Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABI3BP	25890	genome.wustl.edu	37	3	100595385	100595396	+	In_Frame_Del	DEL	TTCCTTGGGACA	TTCCTTGGGACA	-	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	TTCCTTGGGACA	TTCCTTGGGACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	100595385	100595396	TTCCTTGGGACA	-	DEL	ABI3BP	NM_015429	human	genbank	57_37b	-1	validated	in_frame_del	c.737_726	p.YVPRKLIP242in_frame_del*	0.699:0.732:0.727:0.741:0.985:0.997:1.000:0.996:0.978:0.946:0.618:0.542	NULL	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	(deletion:cds_exon[100595356,100595404])	no_errors
ADCYAP1R1	117	genome.wustl.edu	37	7	31142941	31142947	+	Frame_Shift_Del	DEL	GGAAAGA	GGAAAGA	-	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	GGAAAGA	GGAAAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	31142941	31142947	GGAAAGA	-	DEL	ADCYAP1R1	NM_001118	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1137_1143	p.R379fs	1.000:1.000:1.000:0.998:1.000:1.000:0.999	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2	superfamily_Hormone receptor domain (HRM Pfam 02793),HMMSmart_SM00008,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	(deletion:cds_exon[31142851,31142980])	no_errors
ADCYAP1R1	117	genome.wustl.edu	37	7	31142951	31142970	+	Frame_Shift_Del	DEL	GTGTTTGAGCTGGGGCTGGG	GTGTTTGAGCTGGGGCTGGG	-	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	GTGTTTGAGCTGGGGCTGGG	GTGTTTGAGCTGGGGCTGGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	31142951	31142970	GTGTTTGAGCTGGGGCTGGG	-	DEL	ADCYAP1R1	NM_001118	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1147_1166	p.V383fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.143:0.997:1.000:1.000:1.000:1.000	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_2,HMMPfam_HRM,HMMSmart_SM00008,PatternScan_G_PROTEIN_RECEP_F2_1,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_Hormone receptor domain (HRM Pfam 02793),superfamily_Family A G protein-coupled receptor-like	(deletion:cds_exon[31142851,31142980])	no_errors
ADCYAP1R1	117	genome.wustl.edu	37	7	31142972	31142973	+	Frame_Shift_Ins	INS	-	-	AA	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	31142972	31142973	-	AA	INS	ADCYAP1R1	NM_001118	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1168_1169	p.S390fs	1.000:1.000	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_2,HMMPfam_HRM,HMMSmart_SM00008,PatternScan_G_PROTEIN_RECEP_F2_1,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_Hormone receptor domain (HRM Pfam 02793),superfamily_Family A G protein-coupled receptor-like	-	no_errors
AFAP1L1	134265	genome.wustl.edu	37	5	148691774	148691774	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	148691774	148691774	C	T	SNP	AFAP1L1	ENST00000455574	human	ensembl	57_37b	+1	known	silent	c.1027	p.L343	0.030	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors
ATP8B4	79895	genome.wustl.edu	37	15	50273432	50273432	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	50273432	50273432	C	G	SNP	ATP8B4	NM_024837	human	genbank	57_37b	-1	validated	missense	c.808	p.D270H	1.000	superfamily_SSF81665,HMMPfam_E1-E2_ATPase	superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Hydrolase_3	-	no_errors
BRMS1	25855	genome.wustl.edu	37	11	66107594	66107594	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66107594	66107594	G	C	SNP	BRMS1	NM_001024957	human	genbank	57_37b	-1	reviewed	missense	c.626	p.S209C	1.000	HMMPfam_Sds3	HMMPfam_Sds3	-	no_errors
BRWD3	254065	genome.wustl.edu	37	X	79990631	79990631	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	79990631	79990631	C	T	SNP	BRWD3	NM_153252	human	genbank	57_37b	-1	validated	missense	c.980	p.S327N	1.000	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320	HMMSmart_SM00320,HMMPfam_WD40,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_WD_REPEATS_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain	-	no_errors
C12orf32	83695	genome.wustl.edu	37	12	2994559	2994559	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	2994559	2994559	G	T	SNP	C12orf32	ENST00000303648	human	ensembl	57_37b	+1	known	missense	c.27	p.Q9H	0.000	NULL	NULL	-	no_errors
CBFB	865	genome.wustl.edu	37	16	67070595	67070595	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67070595	67070595	G	A	SNP	CBFB	NM_022845	human	genbank	57_37b	+1	reviewed	nonsense	c.219	p.W73*	1.000	HMMPfam_CBF_beta,superfamily_CBF_beta	HMMPfam_CBF_beta,superfamily_CBF_beta	-	no_errors
CD163L1	283316	genome.wustl.edu	37	12	7559293	7559293	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	7559293	7559293	C	T	SNP	CD163L1	NM_174941	human	genbank	57_37b	-1	reviewed	missense	c.922	p.A308T	0.136	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1	-	no_errors
CDH1	999	genome.wustl.edu	37	16	68856129	68856129	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68856129	68856129	G	A	SNP	CDH1	NM_004360	human	genbank	57_37b	+1	reviewed	splice_site	c.1936+1	e12+1	0.996	-	-	-	no_errors
CHL1	10752	genome.wustl.edu	37	3	370003	370003	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	370003	370003	C	T	SNP	CHL1	NM_006614	human	genbank	57_37b	+1	reviewed	silent	c.351	p.I117	0.622	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060	-	no_errors
CLEC11A	6320	genome.wustl.edu	37	19	51226792	51226792	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51226792	51226792	G	A	SNP	CLEC11A	NM_002975	human	genbank	57_37b	+1	reviewed	missense	c.10	p.A4T	1.000	NULL	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors
CLTC	1213	genome.wustl.edu	37	17	57746199	57746199	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	57746199	57746199	A	G	SNP	CLTC	NM_004859	human	genbank	57_37b	+1	reviewed	silent	c.2190	p.K730	1.000	superfamily_ARM repeat,superfamily_Protein prenylyltransferase,HMMPfam_Clathrin,HMMSmart_SM00299	superfamily_Clathrin heavy-chain terminal domain,HMMPfam_Clathrin_propel,HMMPfam_Clathrin-link,superfamily_ARM repeat,HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_Protein prenylyltransferase	-	no_errors
CRTAC1	55118	genome.wustl.edu	37	10	99696026	99696026	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	99696026	99696026	G	A	SNP	CRTAC1	NM_018058	human	genbank	57_37b	-1	validated	missense	c.322	p.R108W	1.000	superfamily_Integrin alpha N-terminal domain	superfamily_Integrin alpha N-terminal domain,HMMPfam_FG-GAP,HMMPfam_UnbV_ASPIC,superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179	-	no_errors
CRYM	1428	genome.wustl.edu	37	16	21288757	21288757	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	21288757	21288757	G	T	SNP	CRYM	NM_001888	human	genbank	57_37b	-1	reviewed	missense	c.319	p.L107M	1.000	HMMPfam_OCD_Mu_crystall,superfamily_NAD(P)-binding Rossmann-fold domains	HMMPfam_OCD_Mu_crystall,superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
CSGALNACT1	55790	genome.wustl.edu	37	8	19315248	19315248	+	RNA	SNP	T	T	A	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	19315248	19315248	T	A	SNP	CSGALNACT1	NR_024040	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.001	-	-	-	no_errors
CYP4B1	1580	genome.wustl.edu	37	1	47279655	47279655	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	47279655	47279655	A	C	SNP	CYP4B1	NM_001099772	human	genbank	57_37b	+1	reviewed	missense	c.695	p.Y232S	1.000	superfamily_Cytochrome_P450,HMMPfam_p450	superfamily_Cytochrome_P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	-	no_errors
DCAF12L1	139170	genome.wustl.edu	37	X	125685656	125685656	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	125685656	125685656	C	G	SNP	DCAF12L1	NM_178470	human	genbank	57_37b	-1	reviewed	silent	c.936	p.L312	1.000	superfamily_WD40_like	PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	-	no_errors
DDX53	168400	genome.wustl.edu	37	X	23019754	23019754	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	23019754	23019754	T	G	SNP	DDX53	NM_182699	human	genbank	57_37b	+1	validated	missense	c.1580	p.V527G	0.992	superfamily_SSF52540,HMMSmart_HELICc,HMMPfam_Helicase_C	superfamily_SSF54791,HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C	-	no_errors
DENND1B	163486	genome.wustl.edu	37	1	197479779	197479779	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	197479779	197479779	A	T	SNP	DENND1B	NM_001142795	human	genbank	57_37b	-1	validated	missense	c.2079	p.D693E	0.855	NULL	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801	-	no_errors
DGAT2L6	347516	genome.wustl.edu	37	X	69397492	69397492	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	69397492	69397492	A	G	SNP	DGAT2L6	NM_198512	human	genbank	57_37b	+1	provisional	silent	c.60	p.Q20	0.000	NULL	HMMPfam_DAGAT	-	no_errors
DST	667	genome.wustl.edu	37	6	56330983	56330983	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	56330983	56330983	G	T	SNP	DST	NM_001144769	human	genbank	57_37b	-1	reviewed	missense	c.16223	p.S5408Y	1.000	HMMPfam_GAS2,HMMSmart_SM00243	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,HMMPfam_Spectrin,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_GAS2,HMMSmart_SM00243	-	no_errors
DSTYK	25778	genome.wustl.edu	37	1	205116809	205116809	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	205116809	205116809	C	G	SNP	DSTYK	NM_015375	human	genbank	57_37b	-1	reviewed	missense	c.2667	p.W889C	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
EFCAB5	374786	genome.wustl.edu	37	17	28380487	28380487	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	28380487	28380487	G	T	SNP	EFCAB5	NM_198529	human	genbank	57_37b	+1	validated	silent	c.1515	p.P505	0.007	superfamily_EF-hand	superfamily_EF-hand,PatternScan_EF_HAND_1	-	no_errors
ENSG00000205482	0	genome.wustl.edu	37	7	76682489	76682489	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	76682489	76682489	C	G	SNP	ENSG00000205482	ENST00000445314	human	ensembl	57_37b	-1	known	missense	c.667	p.E223Q	0.004	NULL	NULL	-	no_errors
ENSG00000214210	0	genome.wustl.edu	37	3	163719647	163719647	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	163719647	163719647	G	C	SNP	ENSG00000214210	ENST00000397815	human	ensembl	57_37b	-1	known	missense	c.293	p.P98R	0.215	HMMPfam_Neugrin	HMMPfam_Neugrin	-	no_errors
ENSG00000246512	0	genome.wustl.edu	37	18	43479136	43479136	+	RNA	SNP	C	C	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	43479136	43479136	C	G	SNP	ENSG00000246512	ENST00000499212	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.023	-	-	-	no_errors
ENSG00000247866	0	genome.wustl.edu	37	1	180151034	180151034	+	RNA	SNP	C	C	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	180151034	180151034	C	G	SNP	ENSG00000247866	ENST00000500066	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
FAM47C	442444	genome.wustl.edu	37	X	37028375	37028375	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	37028375	37028375	G	A	SNP	FAM47C	NM_001013736	human	genbank	57_37b	+1	provisional	missense	c.1892	p.R631H	0.024	NULL	NULL	-	no_errors
FAT3	120114	genome.wustl.edu	37	11	92531848	92531851	+	Frame_Shift_Del	DEL	CTAT	CTAT	-	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	CTAT	CTAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	92531848	92531851	CTAT	-	DEL	FAT3	NM_001008781	human	genbank	57_37b	+1	validated	frame_shift_del	c.5669_5672	p.I1891fs	1.000:0.033:0.511:0.941	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	(deletion:cds_exon[92531002,92535075])	no_errors
FCGBP	8857	genome.wustl.edu	37	19	40367763	40367763	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	40367763	40367763	A	G	SNP	FCGBP	NM_003890	human	genbank	57_37b	-1	validated	silent	c.13197	p.A4399	0.000	superfamily_Cysrich_TIL,HMMPfam_TIL	HMMSmart_FOLN,HMMSmart_VWD,HMMPfam_VWD,HMMPfam_C8,superfamily_Cysrich_TIL,HMMPfam_TIL,HMMPfam_TIL_assoc,HMMSmart_VWC	-	no_errors
FMR1NB	158521	genome.wustl.edu	37	X	147084783	147084783	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	147084783	147084783	C	T	SNP	FMR1NB	NM_152578	human	genbank	57_37b	+1	validated	nonsense	c.340	p.Q114*	0.000	NULL	NULL	-	no_errors
FN3KRP	79672	genome.wustl.edu	37	17	80684731	80684731	+	Missense_Mutation	SNP	G	G	A	rs111958189	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	80684731	80684731	G	A	SNP	FN3KRP	NM_024619	human	genbank	57_37b	+1	validated	missense	c.614	p.R205H	0.001	superfamily_Kinase_like	superfamily_Kinase_like,HMMPfam_Fructosamin_kin	-	
FOXN1	8456	genome.wustl.edu	37	17	26861801	26861801	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	26861801	26861801	G	A	SNP	FOXN1	NM_003593	human	genbank	57_37b	+1	reviewed	silent	c.1212	p.L404	0.806	NULL	"HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
GALR1	2587	genome.wustl.edu	37	18	74962829	74962829	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	74962829	74962829	A	G	SNP	GALR1	NM_001480	human	genbank	57_37b	+1	reviewed	missense	c.325	p.K109E	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
GFM1	85476	genome.wustl.edu	37	3	158370027	158370027	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	158370027	158370027	G	T	SNP	GFM1	NM_024996	human	genbank	57_37b	+1	reviewed	missense	c.832	p.D278Y	1.000	superfamily_SSF52540,HMMPfam_GTP_EFTU	superfamily_SSF52540,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,superfamily_EFG_III_V,superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_EFG_IV,HMMPfam_EFG_C	-	no_errors
GPR112	139378	genome.wustl.edu	37	X	135404976	135404983	+	Frame_Shift_Del	DEL	GAAGAGGT	GAAGAGGT	-	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	GAAGAGGT	GAAGAGGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	135404976	135404983	GAAGAGGT	-	DEL	GPR112	NM_153834	human	genbank	57_37b	+1	validated	frame_shift_del	c.110_117	p.R38fs	0.844:0.726:0.434:0.365:0.331:0.001:0.002:0.004	superfamily_ConA_like_lec_gl	superfamily_ConA_like_lec_gl,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	(deletion:cds_exon[135404937,135405551])	no_errors
GUCA1C	9626	genome.wustl.edu	37	3	108639378	108639378	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	108639378	108639378	C	G	SNP	GUCA1C	NM_005459	human	genbank	57_37b	-1	validated	missense	c.259	p.E87Q	0.998	superfamily_EF-hand	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
HECTD1	25831	genome.wustl.edu	37	14	31605846	31605846	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	31605846	31605846	C	T	SNP	HECTD1	NM_015382	human	genbank	57_37b	-1	validated	missense	c.3005	p.R1002Q	1.000	NULL	superfamily_ARM repeat,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Galactose-binding domain-like,HMMPfam_Sad1_UNC,HMMPfam_MIB_HERC2,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
HECW1	23072	genome.wustl.edu	37	7	43591930	43591930	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	43591930	43591930	G	A	SNP	HECW1	NM_015052	human	genbank	57_37b	+1	validated	missense	c.4505	p.R1502Q	1.000	superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors
HMCN1	83872	genome.wustl.edu	37	1	186014957	186014957	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	186014957	186014957	C	G	SNP	HMCN1	NM_031935	human	genbank	57_37b	+1	reviewed	missense	c.6442	p.P2148A	1.000	HMMSmart_SM00406,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_vWA-like,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408,HMMPfam_I-set,HMMSmart_SM00406,PatternScan_CECROPIN,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00682,HMMPfam_G2F,superfamily_GFP-like,PatternScan_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMPfam_EGF_CA,PatternScan_EGF_2	-	no_errors
ICA1	3382	genome.wustl.edu	37	7	8196560	8196578	+	Frame_Shift_Del	DEL	AAAAAAAAAAAAAAAAAAA	AAAAAAAAAAAAAAAAAAA	-	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	AAAAAAAAAAAAAAAAAAA	AAAAAAAAAAAAAAAAAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	8196560	8196578	AAAAAAAAAAAAAAAAAAA	-	DEL	ICA1	ENST00000407906	human	ensembl	57_37b	-1	known	frame_shift_del	c.990_972	p.F324fs	0.000:0.000:0.000:0.002:0.002:0.004:0.005:0.008:0.013:0.018:0.022:0.026:0.029:0.033:0.021:0.016:0.011:0.005:0.002	NULL	HMMPfam_Arfaptin	(deletion:cds_exon[8196497,8196844])	no_errors
IDO2	169355	genome.wustl.edu	37	8	39872802	39872802	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	39872802	39872802	C	A	SNP	IDO2	NM_194294	human	genbank	57_37b	+1	validated	missense	c.944	p.P315H	1.000	HMMPfam_IDO	HMMPfam_IDO	-	no_errors
ITPR1	3708	genome.wustl.edu	37	3	4730242	4730242	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	4730242	4730242	G	A	SNP	ITPR1	NM_001099952	human	genbank	57_37b	+1	reviewed	missense	c.3739	p.A1247T	0.998	HMMPfam_RYDR_ITPR	HMMPfam_Ins145_P3_rec,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472,HMMPfam_MIR,superfamily_IP3 receptor type 1 binding core domain 2,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans	-	no_errors
KEAP1	9817	genome.wustl.edu	37	19	10600498	10600499	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10600498	10600499	-	T	INS	KEAP1	NM_012289	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.1357_1356	p.V452fs	1.000:1.000	superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch	-	no_errors
KEAP1	9817	genome.wustl.edu	37	19	10600502	10600502	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10600502	10600502	G	-	DEL	KEAP1	NM_012289	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1353	p.L452fs	0.990	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central	HMMSmart_BTB,HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central,superfamily_BTB/POZ_fold,HMMPfam_BACK,HMMPfam_BTB	(deletion:cds_exon[10600324,10600529])	no_errors
KIAA1530	57654	genome.wustl.edu	37	4	1377615	1377615	+	Silent	SNP	A	A	G	rs9996817	byCluster;by1000genomes	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	1377615	1377615	A	G	SNP	KIAA1530	NM_020894	human	genbank	57_37b	+1	validated	silent	c.1923	p.S641	0.000	NULL	HMMPfam_DUF2043	-	
KIF13A	63971	genome.wustl.edu	37	6	17781438	17781438	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	17781438	17781438	G	C	SNP	KIF13A	NM_022113	human	genbank	57_37b	-1	validated	nonsense	c.3639	p.Y1213*	1.000	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD/FHA domain,HMMPfam_FHA	-	no_errors
KLC4	89953	genome.wustl.edu	37	6	43038519	43038519	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43038519	43038519	A	T	SNP	KLC4	NM_201523	human	genbank	57_37b	+1	validated	missense	c.1125	p.E375D	0.907	superfamily_TPR-like,PatternScan_KINESIN_LIGHT,HMMPfam_TPR_1,HMMSmart_SM00028	superfamily_TPR-like,HMMPfam_Rab5-bind,HMMPfam_TPR_1,HMMSmart_SM00028,PatternScan_KINESIN_LIGHT	-	no_errors
KRT9	3857	genome.wustl.edu	37	17	39728035	39728035	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39728035	39728035	G	T	SNP	KRT9	NM_000226	human	genbank	57_37b	-1	reviewed	silent	c.210	p.G70	0.000	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors
L3MBTL4	91133	genome.wustl.edu	37	18	6093468	6093468	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	6093468	6093468	C	T	SNP	L3MBTL4	NM_173464	human	genbank	57_37b	-1	validated	missense	c.1259	p.R420H	0.401	superfamily_SSF103637	superfamily_SSF63748,HMMSmart_MBT,HMMPfam_MBT,superfamily_SSF103637,HMMPfam_zf-C2HC,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1	-	no_errors
LOC100289403	0	genome.wustl.edu	37	X	48457210	48457210	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48457210	48457210	G	A	SNP	LOC100289403	XM_002343810	human	genbank	57_37b	-1	model	missense	c.925	p.R309C	0.709	NULL	NULL	-	no_errors
LOC340268	340268	genome.wustl.edu	37	7	9767844	9767844	+	RNA	SNP	C	T	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	9767844	9767844	C	T	SNP	LOC340268	XR_041608	human	genbank	57_37b	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
LOC442132	442132	genome.wustl.edu	37	5	7300183	7300183	+	RNA	SNP	T	T	C	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	7300183	7300183	T	C	SNP	LOC442132	XR_040018	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.275	-	-	-	no_errors
LOC644717	644717	genome.wustl.edu	37	X	134809749	134809749	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	134809749	134809749	G	A	SNP	LOC644717	XM_002343850	human	genbank	57_37b	-1	model	missense	c.1025	p.T342I	0.000	NULL	NULL	-	no_errors
LOC730110	730110	genome.wustl.edu	37	9	35147418	35147418	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35147418	35147418	C	G	SNP	LOC730110	XM_002342891	human	genbank	57_37b	-1	model	missense	c.1618	p.E540Q	1.000	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LRCH2	57631	genome.wustl.edu	37	X	114400906	114400906	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	114400906	114400906	C	A	SNP	LRCH2	NM_020871	human	genbank	57_37b	-1	validated	splice_site	c.999-1	e7-1	1.000	-	-	-	no_errors
MDM4	4194	genome.wustl.edu	37	1	204519187	204519187	+	RNA	SNP	C	C	G	rs4252745	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	204519187	204519187	C	G	SNP	MDM4	NR_024171	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.002	-	-	-	
MUM1L1	139221	genome.wustl.edu	37	X	105449486	105449492	+	Frame_Shift_Del	DEL	TCCAGAT	TCCAGAT	-	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	TCCAGAT	TCCAGAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	105449486	105449492	TCCAGAT	-	DEL	MUM1L1	ENST00000337685	human	ensembl	57_37b	+1	known	frame_shift_del	c.61_67	p.S21fs	0.334:0.272:0.039:0.024:0.016:0.015:0.086	NULL	superfamily_SSF63748	(deletion:cds_exon[105449426,105451516])	no_errors
MYH7	4625	genome.wustl.edu	37	14	23885466	23885466	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23885466	23885466	T	G	SNP	MYH7	NM_000257	human	genbank	57_37b	-1	reviewed	missense	c.4700	p.Q1567P	1.000	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Prefoldin,HMMPfam_Myosin_tail_1	-	no_errors
OPRM1	4988	genome.wustl.edu	37	6	154360648	154360654	+	Frame_Shift_Del	DEL	CGCACAG	CGCACAG	-	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	CGCACAG	CGCACAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	154360648	154360654	CGCACAG	-	DEL	OPRM1	NM_001145279	human	genbank	57_37b	+1	validated	frame_shift_del	c.248_254	p.H84fs	0.002:0.000:0.002:0.000:0.000:0.000:0.000	NULL	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	(deletion:cds_exon[154360546,154360969])	no_errors
OR5A2	219981	genome.wustl.edu	37	11	59190301	59190301	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	59190301	59190301	C	G	SNP	OR5A2	NM_001001954	human	genbank	57_37b	-1	provisional	missense	c.126	p.W42C	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PAGE1	8712	genome.wustl.edu	37	X	49454040	49454040	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	49454040	49454040	C	T	SNP	PAGE1	NM_003785	human	genbank	57_37b	-1	reviewed	silent	c.399	p.E133	0.000	NULL	HMMPfam_GAGE	-	no_errors
PCDH11X	27328	genome.wustl.edu	37	X	91873468	91873468	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	91873468	91873468	G	T	SNP	PCDH11X	NM_032968	human	genbank	57_37b	+1	reviewed	missense	c.3573	p.Q1191H	0.674	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Protocadherin	-	no_errors
PCID2	55795	genome.wustl.edu	37	13	113851457	113851457	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	113851457	113851457	T	C	SNP	PCID2	ENST00000246505	human	ensembl	57_37b	-1	known	missense	c.301	p.R101G	0.000	NULL	HMMSmart_PAM,HMMPfam_PCI	-	no_errors
PIR	8544	genome.wustl.edu	37	X	15474117	15474117	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	15474117	15474117	G	C	SNP	PIR	NM_001018109	human	genbank	57_37b	-1	reviewed	missense	c.334	p.H112D	0.999	superfamily_RmlC_like_cupin,HMMPfam_Pirin	superfamily_RmlC_like_cupin,HMMPfam_Pirin,HMMPfam_Pirin_C	-	no_errors
PLCG2	5336	genome.wustl.edu	37	16	81925132	81925132	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	81925132	81925132	C	T	SNP	PLCG2	NM_002661	human	genbank	57_37b	+1	validated	missense	c.923	p.A308V	0.915	superfamily_SSF47473	superfamily_SSF50729,HMMSmart_PH,HMMPfam_PH,superfamily_SSF47473,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
PLEKHH2	130271	genome.wustl.edu	37	2	43927079	43927079	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	43927079	43927079	G	A	SNP	PLEKHH2	NM_172069	human	genbank	57_37b	+1	validated	missense	c.982	p.A328T	1.000	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00139,HMMPfam_MyTH4,HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M	-	no_errors
POLE	5426	genome.wustl.edu	37	12	133226423	133226423	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	133226423	133226423	A	G	SNP	POLE	NM_006231	human	genbank	57_37b	-1	validated	missense	c.3635	p.M1212T	1.000	NULL	superfamily_RNaseH_fold,HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,HMMPfam_DNA_pol_B,superfamily_SSF56672,HMMPfam_DUF1744	-	no_errors
QTRT1	81890	genome.wustl.edu	37	19	10823940	10823940	+	Silent	SNP	G	G	T	rs11672431	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10823940	10823940	G	T	SNP	QTRT1	NM_031209	human	genbank	57_37b	+1	validated	silent	c.1206	p.L402	0.092	NULL	superfamily_tRNA_ribo_trans,HMMPfam_TGT	-	
RB1	5925	genome.wustl.edu	37	13	49030343	49030343	+	Nonsense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	49030343	49030343	T	G	SNP	RB1	NM_000321	human	genbank	57_37b	+1	reviewed	nonsense	c.1818	p.Y606*	1.000	NULL	HMMPfam_RB_A,superfamily_Cyclin-like,HMMPfam_RB_B,HMMSmart_SM00385,HMMPfam_Rb_C	-	no_errors
RBBP6	5930	genome.wustl.edu	37	16	24582883	24582883	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	24582883	24582883	A	G	SNP	RBBP6	NM_006910	human	genbank	57_37b	+1	reviewed	missense	c.4496	p.D1499G	1.000	NULL	HMMPfam_DWNN,superfamily_Retrovirus zinc finger-like domains,HMMPfam_zf-CCHC,HMMSmart_SM00343,superfamily_RING/U-box,HMMPfam_U-box,HMMSmart_SM00184	-	no_errors
RBM12	10137	genome.wustl.edu	37	20	34240663	34240663	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	34240663	34240663	T	A	SNP	RBM12	NM_006047	human	genbank	57_37b	-1	reviewed	missense	c.2582	p.Q861L	1.000	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
RIC8A	60626	genome.wustl.edu	37	11	213293	213301	+	Splice_Site	DEL	AAACAGCAT	AAACAGCAT	-	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	AAACAGCAT	AAACAGCAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	213293	213301	AAACAGCAT	-	DEL	RIC8A	NM_021932	human	genbank	57_37b	+1	provisional	splice_site_del	c.1374-6_1374-1	e9-1	0.880:0.761:0.690:0.989:1.000:1.000:1.000:1.000:1.000	-	-	(deletion:intron[212982,213298], cds_exon[213299,213418])	no_errors
RYR2	6262	genome.wustl.edu	37	1	237791276	237791276	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	237791276	237791276	C	T	SNP	RYR2	NM_001035	human	genbank	57_37b	+1	reviewed	silent	c.6336	p.S2112	0.002	NULL	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors
SH3TC2	79628	genome.wustl.edu	37	5	148427522	148427522	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	148427522	148427522	C	T	SNP	SH3TC2	NM_024577	human	genbank	57_37b	-1	reviewed	missense	c.182	p.R61H	1.000	NULL	superfamily_SH3-domain,HMMPfam_SH3_2,HMMPfam_SH3_1,HMMSmart_SM00326,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1	-	no_errors
SHC2	25759	genome.wustl.edu	37	19	434769	434769	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	434769	434769	G	A	SNP	SHC2	NM_012435	human	genbank	57_37b	-1	validated	silent	c.1050	p.G350	0.998	NULL	superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2	-	no_errors
SLC27A1	376497	genome.wustl.edu	37	19	17597396	17597396	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17597396	17597396	G	A	SNP	SLC27A1	NM_198580	human	genbank	57_37b	+1	provisional	silent	c.192	p.V64	0.963	NULL	superfamily_SSF56801,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors
SNTG2	54221	genome.wustl.edu	37	2	1251147	1251147	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	1251147	1251147	T	G	SNP	SNTG2	NM_018968	human	genbank	57_37b	+1	reviewed	missense	c.937	p.S313A	0.000	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
SP6	80320	genome.wustl.edu	37	17	45924911	45924911	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	45924911	45924911	G	A	SNP	SP6	NM_199262	human	genbank	57_37b	-1	validated	silent	c.885	p.F295	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
SYMPK	8189	genome.wustl.edu	37	19	46332318	46332318	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46332318	46332318	G	T	SNP	SYMPK	NM_004819	human	genbank	57_37b	-1	reviewed	missense	c.1895	p.A632D	0.626	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors
SYT2	127833	genome.wustl.edu	37	1	202571070	202571070	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	202571070	202571070	A	T	SNP	SYT2	NM_001136504	human	genbank	57_37b	-1	validated	missense	c.749	p.L250H	1.000	superfamily_C2_CaLB,HMMSmart_C2	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
TMEM131	23505	genome.wustl.edu	37	2	98409376	98409376	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	98409376	98409376	G	C	SNP	TMEM131	NM_015348	human	genbank	57_37b	-1	validated	missense	c.3617	p.P1206R	0.104	NULL	NULL	-	no_errors
TMTC1	83857	genome.wustl.edu	37	12	29709922	29709922	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	29709922	29709922	C	T	SNP	TMTC1	NM_175861	human	genbank	57_37b	-1	provisional	missense	c.1220	p.R407H	0.902	superfamily_Protein prenylyltransferase,HMMPfam_TPR_2,HMMSmart_SM00028	HMMPfam_DUF1736,HMMSmart_SM00386,superfamily_Protein prenylyltransferase,HMMPfam_TPR_2,HMMSmart_SM00028,HMMPfam_TPR_1,superfamily_TPR-like	-	no_errors
TNFAIP6	7130	genome.wustl.edu	37	2	152214261	152214261	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	152214261	152214261	C	A	SNP	TNFAIP6	NM_007115	human	genbank	57_37b	+1	reviewed	missense	c.81	p.N27K	1.000	NULL	HMMSmart_SM00445,HMMPfam_Xlink,superfamily_C-type lectin-like,PatternScan_LINK_1,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	-	no_errors
TNFSF8	944	genome.wustl.edu	37	9	117692389	117692389	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	117692389	117692389	C	G	SNP	TNFSF8	NM_001244	human	genbank	57_37b	-1	reviewed	silent	c.195	p.T65	1.000	NULL	superfamily_TNF-like,HMMSmart_SM00207,HMMPfam_TNF,PatternScan_TNF_1	-	no_errors
TNS1	7145	genome.wustl.edu	37	2	218713217	218713217	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	218713217	218713217	T	C	SNP	TNS1	NM_022648	human	genbank	57_37b	-1	reviewed	missense	c.1648	p.M550V	0.000	NULL	superfamily_SSF52799,HMMPfam_PTEN_C2,superfamily_C2_CaLB,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PTB	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179584289	179584289	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179584289	179584289	T	C	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.20198	p.H6733R	0.974	HMMPfam_I-set,HMMSmart_SM00409	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
UBE3C	9690	genome.wustl.edu	37	7	157041140	157041140	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	157041140	157041140	G	A	SNP	UBE3C	NM_014671	human	genbank	57_37b	+1	validated	missense	c.2560	p.V854M	1.000	superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	HMMSmart_SM00015,HMMPfam_IQ,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
UBR4	23352	genome.wustl.edu	37	1	19419810	19419810	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	19419810	19419810	T	A	SNP	UBR4	NM_020765	human	genbank	57_37b	-1	validated	missense	c.14108	p.K4703M	1.000	superfamily_ARM repeat	superfamily_ARM repeat,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-UBR,HMMSmart_SM00396,PatternScan_ASP_GLU_RACEMASE_1	-	no_errors
UNC13A	23025	genome.wustl.edu	37	19	17741462	17741462	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17741462	17741462	C	G	SNP	UNC13A	NM_001080421	human	genbank	57_37b	-1	validated	splice_site	c.3789+1	e30+1	1.000	-	-	-	no_errors
USH2A	7399	genome.wustl.edu	37	1	215844496	215844496	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	215844496	215844496	G	C	SNP	USH2A	NM_206933	human	genbank	57_37b	-1	reviewed	missense	c.13951	p.P4651A	1.000	HMMSmart_SM00060	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
VAT1L	57687	genome.wustl.edu	37	16	77859253	77859253	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	77859253	77859253	T	G	SNP	VAT1L	NM_020927	human	genbank	57_37b	+1	provisional	silent	c.474	p.A158	0.905	superfamily_GroES_like,superfamily_NAD(P)-bd	superfamily_GroES_like,HMMPfam_ADH_N,superfamily_NAD(P)-bd,HMMPfam_ADH_zinc_N,PatternScan_QOR_ZETA_CRYSTAL	-	no_errors
WNT5A	7474	genome.wustl.edu	37	3	55513565	55513565	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	55513565	55513565	C	T	SNP	WNT5A	NM_003392	human	genbank	57_37b	-1	reviewed	silent	c.168	p.Q56	1.000	NULL	HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1	-	no_errors
ZCCHC5	203430	genome.wustl.edu	37	X	77913268	77913268	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A09W-01A-11W-A019-09	TCGA-A8-A09W-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	77913268	77913268	T	A	SNP	ZCCHC5	NM_152694	human	genbank	57_37b	-1	reviewed	missense	c.650	p.E217V	0.001	NULL	HMMPfam_zf-CCHC,HMMSmart_ZnF_C2HC	-	no_errors
