	61391611	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R40	259286	broad.mit.edu	37	7	142919493	142919493	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D4	9882	broad.mit.edu	37	13	75915566	75915566	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D9	23158	broad.mit.edu	37	4	141555141	141555141	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBR1	10716	broad.mit.edu	37	2	162276665	162276665	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBRG4	9238	broad.mit.edu	37	7	45139897	45139897	+	3'UTR	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX15	6913	broad.mit.edu	37	1	119427303	119427303	+	3'UTR	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX18	9096	broad.mit.edu	37	6	85457845	85457845	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114832748	114832748	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114839576	114839576	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBXAS1	6916	broad.mit.edu	37	7	139653162	139653162	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBXAS1	6916	broad.mit.edu	37	7	139717652	139717652	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCN1	6947	broad.mit.edu	37	11	59620551	59620551	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRKH	11022	broad.mit.edu	37	1	151753941	151753941	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEKT1	83659	broad.mit.edu	37	17	6703940	6703940	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TERT	7015	broad.mit.edu	37	5	1294798	1294798	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TET3	200424	broad.mit.edu	37	2	74320686	74320686	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFCP2	7024	broad.mit.edu	37	12	51518686	51518686	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFR2	7036	broad.mit.edu	37	7	100229591	100229591	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBRAP1	9392	broad.mit.edu	37	2	105924698	105924698	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGIF2LX	90316	broad.mit.edu	37	X	89177700	89177700	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM6	343641	broad.mit.edu	37	20	2381107	2381107	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	134145975	134145975	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THAP5	168451	broad.mit.edu	37	7	108205159	108205159	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169635041	169635041	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THNSL2	55258	broad.mit.edu	37	2	88472749	88472749	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC6	79228	broad.mit.edu	37	16	3076161	3076161	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD1	55901	broad.mit.edu	37	13	52971467	52971467	+	Silent	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM2	26230	broad.mit.edu	37	6	155532427	155532427	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43783064	43783064	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMM13	26517	broad.mit.edu	37	19	2426159	2426159	+	3'UTR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE3	7090	broad.mit.edu	37	15	70368533	70368533	+	Intron	SNP	A	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	166976147	166976147	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN1	7094	broad.mit.edu	37	9	35704836	35704836	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63014513	63014513	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLX1	3195	broad.mit.edu	37	10	102896704	102896704	+	3'UTR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC5	79838	broad.mit.edu	37	16	19498264	19498264	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM116	89894	broad.mit.edu	37	12	112380944	112380944	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM117	84216	broad.mit.edu	37	12	44402814	44402814	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM123	114908	broad.mit.edu	37	11	102323343	102323343	+	Silent	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132C	92293	broad.mit.edu	37	12	128899865	128899865	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM144	55314	broad.mit.edu	37	4	159158782	159158782	+	Silent	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15433872	15433872	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM225	338661	broad.mit.edu	37	11	123754037	123754037	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM229B	161145	broad.mit.edu	37	14	67940629	67940629	+	Silent	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM56	148534	broad.mit.edu	37	1	95614448	95614448	+	Intron	SNP	G	T	T	rs141807553	by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM57	55219	broad.mit.edu	37	1	25775240	25775240	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM71	137835	broad.mit.edu	37	8	133769389	133769389	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM81	388730	broad.mit.edu	37	1	205053177	205053177	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM87B	84910	broad.mit.edu	37	2	112834999	112834999	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM87B	84910	broad.mit.edu	37	2	112849175	112849175	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11B	132724	broad.mit.edu	37	4	69098031	69098031	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11D	9407	broad.mit.edu	37	4	68691762	68691762	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19737572	19737572	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29725102	29725102	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFAIP6	7130	broad.mit.edu	37	2	152235769	152235769	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74737436	74737436	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6C	57690	broad.mit.edu	37	17	76045134	76045134	+	5'UTR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175323529	175323529	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175332817	175332817	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175396979	175396979	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH2	121278	broad.mit.edu	37	12	72332704	72332704	+	5'UTR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH2	121278	broad.mit.edu	37	12	72332773	72332773	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPRG1	285386	broad.mit.edu	37	3	188956642	188956642	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10971220	10971220	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDMT1	1787	broad.mit.edu	37	10	17199437	17199437	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDN	10345	broad.mit.edu	37	6	123673692	123673692	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRERF1	55809	broad.mit.edu	37	6	42233435	42233435	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72863767	72863767	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIB2	28951	broad.mit.edu	37	2	12880965	12880965	+	3'UTR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM22	10346	broad.mit.edu	37	11	5717680	5717680	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM35	23087	broad.mit.edu	37	8	27168490	27168490	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM42	287015	broad.mit.edu	37	3	140397351	140397351	+	Missense_Mutation	SNP	C	T	T	rs139146415		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55033003	55033003	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM49	57093	broad.mit.edu	37	11	89531490	89531490	+	Missense_Mutation	SNP	G	C	C	rs143812880		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5663628	5663628	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM69	140691	broad.mit.edu	37	15	45052208	45052208	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRMT6	51605	broad.mit.edu	37	20	5930877	5930877	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC3	7222	broad.mit.edu	37	4	122824231	122824231	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC7	57113	broad.mit.edu	37	5	135583167	135583167	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM4	54795	broad.mit.edu	37	19	49685943	49685943	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77415139	77415139	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116616109	116616109	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV3	162514	broad.mit.edu	37	17	3417247	3417247	+	Frame_Shift_Del	DEL	A	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV6	55503	broad.mit.edu	37	7	142571146	142571146	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRYX3	136541	broad.mit.edu	37	7	141957389	141957389	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA13	114960	broad.mit.edu	37	7	130370058	130370058	+	5'UTR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSKS	60385	broad.mit.edu	37	19	50249627	50249627	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSTA3	7264	broad.mit.edu	37	8	144695114	144695114	+	Nonsense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21A	199223	broad.mit.edu	37	3	39176802	39176802	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC22	55001	broad.mit.edu	37	1	55253433	55253433	+	Silent	SNP	C	A	A	rs146222875	byFrequency;by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC38	55020	broad.mit.edu	37	22	46679823	46679823	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC39C	125488	broad.mit.edu	37	18	21663115	21663115	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC7B	145567	broad.mit.edu	37	14	91084442	91084442	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179395553	179395553	+	Silent	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179485223	179485223	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179545824	179545824	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179565846	179565846	+	Splice_Site	SNP	C	A	A	rs112818474		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB4Q	56604	broad.mit.edu	37	4	190903801	190903801	+	Silent	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UACA	55075	broad.mit.edu	37	15	70959250	70959250	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA2	10054	broad.mit.edu	37	19	34934961	34934961	+	Intron	SNP	T	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3A	7337	broad.mit.edu	37	15	25650634	25650634	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	157041331	157041331	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE4B	10277	broad.mit.edu	37	1	10166582	10166582	+	Silent	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE4B	10277	broad.mit.edu	37	1	10206973	10206973	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBN2	254048	broad.mit.edu	37	7	138946416	138946416	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLNL	143630	broad.mit.edu	37	11	5537492	5537492	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBTD2	92181	broad.mit.edu	37	5	171639032	171639033	+	Missense_Mutation	DNP	GC	TG	TG	rs145414052		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCHL5	51377	broad.mit.edu	37	1	192998665	192998665	+	Silent	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCHL5	51377	broad.mit.edu	37	1	193028607	193028607	+	5'Flank	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B4	7363	broad.mit.edu	37	4	70346380	70346380	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF1BP1L	23074	broad.mit.edu	37	12	100452831	100452831	+	Nonsense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMOD	7369	broad.mit.edu	37	16	20355580	20355580	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMOD	7369	broad.mit.edu	37	16	20359896	20359896	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMOD	7369	broad.mit.edu	37	16	20360574	20360574	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33481607	33481607	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33495370	33495370	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC80	285175	broad.mit.edu	37	2	210674228	210674228	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH1C	10083	broad.mit.edu	37	11	17532128	17532128	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP34	9736	broad.mit.edu	37	2	61431317	61431317	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107445394	107445394	+	IGR	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107445553	107445553	+	IGR	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107446895	107446895	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42400455	42400455	+	IGR	DEL	T	-	-	rs71264011		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	44983726	44983726	+	IGR	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	45742160	45742160	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52465769	52465769	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	66929556	66929556	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	86787445	86787445	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	101464890	101464890	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	101465007	101465007	+	IGR	DEL	G	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	118704425	118704425	+	IGR	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124078801	124078801	+	IGR	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	17250602	17250602	+	IGR	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	27912298	27912298	+	IGR	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	5113863	5113863	+	IGR	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51393733	51393733	+	IGR	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51426490	51426490	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55071634	55071634	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55277507	55277507	+	IGR	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56144173	56144173	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58133815	58133815	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89497970	89497970	+	IGR	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90849028	90849028	+	IGR	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	129498179	129498179	+	IGR	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34318202	34318202	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43954898	43954898	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	44054258	44054258	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55516873	55516873	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	60206114	60206114	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61625530	61625530	+	IGR	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	63397852	63397852	+	IGR	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80423454	80423454	+	IGR	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80497206	80497206	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80647214	80647214	+	IGR	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19961823	19961823	+	IGR	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	37512751	37512751	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68486058	68486058	+	IGR	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	75403566	75403566	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	77560027	77560027	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101396309	101396309	+	IGR	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19118199	19118199	+	IGR	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20148330	20148330	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	32711820	32711820	+	IGR	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43127226	43127226	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45333294	45333294	+	IGR	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	65067313	65067313	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	66347204	66347204	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	77639469	77639469	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97235107	97235107	+	IGR	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102389268	102389268	+	IGR	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20445921	20445921	+	IGR	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20448187	20448187	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20456780	20456780	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21140224	21140224	+	IGR	SNP	T	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21140848	21140848	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22692046	22692046	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	50086433	50086433	+	IGR	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	78234570	78234570	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32183018	32183018	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32621249	32621249	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33410720	33410720	+	IGR	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33410832	33410832	+	IGR	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34331085	34331085	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34727303	34727303	+	IGR	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	59122932	59122932	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	73975495	73975495	+	IGR	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	76269112	76269112	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20488706	20488706	+	IGR	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	30330309	30330309	+	IGR	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60316474	60316474	+	IGR	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14201114	14201114	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26232079	26232079	+	IGR	SNP	C	A	A	rs111986203		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	58330465	58330465	+	IGR	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	21144069	21144069	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	21751883	21751883	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	21821888	21821888	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	34512681	34512681	+	IGR	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	51262408	51262408	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53507607	53507607	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53833884	53833884	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	54279107	54279107	+	IGR	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55032934	55032934	+	IGR	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	9130008	9130008	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106433490	106433490	+	IGR	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106433976	106433976	+	IGR	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106434379	106434379	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	113433484	113433484	+	IGR	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121245358	121245358	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	13354145	13354145	+	IGR	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146591699	146591699	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146592760	146592760	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149065330	149065330	+	IGR	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	150876431	150876431	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152050410	152050410	+	IGR	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	161191992	161191992	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	189959559	189959559	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	189960523	189960523	+	IGR	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192215811	192215811	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192216959	192216959	+	IGR	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	211347002	211347002	+	IGR	DEL	C	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	233971754	233971754	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247400532	247400532	+	IGR	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	40798956	40798956	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	50871087	50871087	+	IGR	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	77165678	77165678	+	IGR	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79520814	79520814	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	80749429	80749429	+	IGR	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	89797703	89797703	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	21469157	21469157	+	IGR	SNP	A	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29862226	29862226	+	IGR	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29873161	29873161	+	IGR	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10863341	10863341	+	IGR	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14757256	14757256	+	IGR	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14824055	14824055	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14899577	14899577	+	IGR	SNP	A	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24780863	24780863	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16346022	16346022	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	106961893	106961893	+	IGR	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	108938947	108938947	+	IGR	SNP	T	A	A	rs115503477	by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	126580803	126580803	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	129276732	129276732	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130254153	130254153	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133019217	133019217	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	13555036	13555036	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	166671002	166671002	+	IGR	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17566875	17566875	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194994916	194994916	+	IGR	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	222826688	222826688	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	226857669	226857669	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	242515444	242515444	+	IGR	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	26373008	26373008	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	47918247	47918247	+	IGR	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	73597180	73597180	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91777728	91777728	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91790868	91790868	+	IGR	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800513	91800513	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800672	91800672	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800969	91800969	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91937661	91937661	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	137600107	137600107	+	IGR	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	148705174	148705174	+	IGR	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	155705800	155705800	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163719824	163719824	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	23176225	23176226	+	IGR	DNP	TG	CT	CT			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	80265771	80265772	+	IGR	DNP	TG	AT	AT			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	90264916	90264916	+	IGR	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96285648	96285648	+	IGR	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	106024313	106024313	+	IGR	DEL	C	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116064263	116064263	+	IGR	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	118496225	118496225	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	139482687	139482687	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190395220	190395220	+	IGR	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	65297162	65297162	+	IGR	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69417590	69417590	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	10465212	10465212	+	IGR	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	10665062	10665062	+	IGR	DEL	C	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	114727551	114727551	+	IGR	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	115106671	115106671	+	IGR	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	124144925	124144925	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	14640645	14640645	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	15451953	15451953	+	IGR	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	157358513	157358513	+	IGR	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	172189510	172189510	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	174350426	174350426	+	IGR	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	44113532	44113532	+	IGR	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	56817432	56817432	+	IGR	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7290846	7290846	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	92225205	92225205	+	IGR	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104466336	104466336	+	IGR	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112683754	112683754	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	114671490	114671490	+	IGR	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	141243818	141243818	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	29069712	29069712	+	IGR	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	56297852	56297852	+	IGR	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	37625735	37625736	+	IGR	DNP	CC	AT	AT			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	48942125	48942125	+	IGR	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55944427	55944427	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56635672	56635672	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57245413	57245413	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62669679	62669679	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62694687	62694687	+	IGR	SNP	C	A	A	rs111597964	by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63574573	63574573	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	6940350	6940350	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	7119365	7119365	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9766951	9766951	+	IGR	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	124301832	124301832	+	IGR	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	128099064	128099064	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	56535728	56535728	+	IGR	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	70771582	70771582	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	107288525	107288525	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	120845197	120845197	+	IGR	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43401049	43401049	+	IGR	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44175356	44175356	+	IGR	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	45376340	45376340	+	IGR	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68357604	68357604	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	71224001	71224001	+	IGR	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90631624	90631624	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	110863347	110863347	+	IGR	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134744889	134744889	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	138529295	138529295	+	IGR	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	46420852	46420852	+	IGR	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65014415	65014415	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	85104421	85104421	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89544778	89544778	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92542936	92542936	+	IGR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13541249	13541249	+	IGR	DEL	C	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAMP3	9341	broad.mit.edu	37	1	7838116	7838116	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFA	7422	broad.mit.edu	37	6	43746589	43746589	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VENTX	27287	broad.mit.edu	37	10	135053656	135053656	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VENTX	27287	broad.mit.edu	37	10	135053658	135053658	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIPAR	63894	broad.mit.edu	37	14	77904245	77904245	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIT	5212	broad.mit.edu	37	2	37010342	37010342	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13A	23230	broad.mit.edu	37	9	79820312	79820312	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS16	64601	broad.mit.edu	37	20	2844140	2844140	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38768381	38768381	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSTM2A	222008	broad.mit.edu	37	7	54636784	54636784	+	3'UTR	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWCE	220001	broad.mit.edu	37	11	61042087	61042087	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	70880763	70880763	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY2	115825	broad.mit.edu	37	13	52158888	52158888	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDHD1	11169	broad.mit.edu	37	14	55475024	55475024	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDHD1	11169	broad.mit.edu	37	14	55475401	55475401	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR47	22911	broad.mit.edu	37	1	109538480	109538480	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167319852	167319852	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR59	79726	broad.mit.edu	37	16	74927609	74927609	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFDC1	58189	broad.mit.edu	37	16	84357953	84357953	+	Intron	SNP	A	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31570317	31570317	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIST	7503	broad.mit.edu	37	X	73067895	73067895	+	RNA	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR4	114786	broad.mit.edu	37	8	56362928	56362928	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO4	64328	broad.mit.edu	37	13	21357750	21357750	+	3'UTR	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO6	23214	broad.mit.edu	37	16	28137079	28137079	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC1	7515	broad.mit.edu	37	19	44047554	44047554	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100349612	100349612	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H13	23091	broad.mit.edu	37	13	46559510	46559510	+	Nonsense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H18	124245	broad.mit.edu	37	16	88688817	88688817	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3HAV1	56829	broad.mit.edu	37	7	138749670	138749670	+	Frame_Shift_Del	DEL	C	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAT	57623	broad.mit.edu	37	8	135614385	135614385	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77617618	77617618	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE1	53349	broad.mit.edu	37	14	73445058	73445058	+	Intron	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM2	23619	broad.mit.edu	37	19	57293202	57293202	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM3	114026	broad.mit.edu	37	19	57654227	57654227	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND8	23613	broad.mit.edu	37	20	45920619	45920619	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF148	7707	broad.mit.edu	37	3	124952110	124952110	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF169	169841	broad.mit.edu	37	9	97063626	97063628	+	In_Frame_Del	DEL	CAG	-	-	rs12350212	byFrequency;by1000genomes	TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF253	56242	broad.mit.edu	37	19	20002661	20002661	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22270984	22270984	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF286A	57335	broad.mit.edu	37	17	15609643	15609643	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF28	7576	broad.mit.edu	37	19	53321172	53321172	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385B	151126	broad.mit.edu	37	2	180347863	180347864	+	Intron	DNP	CC	GT	GT			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385B	151126	broad.mit.edu	37	2	180679233	180679233	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF415	55786	broad.mit.edu	37	19	53612523	53612523	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF425	155054	broad.mit.edu	37	7	148815166	148815166	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF426	79088	broad.mit.edu	37	19	9643421	9643421	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF480	147657	broad.mit.edu	37	19	52825656	52825656	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF525	170958	broad.mit.edu	37	19	53885137	53885137	+	Silent	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF534	147658	broad.mit.edu	37	19	52941638	52941638	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF573	126231	broad.mit.edu	37	19	38287053	38287053	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF609	23060	broad.mit.edu	37	15	64966474	64966474	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF658	26149	broad.mit.edu	37	9	40772696	40772696	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF658	26149	broad.mit.edu	37	9	40774117	40774117	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF667	63934	broad.mit.edu	37	19	56973748	56973748	+	5'UTR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF668	79759	broad.mit.edu	37	16	31072581	31072581	+	Silent	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF676	163223	broad.mit.edu	37	19	22363524	22363524	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF75A	7627	broad.mit.edu	37	16	3363302	3363302	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF761	388561	broad.mit.edu	37	19	53958199	53958199	+	Silent	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF77	58492	broad.mit.edu	37	19	2936786	2936786	+	Intron	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF793	390927	broad.mit.edu	37	19	38028480	38028480	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185798286	185798286	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185801123	185801123	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57766376	57766376	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57767202	57767202	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF841	284371	broad.mit.edu	37	19	52568499	52568499	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF90	7643	broad.mit.edu	37	19	20235932	20235932	+	RNA	SNP	G	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF98	148198	broad.mit.edu	37	19	22574549	22574549	+	Silent	SNP	G	C	C	rs74169609		TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22952648	22952648	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238053709	238053709	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPLD1	131368	broad.mit.edu	37	3	102181147	102181147	+	Nonsense_Mutation	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM2	151112	broad.mit.edu	37	2	187694718	187694718	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM2	151112	broad.mit.edu	37	2	187701943	187701943	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZW10	9183	broad.mit.edu	37	11	113608356	113608357	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZZEF1	23140	broad.mit.edu	37	17	3961350	3961350	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52723139	52723139	+	5'Flank	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	28733848	28733848	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102312789	102312789	+	5'Flank	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25480993	25480993	+	5'Flank	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25496274	25496274	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	76072761	76072761	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	5339402	5339402	+	Intron	SNP	G	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	26596349	26596349	+	5'Flank	DEL	G	-	-			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	37183776	37183776	+	5'Flank	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	45560301	45560301	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	24115278	24115279	+	Intron	DNP	GG	TT	TT			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148888406	148888406	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	151995001	151995001	+	Intron	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159375401	159375401	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89925908	89925908	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90007969	90007969	+	RNA	SNP	C	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	187250507	187250507	+	Intron	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69337095	69337095	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	12794396	12794396	+	Intron	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9932864	9932864	+	Intron	SNP	T	C	C			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142028194	142028194	+	Intron	SNP	T	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142099717	142099717	+	Intron	SNP	A	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	40610067	40610067	+	5'UTR	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	122696318	122696318	+	5'Flank	SNP	C	A	A			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	51150166	51150166	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	51150497	51150497	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4668-01A-01D-1265-08	TCGA-73-4668-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
