Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
HPSE2	60495	broad.mit.edu	36	10	100982170	100982170	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166246	exon2	c.T373C	p.F125L	.	.	.
HPSE2	60495	broad.mit.edu	36	10	100985338	100985338	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166246	exon1	c.T212C	p.V71A	.	.	.
SLC25A28	81894	broad.mit.edu	36	10	101363507	101363507	+	De_novo_Start_InFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031212	exon2	c.C456T	p.Y152Y	.	.	.
ABCC2	1244	broad.mit.edu	36	10	101546943	101546943	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000392	exon7	c.G732A	p.T244T	.	.	.
ABCC2	1244	broad.mit.edu	36	10	101567078	101567078	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000392	exon17	c.G2118A	p.Q706Q	.	.	.
DNMBP	23268	broad.mit.edu	36	10	101629986	101629986	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015221	exon16	c.T4120C	p.F1374L	.	.	.
DNMBP	23268	broad.mit.edu	36	10	101706410	101706410	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015221	exon4	c.C811A	p.R271R	.	.	.
SEC31B	25956	broad.mit.edu	36	10	102246008	102246008	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015490	exon18	c.T2307G	p.A769A	.	.	.
SEMA4G	57715	broad.mit.edu	36	10	102730939	102730939	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017893	exon13	c.G1668A	p.E556E	.	.	.
LBX1	10660	broad.mit.edu	36	10	102977337	102977337	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006562	exon2	c.C526T	p.R176W	.	.	.
BTRC	8945	broad.mit.edu	36	10	103281064	103281064	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003939	exon6	c.T716G	p.I239S	.	.	.
SFXN2	118980	broad.mit.edu	36	10	104482637	104482637	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178858	exon9	c.G753T	p.E251D	.	.	.
INA	9118	broad.mit.edu	36	10	105038355	105038355	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032727	exon3	c.C1439A	p.S480Y	.	.	.
SH3PXD2A	9644	broad.mit.edu	36	10	105351761	105351761	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014631	exon14	c.C3120A	p.F1040L	.	.	.
OBFC1	79991	broad.mit.edu	36	10	105638820	105638820	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024928	exon9	c.C949T	p.H317Y	.	.	.
OBFC1	79991	broad.mit.edu	36	10	105660302	105660302	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024928	exon3	c.G202T	p.E68X	.	.	.
CCDC147	159686	broad.mit.edu	36	10	106143195	106143195	+	Missense_Mutation	SNP	G	A	A	rs61732088	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008723	exon11	c.G1646A	p.R549Q	.	.	.
SORCS3	22986	broad.mit.edu	36	10	107006617	107006617	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014978	exon25	c.C3388T	p.L1130L	.	.	.
SORCS1	114815	broad.mit.edu	36	10	108449090	108449090	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052918	exon9	c.G1285T	p.E429X	.	.	.
XPNPEP1	7511	broad.mit.edu	36	10	111637811	111637811	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167604	exon7	c.G638A	p.G213D	.	.	.
ACSL5	51703	broad.mit.edu	36	10	114163050	114163050	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016234	exon12	c.G1246T	p.D416Y	.	.	.
TCF7L2	6934	broad.mit.edu	36	10	114901543	114901543	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146284	exon9	c.C990A	p.F330L	.	.	.
TCF7L2	6934	broad.mit.edu	36	10	114902110	114902110	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146284	exon10	c.C1109T	p.A370V	.	.	.
TCF7L2	6934	broad.mit.edu	36	10	114915323	114915323	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146285	exon13	c.C1342T	p.R448C	 TCF7L2,large_intestine,colon,Substitution - Missense,0 	.	.
DCLRE1A	9937	broad.mit.edu	36	10	115584933	115584933	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014881	exon9	c.T3091G	p.F1031V	.	.	.
C10orf118	55088	broad.mit.edu	36	10	115912672	115912672	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018017	exon2	c.A346G	p.T116A	.	.	.
TDRD1	56165	broad.mit.edu	36	10	115967364	115967364	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198795	exon17	c.C2283A	p.F761L	.	.	.
ATRNL1	26033	broad.mit.edu	36	10	117298987	117298987	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207303	exon26	c.C3746T	p.A1249V	.	.	.
PNLIP	5406	broad.mit.edu	36	10	118317277	118317277	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000936	exon13	c.C1375A	p.L459M	.	.	.
PNLIPRP1	5407	broad.mit.edu	36	10	118344240	118344240	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006229	exon5	c.C339T	p.F113F	.	.	.
HSPA12A	259217	broad.mit.edu	36	10	118448181	118448181	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025015	exon5	c.A501C	p.E167D	.	.	.
EMX2	2018	broad.mit.edu	36	10	119297637	119297637	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165924	exon2	c.G478A	p.A160T	.	.	.
C10orf84	63877	broad.mit.edu	36	10	120085139	120085139	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134672	exon3	c.T239G	p.F80C	.	.	.
UPF2	26019	broad.mit.edu	36	10	12111142	12111142	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080599	exon3	c.G753T	p.R251S	.	.	.
UPF2	26019	broad.mit.edu	36	10	12111485	12111485	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080599	exon3	c.G410A	p.R137Q	.	.	.
INPP5F	22876	broad.mit.edu	36	10	121557489	121557489	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014937	exon13	c.G1496A	p.R499H	.	.	.
PPAPDC1A	196051	broad.mit.edu	36	10	122206861	122206861	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001030059	exon1	c.C54T	p.F18F	.	.	.
CDC123	8872	broad.mit.edu	36	10	12320469	12320469	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006023	exon10	c.C696T	p.F232F	.	.	.
HTRA1	5654	broad.mit.edu	36	10	124263744	124263744	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002775	exon9	c.C1322T	p.S441F	.	.	.
ACADSB	36	broad.mit.edu	36	10	124787310	124787310	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001609	exon3	c.C260T	p.S87L	.	.	.
ACADSB	36	broad.mit.edu	36	10	124790771	124790771	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001609	exon5	c.G567T	p.K189N	.	.	.
GPR26	2849	broad.mit.edu	36	10	125416532	125416532	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153442	exon1	c.G619A	p.D207N	.	.	.
CHST15	51363	broad.mit.edu	36	10	125761905	125761905	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015892	exon7	c.C1429T	p.R477C	.	.	.
CHST15	51363	broad.mit.edu	36	10	125794170	125794170	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015892	exon3	c.G802T	p.D268Y	.	.	.
CHST15	51363	broad.mit.edu	36	10	125795386	125795386	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015892	exon2	c.C333T	p.F111F	.	.	.
C10orf137	26098	broad.mit.edu	36	10	127421776	127421776	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015608	exon17	c.G2429T	p.R810I	.	.	.
BCCIP	56647	broad.mit.edu	36	10	127502207	127502207	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016567	exon1	c.G91T	p.E31X	.	.	.
DHX32	55760	broad.mit.edu	36	10	127517727	127517727	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018180	exon9	c.C1714T	p.R572C	.	.	.
ADAM12	8038	broad.mit.edu	36	10	128009045	128009045	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021641	exon2	c.A112C	p.R38R	.	.	.
MKI67	4288	broad.mit.edu	36	10	129794790	129794790	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145966	exon12	c.T4224G	p.F1408L	.	.	.
MKI67	4288	broad.mit.edu	36	10	129795974	129795974	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145966	exon12	c.G3040A	p.E1014K	.	.	.
MCM10	55388	broad.mit.edu	36	10	13270981	13270981	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018518	exon10	c.G1310A	p.R437Q	.	.	.
PWWP2B	170394	broad.mit.edu	36	10	134069619	134069619	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138499	exon2	c.C1625A	p.S542X	.	.	.
ADAM8	101	broad.mit.edu	36	10	134932257	134932257	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109	exon19	c.G2048A	p.S683N	.	.	.
BEND7	222389	broad.mit.edu	36	10	13521292	13521292	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152751	exon9	c.A1293G	p.S431S	.	.	.
SYCE1	93426	broad.mit.edu	36	10	135222373	135222373	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143764	exon4	c.C269T	p.S90L	.	.	.
PRPF18	8559	broad.mit.edu	36	10	13682291	13682291	+	Silent	SNP	G	A	A	rs11540073	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003675	exon3	c.G186A	p.S62S	.	.	.
CDNF	441549	broad.mit.edu	36	10	14907610	14907610	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029954	exon3	c.G259A	p.A87T	.	.	.
SUV39H2	79723	broad.mit.edu	36	10	14979491	14979491	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193424	exon3	c.G818T	p.R273I	.	.	.
PTER	9317	broad.mit.edu	36	10	16566630	16566630	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001484	exon3	c.A241C	p.K81Q	.	.	.
CUBN	8029	broad.mit.edu	36	10	17186550	17186550	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081	exon12	c.G1291T	p.E431X	.	.	.
NEBL	10529	broad.mit.edu	36	10	21138796	21138796	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006393	exon25	c.C2556T	p.F852F	.	.	.
C10orf140	387640	broad.mit.edu	36	10	21844440	21844440	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207371	exon4	c.T2318G	p.F773C	.	.	.
MLLT10	8028	broad.mit.edu	36	10	22002535	22002535	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195626	exon10	c.A1302C	p.E434D	.	.	.
SPAG6	9576	broad.mit.edu	36	10	22697602	22697602	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012443	exon4	c.G461T	p.R154I	.	.	.
PIP4K2A	5305	broad.mit.edu	36	10	22902351	22902351	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005028	exon5	c.C534A	p.F178L	.	.	.
ARHGAP21	57584	broad.mit.edu	36	10	24949412	24949412	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020824	exon9	c.C1418T	p.P473L	.	.	.
ARHGAP21	57584	broad.mit.edu	36	10	24949918	24949918	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020824	exon9	c.C912T	p.G304G	.	.	.
GPR158	57512	broad.mit.edu	36	10	25741235	25741235	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020752	exon4	c.G1162T	p.E388X	.	.	.
GPR158	57512	broad.mit.edu	36	10	25927389	25927389	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020752	exon11	c.G2828T	p.R943I	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26486401	26486401	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017433	exon26	c.C2950T	p.R984X	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26497690	26497690	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017433	exon28	c.G3155A	p.R1052Q	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26505725	26505725	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017433	exon31	c.T4383C	p.G1461G	.	.	.
ABI1	10006	broad.mit.edu	36	10	27080619	27080619	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178124	exon7	c.A905C	p.E302A	.	.	.
ANKRD26	22852	broad.mit.edu	36	10	27343450	27343450	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014915	exon31	c.C4703A	p.S1568Y	.	.	.
ANKRD26	22852	broad.mit.edu	36	10	27363873	27363873	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014915	exon24	c.T3512G	p.F1171C	.	.	.
ACBD5	91452	broad.mit.edu	36	10	27539929	27539929	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145698	exon9	c.C1024T	p.R342C	.	.	.
PTCHD3	374308	broad.mit.edu	36	10	27742562	27742562	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001034842	exon1	c.C624T	p.F208F	.	.	.
ARMC4	55130	broad.mit.edu	36	10	28236651	28236651	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018076	exon17	c.G2557T	p.D853Y	.	.	.
WAC	51322	broad.mit.edu	36	10	28939735	28939735	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_100486	exon8	c.G958A	p.A320T	.	.	.
KIAA1462	57608	broad.mit.edu	36	10	30355464	30355464	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020848	exon3	c.G3619T	p.E1207X	.	.	.
KIAA1462	57608	broad.mit.edu	36	10	30357192	30357192	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020848	exon3	c.G1891A	p.D631N	.	.	.
MTPAP	55149	broad.mit.edu	36	10	30642656	30642656	+	Missense_Mutation	SNP	C	T	T	rs17855116	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018109	exon9	c.G1637A	p.S546N	.	.	.
MTPAP	55149	broad.mit.edu	36	10	30642785	30642785	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018109	exon9	c.G1508A	p.R503Q	.	.	.
ZNF438	220929	broad.mit.edu	36	10	31178261	31178261	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143771	exon7	c.C1049T	p.A350V	.	.	.
ZEB1	6935	broad.mit.edu	36	10	31849704	31849704	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174093	exon6	c.C1375A	p.L459I	.	.	.
PITRM1	10531	broad.mit.edu	36	10	3202319	3202319	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014889	exon2	c.A136C	p.I46L	.	.	.
KIF5B	3799	broad.mit.edu	36	10	32362814	32362814	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004521	exon12	c.G1270T	p.E424X	.	.	.
C10orf68	79741	broad.mit.edu	36	10	33134007	33134007	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024688	exon11	c.C885A	p.F295L	.	.	.
ANKRD30A	91074	broad.mit.edu	36	10	37462947	37462947	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052997	exon5	c.G547T	p.V183L	.	.	.
ZNF248	57209	broad.mit.edu	36	10	38160586	38160586	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021045	exon6	c.G1703T	p.R568I	.	.	.
ZNF25	219749	broad.mit.edu	36	10	38281967	38281967	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145011	exon6	c.C465A	p.F155L	.	.	.
BMS1	9790	broad.mit.edu	36	10	42612265	42612265	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014753	exon10	c.G1567T	p.E523X	.	.	.
BMS1	9790	broad.mit.edu	36	10	42612371	42612371	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014753	exon10	c.G1673T	p.S558I	.	.	.
OR13A1	79290	broad.mit.edu	36	10	45119116	45119116	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004297	exon4	c.A761G	p.K254R	.	.	.
ALOX5	240	broad.mit.edu	36	10	45239539	45239539	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000698	exon5	c.C599A	p.S200Y	.	.	.
FAM21C	253725	broad.mit.edu	36	10	45558937	45558937	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001169106	exon6	c.G622A	p.E208K	.	.	.
ARHGAP22	58504	broad.mit.edu	36	10	49324599	49324599	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021226	exon10	c.G1938T	p.K646N	.	.	.
LRRC18	474354	broad.mit.edu	36	10	49791572	49791572	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006939	exon1	c.G635T	p.R212I	.	.	.
DRGX	644168	broad.mit.edu	36	10	50268274	50268274	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080520	exon3	c.G160A	p.E54K	.	.	.
ERCC6	2074	broad.mit.edu	36	10	50349132	50349132	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000124	exon17	c.G2965T	p.D989Y	.	.	.
PGBD3	267004	broad.mit.edu	36	10	50395159	50395159	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170753	exon2	c.G8A	p.R3Q	.	.	.
A1CF	29974	broad.mit.edu	36	10	52236520	52236520	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198818	exon14	c.G1736A	p.R579Q	.	.	.
DIP2C	22982	broad.mit.edu	36	10	522462	522462	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014974	exon2	c.A94G	p.T32A	.	.	.
A1CF	29974	broad.mit.edu	36	10	52250389	52250389	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198818	exon9	c.C796T	p.R266X	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55252824	55252824	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142767	exon31	c.A4548G	p.I1516M	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55452818	55452818	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142767	exon18	c.T2255G	p.V752G	.	.	.
ZWINT	11130	broad.mit.edu	36	10	57788639	57788639	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007057	exon6	c.G556T	p.D186Y	.	.	.
IPMK	253430	broad.mit.edu	36	10	59646073	59646073	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152230	exon4	c.A385C	p.K129Q	.	.	.
PHYHIPL	84457	broad.mit.edu	36	10	60675140	60675140	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143774	exon5	c.C836A	p.S279Y	.	.	.
FAM13C	220965	broad.mit.edu	36	10	60713175	60713175	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143773	exon7	c.G297A	p.A99A	.	.	.
ANK3	288	broad.mit.edu	36	10	61503743	61503743	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020987	exon37	c.C6902A	p.S2301Y	.	.	.
ANK3	288	broad.mit.edu	36	10	61629961	61629961	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020987	exon13	c.C1423T	p.R475C	.	.	.
RHOBTB1	9886	broad.mit.edu	36	10	62304797	62304797	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014836	exon9	c.C1736T	p.A579V	.	.	.
JMJD1C	221037	broad.mit.edu	36	10	64636735	64636735	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004241	exon7	c.A4043C	p.K1348T	.	.	.
PRKCQ	5588	broad.mit.edu	36	10	6512840	6512840	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006257	exon17	c.C1903T	p.R635W	.	.	.
CTNNA3	29119	broad.mit.edu	36	10	67710352	67710352	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013266	exon13	c.C1766G	p.A589G	.	.	.
TET1	80312	broad.mit.edu	36	10	70003350	70003350	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030625	exon2	c.G1249T	p.E417X	.	.	.
STOX1	219736	broad.mit.edu	36	10	70316067	70316067	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152709	exon3	c.G2509T	p.E837X	.	.	.
HKDC1	80201	broad.mit.edu	36	10	70690907	70690907	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025130	exon16	c.G2223T	p.E741D	.	.	.
TACR2	6865	broad.mit.edu	36	10	70837034	70837034	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001057	exon4	c.G750T	p.K250N	.	.	.
COL13A1	1305	broad.mit.edu	36	10	71301959	71301959	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080802	exon4	c.G386T	p.R129I	.	.	.
PPA1	5464	broad.mit.edu	36	10	71643279	71643279	+	Missense_Mutation	SNP	C	T	T	rs11538284	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021129	exon6	c.G457A	p.D153N	.	.	.
ADAMTS14	140766	broad.mit.edu	36	10	72159945	72159945	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080722	exon6	c.G1036A	p.D346N	.	.	.
SGPL1	8879	broad.mit.edu	36	10	72303287	72303287	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003901	exon12	c.C1233T	p.F411F	.	.	.
SFMBT2	57713	broad.mit.edu	36	10	7257961	7257961	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029880	exon17	c.T1981C	p.Y661H	.	.	.
CDH23	64072	broad.mit.edu	36	10	73208027	73208027	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022124	exon38	c.G5143T	p.D1715Y	.	.	.
CCDC109A	90550	broad.mit.edu	36	10	74314096	74314096	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138357	exon7	c.T928C	p.S310P	.	.	.
MYOZ1	58529	broad.mit.edu	36	10	75061785	75061785	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021245	exon6	c.G809A	p.R270Q	.	.	.
NDST2	8509	broad.mit.edu	36	10	75237384	75237384	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003635	exon3	c.C769A	p.L257I	.	.	.
ITIH2	3698	broad.mit.edu	36	10	7826837	7826837	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002216	exon19	c.A2486G	p.H829R	.	.	.
TAF3	83860	broad.mit.edu	36	10	7906484	7906484	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031923	exon2	c.G364T	p.E122X	.	.	.
DLG5	9231	broad.mit.edu	36	10	79235556	79235556	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004747	exon27	c.G5037A	p.T1679T	.	.	.
ZMIZ1	57178	broad.mit.edu	36	10	80727408	80727408	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020338	exon14	c.C1446A	p.F482L	.	.	.
NRG3	10718	broad.mit.edu	36	10	84735212	84735212	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165973	exon11	c.C1371T	p.S457S	.	.	.
CDHR1	92211	broad.mit.edu	36	10	85961979	85961979	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171971	exon15	c.G1618A	p.A540T	.	.	.
LARP4B	23185	broad.mit.edu	36	10	861033	861033	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015155	exon12	c.G1456A	p.E486K	.	.	.
FAM190B	54462	broad.mit.edu	36	10	86121884	86121884	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018999	exon2	c.G1096T	p.E366X	.	.	.
MMRN2	79812	broad.mit.edu	36	10	88693105	88693105	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024756	exon6	c.C1416T	p.N472N	.	.	.
GLUD1	2746	broad.mit.edu	36	10	88817849	88817849	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005271	exon5	c.G692A	p.R231Q	.	.	.
FAM22A	728118	broad.mit.edu	36	10	88982623	88982623	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099338	exon5	c.C1635T	p.G545G	.	.	.
PTEN	5728	broad.mit.edu	36	10	89682885	89682885	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000314	exon5	c.G389A	p.R130Q	 PTEN,central_nervous_system,brain,Substitution - Nonsense,+1 	.	.
PTEN	5728	broad.mit.edu	36	10	89710724	89710724	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000314	exon8	c.G895T	p.E299X	 PTEN,endometrium,NS,Substitution - Nonsense,0 	.	.
IFIT2	3433	broad.mit.edu	36	10	91055832	91055832	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001547	exon2	c.C139T	p.R47C	.	.	.
IFIT1B	439996	broad.mit.edu	36	10	91133448	91133448	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010987	exon2	c.G398A	p.R133H	.	.	.
IFIT1	3434	broad.mit.edu	36	10	91152776	91152776	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001548	exon2	c.G764A	p.R255Q	.	.	.
IFIT5	24138	broad.mit.edu	36	10	91167744	91167744	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012420	exon2	c.G808A	p.E270K	.	.	.
KIF20B	9585	broad.mit.edu	36	10	91488326	91488326	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016195	exon20	c.G3628T	p.E1210X	.	.	.
HTR7	3363	broad.mit.edu	36	10	92498684	92498684	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019859	exon2	c.G1187A	p.R396H	.	.	.
HTR7	3363	broad.mit.edu	36	10	92606931	92606931	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019859	exon1	c.G478A	p.A160T	.	.	.
HTR7	3363	broad.mit.edu	36	10	92606988	92606988	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019859	exon1	c.A421G	p.T141A	.	.	.
HTR7	3363	broad.mit.edu	36	10	92607172	92607172	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019859	exon1	c.C237T	p.V79V	.	.	.
ANKRD1	27063	broad.mit.edu	36	10	92665333	92665333	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014391	exon8	c.A796G	p.K266E	.	.	.
TNKS2	80351	broad.mit.edu	36	10	93607184	93607184	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025235	exon24	c.A3011C	p.K1004T	.	.	.
BTAF1	9044	broad.mit.edu	36	10	93734032	93734032	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003972	exon19	c.G2318A	p.R773Q	.	.	.
EXOC6	54536	broad.mit.edu	36	10	94685578	94685578	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013848	exon12	c.C1153T	p.L385L	.	.	.
MYOF	26509	broad.mit.edu	36	10	95131010	95131010	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133337	exon19	c.A1793C	p.K598T	.	.	.
PLCE1	51196	broad.mit.edu	36	10	95781055	95781055	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016341	exon2	c.G262T	p.E88X	.	.	.
PLCE1	51196	broad.mit.edu	36	10	95921004	95921004	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165979	exon3	c.G646A	p.D216N	.	.	.
NOC3L	64318	broad.mit.edu	36	10	96096225	96096225	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022451	exon11	c.A1336C	p.K446Q	.	.	.
HELLS	3070	broad.mit.edu	36	10	96351331	96351331	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018063	exon22	c.G2479T	p.E827X	.	.	.
CYP2C19	1557	broad.mit.edu	36	10	96602513	96602513	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000769	exon9	c.G1325A	p.R442H	.	.	.
SORBS1	10580	broad.mit.edu	36	10	97125747	97125747	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001034954	exon17	c.C1710A	p.F570L	.	.	.
ENTPD1	953	broad.mit.edu	36	10	97595139	97595139	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001776	exon6	c.C609T	p.T203T	.	.	.
TM9SF3	56889	broad.mit.edu	36	10	98311801	98311801	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020123	exon4	c.G506A	p.R169Q	.	.	.
C10orf12	26148	broad.mit.edu	36	10	98731229	98731229	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015652	exon1	c.G92T	p.R31I	.	.	.
C10orf12	26148	broad.mit.edu	36	10	98731961	98731961	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015652	exon1	c.G824A	p.R275Q	.	.	.
C10orf12	26148	broad.mit.edu	36	10	98734209	98734209	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015652	exon1	c.C3072T	p.C1024C	.	.	.
PGAM1	5223	broad.mit.edu	36	10	99180243	99180243	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002629	exon2	c.G257A	p.R86H	.	.	.
C10orf28	27291	broad.mit.edu	36	10	99981397	99981397	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014472	exon5	c.C1924T	p.H642Y	.	.	.
ADM	133	broad.mit.edu	36	11	10284729	10284730	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001124	exon4	c.523_524insC	p.A175fs	.	.	.
TMEM133	83935	broad.mit.edu	36	11	100368493	100368493	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032021	exon1	c.C244T	p.R82C	.	.	.
ANGPTL5	253935	broad.mit.edu	36	11	101267455	101267455	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178127	exon9	c.G932A	p.R311H	.	.	.
KIAA1377	57562	broad.mit.edu	36	11	101338845	101338845	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020802	exon6	c.T1869C	p.I623I	.	.	.
MMP12	4321	broad.mit.edu	36	11	102247798	102247798	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002426	exon3	c.T445G	p.F149V	.	.	.
MMP12	4321	broad.mit.edu	36	11	102249036	102249036	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002426	exon2	c.T119G	p.F40C	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102485568	102485568	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001377	exon1	c.A55C	p.N19H	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102504852	102504852	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001377	exon13	c.G1861A	p.A621T	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102575221	102575221	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001377	exon49	c.G7894A	p.E2632K	.	.	.
DDI1	414301	broad.mit.edu	36	11	103413901	103413901	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001711	exon1	c.G1141T	p.D381Y	.	.	.
CASP5	838	broad.mit.edu	36	11	104376290	104376290	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136112	exon6	c.T899G	p.L300R	.	.	.
CASP1	834	broad.mit.edu	36	11	104405660	104405660	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033292	exon6	c.G804T	p.K268N	.	.	.
AMPD3	272	broad.mit.edu	36	11	10463069	10463069	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025389	exon5	c.A716G	p.E239G	.	.	.
GUCY1A2	2977	broad.mit.edu	36	11	106063490	106063490	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000855	exon8	c.C2194A	p.L732I	.	.	.
GUCY1A2	2977	broad.mit.edu	36	11	106185932	106185932	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000855	exon5	c.T1689C	p.Y563Y	.	.	.
GUCY1A2	2977	broad.mit.edu	36	11	106186136	106186136	+	Nonsense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000855	exon5	c.T1485G	p.Y495X	.	.	.
GUCY1A2	2977	broad.mit.edu	36	11	106316042	106316042	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000855	exon4	c.G560T	p.R187I	.	.	.
CWF19L2	143884	broad.mit.edu	36	11	106804938	106804938	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152434	exon8	c.G1230T	p.K410N	.	.	.
ATM	472	broad.mit.edu	36	11	107635010	107635010	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000051	exon16	c.T2464G	p.L822V	.	.	.
ATM	472	broad.mit.edu	36	11	107710921	107710921	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000051	exon55	c.G8026T	p.E2676X	.	.	.
ZC3H12C	85463	broad.mit.edu	36	11	109528867	109528867	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033390	exon3	c.G787T	p.E263X	.	.	.
TTC12	54970	broad.mit.edu	36	11	112710945	112710945	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017868	exon8	c.C552T	p.N184N	.	.	.
DRD2	1813	broad.mit.edu	36	11	112788645	112788645	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000795	exon7	c.G981T	p.K327N	.	.	.
TMPRSS5	80975	broad.mit.edu	36	11	113065768	113065768	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030770	exon12	c.G1288A	p.A430T	.	.	.
ZBTB16	7704	broad.mit.edu	36	11	113440332	113440332	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006006	exon2	c.A1100C	p.D367A	.	.	.
GALNTL4	374378	broad.mit.edu	36	11	11357236	11357236	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198516	exon4	c.C747A	p.L249L	.	.	.
FAM55D	54827	broad.mit.edu	36	11	113957686	113957686	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017678	exon4	c.T11G	p.F4C	.	.	.
FAM55D	54827	broad.mit.edu	36	11	113958825	113958825	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077639	exon3	c.C225A	p.I75I	.	.	.
DSCAML1	57453	broad.mit.edu	36	11	116813945	116813945	+	Silent	SNP	G	A	A	rs2305824	byCluster;byFrequency;byHapMap	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020693	exon25	c.C4488T	p.S1496S	.	.	.
DSCAML1	57453	broad.mit.edu	36	11	116892404	116892404	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020693	exon8	c.G1951A	p.V651I	.	.	.
FXYD6	53826	broad.mit.edu	36	11	117215733	117215733	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164837	exon8	c.G282T	p.E94D	.	.	.
MLL	4297	broad.mit.edu	36	11	117878876	117878876	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005933	exon27	c.C7050A	p.S2350S	.	.	.
ARCN1	372	broad.mit.edu	36	11	117969580	117969580	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142281	exon7	c.G934T	p.D312Y	.	.	.
PHLDB1	23187	broad.mit.edu	36	11	117991994	117991994	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144758	exon4	c.A213G	p.R71R	.	.	.
TRAPPC4	51399	broad.mit.edu	36	11	118397753	118397753	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016146	exon4	c.T528G	p.I176M	.	.	.
HMBS	3145	broad.mit.edu	36	11	118468409	118468409	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000190	exon11	c.G737A	p.R246H	.	.	.
ABCG4	64137	broad.mit.edu	36	11	118532324	118532324	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142505	exon7	c.C762A	p.I254I	.	.	.
USP47	55031	broad.mit.edu	36	11	11920533	11920533	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017944	exon19	c.C2185T	p.R729W	.	.	.
ARHGEF12	23365	broad.mit.edu	36	11	119824213	119824213	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198665	exon19	c.G1626A	p.E542E	.	.	.
GRIK4	2900	broad.mit.edu	36	11	120281302	120281302	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014619	exon11	c.G1366A	p.A456T	.	.	.
GRIK4	2900	broad.mit.edu	36	11	120338440	120338440	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014619	exon16	c.C2106T	p.F702F	.	.	.
TECTA	7007	broad.mit.edu	36	11	120501454	120501454	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005422	exon7	c.G1437A	p.P479P	.	.	.
SC5DL	6309	broad.mit.edu	36	11	120679468	120679468	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006918	exon2	c.C174T	p.F58F	.	.	.
SORL1	6653	broad.mit.edu	36	11	120872804	120872804	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003105	exon6	c.G775A	p.D259N	.	.	.
SORL1	6653	broad.mit.edu	36	11	120872943	120872943	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003105	exon6	c.A914C	p.K305T	.	.	.
UBASH3B	84959	broad.mit.edu	36	11	122174919	122174919	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032873	exon10	c.C1417T	p.R473C	.	.	.
C11orf63	79864	broad.mit.edu	36	11	122333283	122333283	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024806	exon8	c.G2013A	p.T671T	.	.	.
ASAM	79827	broad.mit.edu	36	11	122459626	122459626	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024769	exon4	c.T528C	p.D176D	.	.	.
MICALCL	84953	broad.mit.edu	36	11	12272336	12272336	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032867	exon3	c.G782A	p.R261Q	.	.	.
OR6T1	219874	broad.mit.edu	36	11	123319106	123319106	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005187	exon1	c.C650A	p.S217Y	.	.	.
OR8G2	26492	broad.mit.edu	36	11	123601512	123601512	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007249	exon1	c.C905A	p.S302Y	.	.	.
OR8B3	390271	broad.mit.edu	36	11	123771787	123771787	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005467	exon1	c.G671T	p.S224I	.	.	.
OR8B8	26493	broad.mit.edu	36	11	123815277	123815277	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012378	exon1	c.G915A	p.L305L	.	.	.
PUS3	83480	broad.mit.edu	36	11	125271088	125271088	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031307	exon2	c.G302A	p.R101Q	.	.	.
KIRREL3	84623	broad.mit.edu	36	11	125848452	125848452	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032531	exon5	c.C553T	p.R185X	.	.	.
KCNJ5	3762	broad.mit.edu	36	11	128286817	128286817	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000890	exon2	c.G439A	p.E147K	.	.	.
BARX2	8538	broad.mit.edu	36	11	128826384	128826384	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003658	exon4	c.G717A	p.G239G	.	.	.
OPCML	4978	broad.mit.edu	36	11	132032264	132032264	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012393	exon3	c.G307A	p.E103K	.	.	.
BTBD10	84280	broad.mit.edu	36	11	13423186	13423186	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032320	exon2	c.A62C	p.K21T	.	.	.
COPB1	1315	broad.mit.edu	36	11	14453983	14453983	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016451	exon13	c.T1540G	p.L514V	.	.	.
PDE3B	5140	broad.mit.edu	36	11	14796388	14796388	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000922	exon6	c.G1606T	p.E536X	.	.	.
PIK3C2A	5286	broad.mit.edu	36	11	17147150	17147150	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002645	exon1	c.A715C	p.N239H	.	.	.
ABCC8	6833	broad.mit.edu	36	11	17376466	17376466	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000352	exon30	c.G3749A	p.R1250Q	.	.	.
ABCC8	6833	broad.mit.edu	36	11	17376533	17376533	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000352	exon30	c.G3682A	p.E1228K	.	.	.
ABCC8	6833	broad.mit.edu	36	11	17390792	17390792	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000352	exon21	c.C2553A	p.F851L	.	.	.
HPS5	11234	broad.mit.edu	36	11	18269952	18269952	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181508	exon15	c.G1711T	p.D571Y	.	.	.
GTF2H1	2965	broad.mit.edu	36	11	18330480	18330480	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142307	exon12	c.T1171G	p.S391A	.	.	.
NAV2	89797	broad.mit.edu	36	11	20092836	20092836	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111018	exon37	c.C6891T	p.V2297V	.	.	.
PRMT3	10196	broad.mit.edu	36	11	20430282	20430282	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005788	exon11	c.G1024T	p.D342Y	.	.	.
NELL1	4745	broad.mit.edu	36	11	20761873	20761873	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006157	exon3	c.G256T	p.E86X	.	.	.
LUZP2	338645	broad.mit.edu	36	11	24710278	24710278	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009909	exon3	c.T219G	p.V73V	.	.	.
CCDC34	91057	broad.mit.edu	36	11	27328520	27328520	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030771	exon3	c.C541T	p.R181C	.	.	.
LGR4	55366	broad.mit.edu	36	11	27369242	27369242	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018490	exon4	c.C376T	p.R126X	.	.	.
KIF18A	81930	broad.mit.edu	36	11	28037185	28037185	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031217	exon13	c.C1812T	p.I604I	.	.	.
DNAJC24	120526	broad.mit.edu	36	11	31393003	31393003	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181706	exon3	c.G181A	p.E61K	.	.	.
RCN1	5954	broad.mit.edu	36	11	32075359	32075359	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002901	exon2	c.C348A	p.I116I	.	.	.
CCDC73	493860	broad.mit.edu	36	11	32591995	32591995	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008391	exon16	c.G2445A	p.E815E	.	.	.
DEPDC7	91614	broad.mit.edu	36	11	33011532	33011532	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139160	exon9	c.C1464A	p.F488L	.	.	.
HIPK3	10114	broad.mit.edu	36	11	33264649	33264649	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001048200	exon2	c.G113T	p.R38I	.	.	.
HIPK3	10114	broad.mit.edu	36	11	33265128	33265128	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001048200	exon2	c.G592A	p.E198K	.	.	.
C11orf41	25758	broad.mit.edu	36	11	33522351	33522351	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012194	exon1	c.A1775C	p.N592T	.	.	.
FBXO3	26273	broad.mit.edu	36	11	33747019	33747019	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033406	exon3	c.G312T	p.K104N	.	.	.
CAPRIN1	4076	broad.mit.edu	36	11	34067573	34067573	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203364	exon12	c.G1287A	p.A429A	.	.	.
ABTB2	25841	broad.mit.edu	36	11	34138390	34138390	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145804	exon12	c.G2484T	p.K828N	.	.	.
RAG1	5896	broad.mit.edu	36	11	36553156	36553156	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000448	exon2	c.G1726T	p.D576Y	.	.	.
RAG2	5897	broad.mit.edu	36	11	36571963	36571963	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000536	exon2	c.C332A	p.S111Y	.	.	.
STIM1	6786	broad.mit.edu	36	11	3834154	3834154	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003156	exon1	c.T78C	p.S26S	.	.	.
LRRC4C	57689	broad.mit.edu	36	11	40093768	40093768	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020929	exon2	c.G651A	p.P217P	.	.	.
LRRC4C	57689	broad.mit.edu	36	11	40093999	40093999	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020929	exon2	c.G420A	p.P140P	.	.	.
TTC17	55761	broad.mit.edu	36	11	43385509	43385509	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018259	exon15	c.G1870T	p.E624X	.	.	.
MAPK8IP1	9479	broad.mit.edu	36	11	45881226	45881226	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005456	exon5	c.C1332T	p.S444S	.	.	.
LRP4	4038	broad.mit.edu	36	11	46851713	46851713	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002334	exon29	c.G4237T	p.D1413Y	.	.	.
RAPSN	5913	broad.mit.edu	36	11	47426180	47426180	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005055	exon2	c.C291T	p.C97C	.	.	.
OR51F1	256892	broad.mit.edu	36	11	4746968	4746968	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004752	exon1	c.C756A	p.F252L	.	.	.
NUP160	23279	broad.mit.edu	36	11	47776585	47776585	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015231	exon24	c.C2902T	p.R968X	.	.	.
PTPRJ	5795	broad.mit.edu	36	11	48099373	48099373	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098503	exon4	c.A595G	p.R199G	.	.	.
OR4S1	256148	broad.mit.edu	36	11	48284662	48284662	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004725	exon1	c.C312A	p.F104L	.	.	.
OR51A7	119687	broad.mit.edu	36	11	4885635	4885635	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004749	exon1	c.C460A	p.L154I	.	.	.
FOLH1	2346	broad.mit.edu	36	11	49184249	49184249	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193471	exon3	c.A125C	p.N42T	.	.	.
OR51V1	283111	broad.mit.edu	36	11	5177889	5177889	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004760	exon1	c.C618T	p.Y206Y	.	.	.
OR51M1	390059	broad.mit.edu	36	11	5367246	5367246	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004756	exon1	c.A42G	p.L14L	.	.	.
OR51M1	390059	broad.mit.edu	36	11	5367683	5367683	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004756	exon1	c.T479C	p.V160A	.	.	.
OR51I1	390063	broad.mit.edu	36	11	5419033	5419033	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005288	exon1	c.T288C	p.F96F	.	.	.
OR52D1	390066	broad.mit.edu	36	11	5467434	5467434	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005163	exon1	c.C922A	p.L308I	.	.	.
UBQLN3	50613	broad.mit.edu	36	11	5485687	5485687	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017481	exon2	c.G1678A	p.E560K	.	.	.
UBQLN3	50613	broad.mit.edu	36	11	5487190	5487190	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017481	exon2	c.G175A	p.D59N	.	.	.
UBQLNL	143630	broad.mit.edu	36	11	5493659	5493659	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145053	exon1	c.G589T	p.E197X	.	.	.
OR4C6	219432	broad.mit.edu	36	11	55190014	55190014	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004704	exon1	c.G796T	p.D266Y	.	.	.
OR5D18	219438	broad.mit.edu	36	11	55344215	55344215	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001952	exon1	c.C534A	p.F178L	.	.	.
OR5I1	10798	broad.mit.edu	36	11	55460388	55460388	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006637	exon1	c.G65A	p.R22H	.	.	.
OR5F1	338674	broad.mit.edu	36	11	55517871	55517871	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003697	exon1	c.T807C	p.N269N	.	.	.
OR5J2	282775	broad.mit.edu	36	11	55701493	55701493	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005492	exon1	c.C824A	p.S275Y	.	.	.
OR8H1	219469	broad.mit.edu	36	11	55814192	55814192	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005199	exon1	c.A923C	p.Q308P	.	.	.
OR8K1	390157	broad.mit.edu	36	11	55870522	55870522	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002907	exon1	c.G432T	p.E144D	.	.	.
OR8J1	219477	broad.mit.edu	36	11	55884475	55884475	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005205	exon1	c.G177T	p.M59I	.	.	.
TRIM6	117854	broad.mit.edu	36	11	5588621	5588621	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003818	exon8	c.C1024A	p.L342I	.	.	.
OR5M3	219482	broad.mit.edu	36	11	55993808	55993808	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004742	exon1	c.A742C	p.I248L	.	.	.
TRIM6-TRIM34	445372	broad.mit.edu	36	11	5621386	5621386	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003827	exon8	c.T1338G	p.F446L	.	.	.
PRG2	5553	broad.mit.edu	36	11	56945084	56945084	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199329	exon7	c.G468A	p.S156S	.	.	.
OR5B17	219965	broad.mit.edu	36	11	57882244	57882244	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005489	exon1	c.A875G	p.N292S	.	.	.
OR5B17	219965	broad.mit.edu	36	11	57882631	57882631	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005489	exon1	c.G488A	p.R163H	.	.	.
OR5B2	390190	broad.mit.edu	36	11	57946797	57946797	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005566	exon1	c.G514A	p.V172I	.	.	.
OR52N2	390077	broad.mit.edu	36	11	5798801	5798801	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005174	exon1	c.C660T	p.Y220Y	.	.	.
OR52E8	390079	broad.mit.edu	36	11	5834809	5834809	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005168	exon1	c.C700T	p.P234S	.	.	.
FAM111B	374393	broad.mit.edu	36	11	58648893	58648893	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142703	exon3	c.T657G	p.I219M	.	.	.
OR56A3	390083	broad.mit.edu	36	11	5926028	5926028	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003443	exon1	c.C876T	p.N292N	.	.	.
GIF	2694	broad.mit.edu	36	11	59366589	59366589	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005142	exon4	c.G414A	p.A138A	.	.	.
MS4A15	219995	broad.mit.edu	36	11	60287990	60287990	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098835	exon2	c.G208T	p.E70X	.	.	.
TMEM132A	54972	broad.mit.edu	36	11	60457671	60457671	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017870	exon8	c.C1441T	p.R481C	.	.	.
DAK	26007	broad.mit.edu	36	11	60869912	60869912	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015533	exon17	c.C1493A	p.S498Y	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62043036	62043036	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001620	exon5	c.C15429A	p.V5143V	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62052900	62052900	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001620	exon5	c.C5565A	p.I1855I	.	.	.
EEF1G	1937	broad.mit.edu	36	11	62095920	62095920	+	De_novo_Start_OutOfFrame	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001404	exon3	c.C201A	p.F67L	.	.	.
MTA2	9219	broad.mit.edu	36	11	62119035	62119035	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004739	exon15	c.G1567T	p.D523Y	.	.	.
MTA2	9219	broad.mit.edu	36	11	62124282	62124282	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004739	exon3	c.A122C	p.K41T	.	.	.
ZBTB3	79842	broad.mit.edu	36	11	62276170	62276170	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024784	exon2	c.G1693T	p.D565Y	.	.	.
SLC22A6	9356	broad.mit.edu	36	11	62503915	62503915	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004790	exon7	c.C1119A	p.I373I	.	.	.
SLC22A8	9376	broad.mit.edu	36	11	62538862	62538862	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184732	exon2	c.T145C	p.C49R	.	.	.
SLC22A9	114571	broad.mit.edu	36	11	62906209	62906209	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080866	exon6	c.T957G	p.I319M	.	.	.
PRKCDBP	112464	broad.mit.edu	36	11	6297346	6297346	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145040	exon2	c.G409A	p.A137T	.	.	.
HRASLS2	54979	broad.mit.edu	36	11	63084201	63084201	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017878	exon2	c.C50A	p.S17Y	.	.	.
RASGRP2	10235	broad.mit.edu	36	11	64265029	64265029	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098670	exon5	c.G338A	p.R113Q	.	.	.
SF1	7536	broad.mit.edu	36	11	64292288	64292288	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201998	exon9	c.G934T	p.E312X	.	.	.
BATF2	116071	broad.mit.edu	36	11	64513359	64513359	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138456	exon3	c.A643G	p.T215A	.	.	.
SIPA1	6494	broad.mit.edu	36	11	65170356	65170356	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006747	exon7	c.G1352A	p.R451H	.	.	.
SYT12	91683	broad.mit.edu	36	11	66569843	66569843	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177880	exon7	c.G1011T	p.K337N	.	.	.
TCIRG1	10312	broad.mit.edu	36	11	67572009	67572009	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006019	exon13	c.C1548T	p.I516I	.	.	.
MRGPRD	116512	broad.mit.edu	36	11	68504416	68504416	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198923	exon1	c.C616T	p.R206W	.	.	.
PPFIA1	8500	broad.mit.edu	36	11	69867590	69867590	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003626	exon15	c.G1875A	p.A625A	.	.	.
PPFIA1	8500	broad.mit.edu	36	11	69898705	69898705	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003626	exon24	c.G3173A	p.R1058H	.	.	.
PDE2A	5138	broad.mit.edu	36	11	71979264	71979264	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002599	exon8	c.C558T	p.V186V	.	.	.
ARAP1	116985	broad.mit.edu	36	11	72091615	72091615	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040118	exon15	c.G2150A	p.R717Q	.	.	.
C2CD3	26005	broad.mit.edu	36	11	73463006	73463006	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015531	exon24	c.T4891C	p.L1631L	.	.	.
DGAT2	84649	broad.mit.edu	36	11	75185029	75185029	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032564	exon5	c.G438T	p.K146N	.	.	.
C11orf30	56946	broad.mit.edu	36	11	75938645	75938645	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020193	exon21	c.C3776T	p.A1259V	.	.	.
CAPN5	726	broad.mit.edu	36	11	76507733	76507733	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004055	exon9	c.G1177A	p.E393K	.	.	.
CLNS1A	1207	broad.mit.edu	36	11	77018509	77018509	+	Missense_Mutation	SNP	C	T	T	rs35303781	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001293	exon2	c.G209A	p.R70Q	.	.	.
RSF1	51773	broad.mit.edu	36	11	77087365	77087365	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016578	exon7	c.C2530T	p.R844X	.	.	.
ODZ4	26011	broad.mit.edu	36	11	78065055	78065055	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098816	exon30	c.C5286T	p.I1762I	.	.	.
OR10A3	26496	broad.mit.edu	36	11	7917366	7917366	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003745	exon1	c.C278A	p.S93Y	.	.	.
ANKRD42	338699	broad.mit.edu	36	11	82613615	82613615	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182603	exon6	c.G573A	p.T191T	.	.	.
CREBZF	58487	broad.mit.edu	36	11	85053226	85053226	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039618	exon1	c.G342A	p.R114R	.	.	.
CCDC83	220047	broad.mit.edu	36	11	85274897	85274897	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173556	exon5	c.G350A	p.R117H	.	.	.
ME3	10873	broad.mit.edu	36	11	85839020	85839020	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161586	exon9	c.C988A	p.H330N	.	.	.
PRSS23	11098	broad.mit.edu	36	11	86197010	86197010	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007173	exon2	c.G677A	p.R226H	.	.	.
ST5	6764	broad.mit.edu	36	11	8696013	8696013	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005418	exon8	c.G1480T	p.D494Y	.	.	.
ASCL3	56676	broad.mit.edu	36	11	8915872	8915872	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020646	exon2	c.C413T	p.A138V	.	.	.
FAT3	120114	broad.mit.edu	36	11	91726316	91726316	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008781	exon1	c.G1390T	p.D464Y	.	.	.
FAT3	120114	broad.mit.edu	36	11	91727459	91727459	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008781	exon1	c.G2533T	p.G845C	.	.	.
FAT3	120114	broad.mit.edu	36	11	92174041	92174041	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008781	exon9	c.C8214A	p.V2738V	.	.	.
SLC36A4	120103	broad.mit.edu	36	11	92540862	92540862	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152313	exon7	c.C664A	p.L222I	.	.	.
HEPHL1	341208	broad.mit.edu	36	11	93455249	93455249	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098672	exon10	c.G1734A	p.E578E	.	.	.
IPO7	10527	broad.mit.edu	36	11	9413133	9413133	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006391	exon19	c.G2151T	p.M717I	.	.	.
CEP57	9702	broad.mit.edu	36	11	95200672	95200672	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014679	exon9	c.T960G	p.A320A	.	.	.
MAML2	84441	broad.mit.edu	36	11	95351778	95351778	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032427	exon5	c.C3453A	p.I1151I	.	.	.
JRKL	8690	broad.mit.edu	36	11	95764429	95764429	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003772	exon1	c.T968C	p.I323T	.	.	.
SBF2	81846	broad.mit.edu	36	11	9820781	9820781	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030962	exon25	c.C3223T	p.R1075C	.	.	.
CNTN5	53942	broad.mit.edu	36	11	99684353	99684353	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175566	exon20	c.G2451T	p.E817D	.	.	.
MUC5B	727897	broad.mit.edu	36	11	1222851	1222853	+	In_Frame_Del	DEL	CCG	-	-	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	CCG	CCG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002458	exon31	c.8165_8167del	p.2722_2723del	.	.	.
LOC643923	643923	broad.mit.edu	36	11	106968354	106968354	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C11orf92	399948	broad.mit.edu	36	11	110672298	110672298	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ANO4	121601	broad.mit.edu	36	12	100044918	100044918	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178826	exon26	c.T2702C	p.L901P	.	.	.
UTP20	27340	broad.mit.edu	36	12	100213481	100213481	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014503	exon12	c.G1344A	p.K448K	.	.	.
UTP20	27340	broad.mit.edu	36	12	100301479	100301479	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014503	exon60	c.G7957A	p.A2653T	.	.	.
MYBPC1	4604	broad.mit.edu	36	12	100577594	100577594	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002465	exon19	c.G1781A	p.G594D	.	.	.
GNPTAB	79158	broad.mit.edu	36	12	100679564	100679564	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024312	exon14	c.C2824A	p.L942I	.	.	.
GNPTAB	79158	broad.mit.edu	36	12	100686054	100686054	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024312	exon11	c.C1300T	p.P434S	.	.	.
CLEC1A	51267	broad.mit.edu	36	12	10115210	10115210	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016511	exon6	c.G832A	p.E278K	.	.	.
CLEC7A	64581	broad.mit.edu	36	12	10162434	10162434	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022570	exon5	c.A496G	p.T166A	.	.	.
STAB2	55576	broad.mit.edu	36	12	102570516	102570516	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017564	exon12	c.A1310G	p.H437R	.	.	.
NFYB	4801	broad.mit.edu	36	12	103041176	103041176	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006166	exon5	c.T387G	p.S129R	.	.	.
EID3	493861	broad.mit.edu	36	12	103222107	103222107	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008394	exon1	c.G265A	p.D89N	.	.	.
TXNRD1	7296	broad.mit.edu	36	12	103237477	103237477	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182743	exon6	c.G523T	p.E175X	.	.	.
KLRD1	3824	broad.mit.edu	36	12	10355380	10355380	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114396	exon5	c.T214C	p.C72R	.	.	.
TCP11L2	255394	broad.mit.edu	36	12	105239559	105239559	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152772	exon5	c.C580T	p.R194X	.	.	.
BTBD11	121551	broad.mit.edu	36	12	106575419	106575419	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017523	exon15	c.C1720A	p.L574I	.	.	.
WSCD2	9671	broad.mit.edu	36	12	107124206	107124206	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014653	exon3	c.C393T	p.I131I	.	.	.
WSCD2	9671	broad.mit.edu	36	12	107142750	107142750	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014653	exon5	c.G787A	p.D263N	.	.	.
SELPLG	6404	broad.mit.edu	36	12	107541208	107541208	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003006	exon3	c.C975T	p.F325F	.	.	.
ALKBH2	121642	broad.mit.edu	36	12	108014872	108014872	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145374	exon2	c.G103T	p.E35X	.	.	.
ACACB	32	broad.mit.edu	36	12	108115912	108115912	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001093	exon15	c.C2476A	p.L826I	.	.	.
MYO1H	283446	broad.mit.edu	36	12	108328115	108328115	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101421	exon7	c.C807A	p.L269L	.	.	.
TAS2R10	50839	broad.mit.edu	36	12	10869514	10869514	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023921	exon1	c.C622T	p.Q208X	.	.	.
GIT2	9815	broad.mit.edu	36	12	108883473	108883473	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135214	exon11	c.G980A	p.R327Q	.	.	.
ANKRD13A	88455	broad.mit.edu	36	12	108934244	108934244	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033121	exon2	c.T148C	p.S50P	.	.	.
ATP2A2	488	broad.mit.edu	36	12	109250110	109250110	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170665	exon8	c.C1000T	p.R334X	.	.	.
CCDC63	160762	broad.mit.edu	36	12	109806316	109806316	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152591	exon8	c.A953G	p.N318S	.	.	.
C12orf51	283450	broad.mit.edu	36	12	111126679	111126679	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109662	exon52	c.C7747T	p.R2583X	.	.	.
PTPN11	5781	broad.mit.edu	36	12	111372574	111372574	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002834	exon3	c.G207T	p.E69D	 PTPN11,central_nervous_system,brain,Substitution - Missense,+2 	.	.
RPH3A	22895	broad.mit.edu	36	12	111769988	111769988	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014954	exon4	c.C176A	p.A59D	.	.	.
RBM19	9904	broad.mit.edu	36	12	112869614	112869614	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016196	exon11	c.A1315C	p.T439P	.	.	.
RBM19	9904	broad.mit.edu	36	12	112880224	112880224	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016196	exon6	c.G586A	p.E196K	.	.	.
TBX5	6910	broad.mit.edu	36	12	113326010	113326010	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000192	exon2	c.C77T	p.S26L	.	.	.
MED13L	23389	broad.mit.edu	36	12	114891252	114891252	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015335	exon28	c.A6101G	p.D2034G	.	.	.
WSB2	55884	broad.mit.edu	36	12	116965517	116965517	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018639	exon3	c.G231A	p.T77T	.	.	.
TAOK3	51347	broad.mit.edu	36	12	117121444	117121444	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016281	exon13	c.A989G	p.D330G	.	.	.
SRRM4	84530	broad.mit.edu	36	12	118067742	118067742	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194286	exon9	c.C945T	p.G315G	.	.	.
CCDC64	92558	broad.mit.edu	36	12	118986955	118986955	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207311	exon4	c.G798T	p.E266D	.	.	.
MSI1	4440	broad.mit.edu	36	12	119286911	119286911	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002442	exon5	c.G298A	p.A100T	 MSI1,central_nervous_system,brain,Substitution - Missense,0 	.	.
MLEC	9761	broad.mit.edu	36	12	119618609	119618609	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014730	exon5	c.C757T	p.R253W	.	.	.
C12orf43	64897	broad.mit.edu	36	12	119926408	119926408	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022895	exon6	c.G720A	p.K240K	.	.	.
WDR66	144406	broad.mit.edu	36	12	120846163	120846163	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178003	exon3	c.G631T	p.E211X	.	.	.
WDR66	144406	broad.mit.edu	36	12	120876570	120876570	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178003	exon10	c.T1482C	p.C494C	.	.	.
WDR66	144406	broad.mit.edu	36	12	120922023	120922023	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144668	exon20	c.G3025A	p.E1009K	.	.	.
MLXIP	22877	broad.mit.edu	36	12	121185821	121185821	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014938	exon10	c.C1830A	p.V610V	.	.	.
CLIP1	6249	broad.mit.edu	36	12	121329543	121329543	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198240	exon20	c.G3612T	p.E1204D	.	.	.
BCL2L14	79370	broad.mit.edu	36	12	12138748	12138748	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030766	exon5	c.A715C	p.S239R	.	.	.
LRP6	4040	broad.mit.edu	36	12	12203294	12203294	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002336	exon12	c.G2527T	p.D843Y	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122869655	122869655	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon22	c.G3551A	p.R1184Q	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122883716	122883716	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon26	c.G4294A	p.E1432K	.	.	.
ZNF664	144348	broad.mit.edu	36	12	123063300	123063300	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152437	exon6	c.G656T	p.R219I	.	.	.
UBC	7316	broad.mit.edu	36	12	123964262	123964262	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021009	exon2	c.C9A	p.I3I	.	.	.
AACS	65985	broad.mit.edu	36	12	124124433	124124433	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023928	exon2	c.G192T	p.E64D	.	.	.
TMEM132B	114795	broad.mit.edu	36	12	124704391	124704391	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052907	exon9	c.A2419C	p.N807H	.	.	.
DUSP16	80824	broad.mit.edu	36	12	12521518	12521518	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030640	exon7	c.G1514A	p.R505Q	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128125227	128125227	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133448	exon9	c.G2446A	p.V816I	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128129196	128129196	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133448	exon8	c.C1951T	p.L651F	.	.	.
DDX47	51202	broad.mit.edu	36	12	12866895	12866895	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201224	exon6	c.C595T	p.R199W	.	.	.
FZD10	11211	broad.mit.edu	36	12	129214473	129214473	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007197	exon1	c.G1033A	p.E345K	.	.	.
PIWIL1	9271	broad.mit.edu	36	12	129396364	129396364	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004764	exon4	c.G304T	p.E102X	.	.	.
GPR133	283383	broad.mit.edu	36	12	130135073	130135073	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198827	exon15	c.C1583T	p.A528V	.	.	.
EP400	57634	broad.mit.edu	36	12	131082568	131082568	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015409	exon30	c.G5869T	p.D1957Y	.	.	.
EP400	57634	broad.mit.edu	36	12	131113118	131113118	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015409	exon47	c.G8250A	p.T2750T	.	.	.
POLE	5426	broad.mit.edu	36	12	131752098	131752098	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006231	exon21	c.G2331T	p.K777N	.	.	.
POLE	5426	broad.mit.edu	36	12	131762400	131762400	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006231	exon11	c.T1100C	p.F367S	.	.	.
ZNF84	7637	broad.mit.edu	36	12	132145062	132145062	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127372	exon5	c.G1688T	p.R563I	.	.	.
ZNF10	7556	broad.mit.edu	36	12	132243235	132243235	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015394	exon5	c.C1330T	p.R444X	.	.	.
ZNF10	7556	broad.mit.edu	36	12	132243576	132243576	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015394	exon5	c.C1671T	p.T557T	.	.	.
GRIN2B	2904	broad.mit.edu	36	12	13616090	13616090	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000834	exon10	c.C2086T	p.R696C	.	.	.
GUCY2C	2984	broad.mit.edu	36	12	14721109	14721109	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004963	exon7	c.G894A	p.T298T	.	.	.
HIST4H4	121504	broad.mit.edu	36	12	14815133	14815133	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175054	exon1	c.C153A	p.I51I	.	.	.
PTPRO	5800	broad.mit.edu	36	12	15548263	15548263	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002848	exon6	c.T1260G	p.F420L	.	.	.
RERGL	79785	broad.mit.edu	36	12	18129878	18129878	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024730	exon4	c.G129A	p.K43K	.	.	.
PIK3C2G	5288	broad.mit.edu	36	12	18326349	18326349	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004570	exon2	c.G67T	p.E23X	.	.	.
PIK3C2G	5288	broad.mit.edu	36	12	18540275	18540275	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004570	exon20	c.T2683G	p.F895V	.	.	.
CACNA2D4	93589	broad.mit.edu	36	12	1854086	1854086	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172364	exon18	c.T1823G	p.I608S	.	.	.
SLCO1B3	28234	broad.mit.edu	36	12	20927738	20927738	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019844	exon12	c.A1617C	p.A539A	.	.	.
SLCO1B1	10599	broad.mit.edu	36	12	21216988	21216988	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006446	exon3	c.A222C	p.E74D	.	.	.
GOLT1B	51026	broad.mit.edu	36	12	21552680	21552680	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016072	exon3	c.C214A	p.L72M	.	.	.
GYS2	2998	broad.mit.edu	36	12	21607454	21607454	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021957	exon6	c.G916T	p.D306Y	.	.	.
SLC6A13	6540	broad.mit.edu	36	12	216627	216627	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190997	exon4	c.C378A	p.I126I	.	.	.
ABCC9	10060	broad.mit.edu	36	12	21970174	21970174	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020297	exon3	c.C375T	p.I125I	.	.	.
ST8SIA1	6489	broad.mit.edu	36	12	22331417	22331417	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003034	exon2	c.T314C	p.M105T	.	.	.
KIAA0528	9847	broad.mit.edu	36	12	22498226	22498226	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014802	exon24	c.T2742C	p.G914G	.	.	.
KIAA0528	9847	broad.mit.edu	36	12	22568732	22568732	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014802	exon6	c.G542A	p.R181Q	.	.	.
SOX5	6660	broad.mit.edu	36	12	23580694	23580694	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152989	exon17	c.C1909T	p.R637C	.	.	.
CASC1	55259	broad.mit.edu	36	12	25152912	25152912	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001082973	exon15	c.C1988A	p.S663Y	.	.	.
CASC1	55259	broad.mit.edu	36	12	25152992	25152992	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001082973	exon15	c.G1908T	p.E636D	.	.	.
KRAS	3845	broad.mit.edu	36	12	25269914	25269914	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004985	exon4	c.A351C	p.K117N	 KRAS,large_intestine,NS,Substitution - Missense,0 	.	.
IFLTD1	160492	broad.mit.edu	36	12	25590613	25590613	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145727	exon2	c.T201G	p.F67L	.	.	.
IFLTD1	160492	broad.mit.edu	36	12	25593699	25593699	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145728	exon3	c.G138T	p.K46N	.	.	.
CACNA1C	775	broad.mit.edu	36	12	2588073	2588073	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001129842	exon27	c.C3492T	p.F1164F	.	.	.
BHLHE41	79365	broad.mit.edu	36	12	26167843	26167843	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030762	exon4	c.T333C	p.I111I	.	.	.
ITPR2	3709	broad.mit.edu	36	12	26530314	26530314	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002223	exon41	c.G5801A	p.R1934Q	.	.	.
ITPR2	3709	broad.mit.edu	36	12	26538445	26538445	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002223	exon39	c.G5278A	p.D1760N	.	.	.
ITPR2	3709	broad.mit.edu	36	12	26594482	26594482	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002223	exon37	c.G5038T	p.E1680X	.	.	.
ITPR2	3709	broad.mit.edu	36	12	26703391	26703391	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002223	exon16	c.G1808T	p.R603I	.	.	.
TM7SF3	51768	broad.mit.edu	36	12	27047581	27047581	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016551	exon2	c.A101C	p.E34A	.	.	.
FOXM1	2305	broad.mit.edu	36	12	2851615	2851615	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_202003	exon3	c.C562T	p.R188X	.	.	.
KDM5A	5927	broad.mit.edu	36	12	287192	287192	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042603	exon23	c.G3619T	p.E1207X	.	.	.
ERGIC2	51290	broad.mit.edu	36	12	29385377	29385377	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016570	exon14	c.T1113G	p.L371L	.	.	.
OVCH1	341350	broad.mit.edu	36	12	29488369	29488369	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183378	exon24	c.G2993T	p.R998I	.	.	.
OVCH1	341350	broad.mit.edu	36	12	29495565	29495565	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183378	exon22	c.A2735G	p.H912R	.	.	.
TMTC1	83857	broad.mit.edu	36	12	29580475	29580475	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193451	exon11	c.T1719G	p.D573E	.	.	.
IPO8	10526	broad.mit.edu	36	12	30697204	30697204	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006390	exon18	c.G2038T	p.E680X	.	.	.
IPO8	10526	broad.mit.edu	36	12	30718201	30718201	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006390	exon8	c.G899A	p.G300D	.	.	.
IPO8	10526	broad.mit.edu	36	12	30724698	30724698	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006390	exon5	c.T624G	p.F208L	.	.	.
KDM5A	5927	broad.mit.edu	36	12	311323	311323	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042603	exon13	c.T1696A	p.F566I	.	.	.
SYT10	341359	broad.mit.edu	36	12	33451488	33451488	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198992	exon3	c.G580T	p.E194X	.	.	.
ALG10	84920	broad.mit.edu	36	12	34066960	34066960	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032834	exon1	c.C159A	p.F53L	.	.	.
PRMT8	56341	broad.mit.edu	36	12	3533080	3533080	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019854	exon4	c.C420T	p.I140I	.	.	.
KIF21A	55605	broad.mit.edu	36	12	38021163	38021163	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173465	exon14	c.C1883T	p.A628V	.	.	.
KIF21A	55605	broad.mit.edu	36	12	38048020	38048020	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173465	exon4	c.C532A	p.H178N	.	.	.
ABCD2	225	broad.mit.edu	36	12	38297186	38297186	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005164	exon2	c.A991T	p.N331Y	.	.	.
ABCD2	225	broad.mit.edu	36	12	38298984	38298984	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005164	exon1	c.A701G	p.D234G	.	.	.
ARID2	196528	broad.mit.edu	36	12	44529005	44529005	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152641	exon13	c.T1700G	p.F567C	.	.	.
SRSF2IP	9169	broad.mit.edu	36	12	44602998	44602998	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004719	exon13	c.G4113A	p.S1371S	.	.	.
AKAP3	10566	broad.mit.edu	36	12	4606573	4606573	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006422	exon4	c.G1756T	p.E586X	.	.	.
SENP1	29843	broad.mit.edu	36	12	46754587	46754587	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014554	exon8	c.T727G	p.S243A	.	.	.
PFKM	5213	broad.mit.edu	36	12	46812973	46812973	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166686	exon7	c.G506A	p.R169Q	.	.	.
C12orf54	121273	broad.mit.edu	36	12	47173010	47173010	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152319	exon7	c.C207A	p.C69X	.	.	.
OR8S1	341568	broad.mit.edu	36	12	47205977	47205977	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005203	exon1	c.C296T	p.A99V	.	.	.
DHH	50846	broad.mit.edu	36	12	47774527	47774527	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021044	exon1	c.C36T	p.C12C	.	.	.
KCNH3	23416	broad.mit.edu	36	12	48234533	48234533	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012284	exon11	c.G2065A	p.A689T	.	.	.
BCDIN3D	144233	broad.mit.edu	36	12	48518842	48518842	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181708	exon2	c.T458G	p.F153C	.	.	.
SMARCD1	6602	broad.mit.edu	36	12	48768615	48768615	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139071	exon6	c.C699A	p.F233L	.	.	.
DIP2B	57609	broad.mit.edu	36	12	49411521	49411521	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173602	exon31	c.T3744G	p.T1248T	.	.	.
TMPRSS12	283471	broad.mit.edu	36	12	49567358	49567358	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182559	exon5	c.G842T	p.R281I	.	.	.
KCNA5	3741	broad.mit.edu	36	12	5024070	5024070	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002234	exon1	c.G496A	p.D166N	.	.	.
KRT6A	3853	broad.mit.edu	36	12	51171180	51171180	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005554	exon3	c.T799G	p.F267V	.	.	.
KRT3	3850	broad.mit.edu	36	12	51472797	51472797	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057088	exon4	c.G988T	p.D330Y	.	.	.
SP7	121340	broad.mit.edu	36	12	52008203	52008203	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152860	exon2	c.G1290A	p.E430E	.	.	.
SMUG1	23583	broad.mit.edu	36	12	52863795	52863795	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014311	exon3	c.G197A	p.R66H	.	.	.
ZNF385A	25946	broad.mit.edu	36	12	53055915	53055915	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015481	exon2	c.C178A	p.Q60K	.	.	.
GTSF1	121355	broad.mit.edu	36	12	53151288	53151288	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144594	exon2	c.T12G	p.T4T	.	.	.
OR6C1	390321	broad.mit.edu	36	12	54000842	54000842	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005182	exon1	c.C192T	p.F64F	.	.	.
OR6C75	390323	broad.mit.edu	36	12	54045939	54045939	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005497	exon1	c.A778G	p.T260A	.	.	.
OR6C75	390323	broad.mit.edu	36	12	54046087	54046087	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005497	exon1	c.C926A	p.S309Y	.	.	.
OR6C65	403282	broad.mit.edu	36	12	54080913	54080913	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005518	exon1	c.C334A	p.L112I	.	.	.
OR6C2	341416	broad.mit.edu	36	12	54132729	54132729	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_054105	exon1	c.T465C	p.V155V	.	.	.
ITGA7	3679	broad.mit.edu	36	12	54376350	54376350	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144997	exon13	c.G1592T	p.S531I	.	.	.
IKZF4	64375	broad.mit.edu	36	12	54703801	54703801	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022465	exon2	c.C167A	p.S56Y	.	.	.
PAN2	9924	broad.mit.edu	36	12	55004532	55004532	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166279	exon12	c.C1741A	p.L581I	.	.	.
STAT2	6773	broad.mit.edu	36	12	55023556	55023556	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198332	exon24	c.G2428T	p.E810X	.	.	.
STAT2	6773	broad.mit.edu	36	12	55023902	55023902	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198332	exon23	c.G2375T	p.R792I	.	.	.
ATP5B	506	broad.mit.edu	36	12	55320063	55320063	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001686	exon8	c.G1255A	p.D419N	.	.	.
MYO1A	4640	broad.mit.edu	36	12	55728297	55728297	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005379	exon2	c.G78T	p.K26N	.	.	.
INHBC	3626	broad.mit.edu	36	12	56129421	56129421	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005538	exon2	c.C408A	p.F136L	.	.	.
ARHGAP9	64333	broad.mit.edu	36	12	56155446	56155446	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080156	exon10	c.C895T	p.R299W	.	.	.
KIF5A	3798	broad.mit.edu	36	12	56249057	56249057	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004984	exon9	c.G759T	p.K253N	.	.	.
PIP4K2C	79837	broad.mit.edu	36	12	56279212	56279212	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146258	exon5	c.G611A	p.R204H	.	.	.
ARHGEF25	115557	broad.mit.edu	36	12	56293077	56293077	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111270	exon3	c.C312T	p.G104G	.	.	.
AGAP2	116986	broad.mit.edu	36	12	56412924	56412924	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014770	exon6	c.G647A	p.G216E	.	.	.
CDK4	1019	broad.mit.edu	36	12	56431079	56431079	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000075	exon4	c.G416A	p.R139Q	.	.	.
METTL1	4234	broad.mit.edu	36	12	56451187	56451187	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005371	exon2	c.A231C	p.Q77H	.	.	.
LRIG3	121227	broad.mit.edu	36	12	57568417	57568417	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153377	exon7	c.G908A	p.S303N	.	.	.
FAM19A2	338811	broad.mit.edu	36	12	60433717	60433717	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178539	exon4	c.C337T	p.R113W	.	.	.
MON2	23041	broad.mit.edu	36	12	61236068	61236068	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015026	exon25	c.C3238T	p.R1080X	.	.	.
DPY19L2	283417	broad.mit.edu	36	12	62260796	62260796	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173812	exon19	c.C1813A	p.L605I	.	.	.
TMEM5	10329	broad.mit.edu	36	12	62482268	62482268	+	De_novo_Start_OutOfFrame	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014254	exon4	c.T559G	p.L187V	.	.	.
SRGAP1	57522	broad.mit.edu	36	12	62822534	62822534	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020762	exon22	c.C3073T	p.R1025X	.	.	.
C12orf56	115749	broad.mit.edu	36	12	63032975	63032975	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170633	exon2	c.T381C	p.F127F	.	.	.
TMBIM4	51643	broad.mit.edu	36	12	64849915	64849915	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016056	exon1	c.G84A	p.V28V	.	.	.
IFFO1	25900	broad.mit.edu	36	12	6534709	6534709	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193457	exon1	c.C748A	p.R250R	.	.	.
CHD4	1108	broad.mit.edu	36	12	6570953	6570953	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001273	exon22	c.G3280A	p.E1094K	.	.	.
DYRK2	8445	broad.mit.edu	36	12	66338040	66338040	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003583	exon2	c.C867T	p.S289S	.	.	.
IFNG	3458	broad.mit.edu	36	12	66839558	66839558	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000619	exon1	c.G105T	p.K35N	.	.	.
IL22	50616	broad.mit.edu	36	12	66932846	66932846	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020525	exon2	c.C217T	p.R73C	.	.	.
MDM1	56890	broad.mit.edu	36	12	66975322	66975322	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017440	exon14	c.G2124T	p.E708D	.	.	.
NUP107	57122	broad.mit.edu	36	12	67390089	67390089	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020401	exon10	c.A839G	p.E280G	.	.	.
NUP107	57122	broad.mit.edu	36	12	67413639	67413639	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020401	exon24	c.T2242G	p.L748V	.	.	.
NUP107	57122	broad.mit.edu	36	12	67421945	67421945	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020401	exon27	c.C2588T	p.T863M	.	.	.
BEST3	144453	broad.mit.edu	36	12	68356987	68356987	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032735	exon7	c.C843A	p.F281L	.	.	.
KCNMB4	27345	broad.mit.edu	36	12	69110694	69110694	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014505	exon3	c.C627A	p.F209L	.	.	.
TBC1D15	64786	broad.mit.edu	36	12	70574391	70574391	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022771	exon7	c.G677T	p.R226I	.	.	.
TBC1D15	64786	broad.mit.edu	36	12	70577953	70577953	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146214	exon11	c.G1172T	p.R391I	.	.	.
TRHDE	29953	broad.mit.edu	36	12	71058045	71058045	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013381	exon3	c.C1057T	p.R353X	.	.	.
TRHDE	29953	broad.mit.edu	36	12	71255385	71255385	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013381	exon11	c.G2080T	p.D694Y	.	.	.
GLIPR1L1	256710	broad.mit.edu	36	12	74027769	74027769	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152779	exon3	c.C521A	p.A174E	.	.	.
CD163L1	283316	broad.mit.edu	36	12	7422942	7422942	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174941	exon9	c.C2270A	p.S757Y	.	.	.
NAP1L1	4673	broad.mit.edu	36	12	74739846	74739846	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004537	exon6	c.C428T	p.S143L	.	.	.
CD163	9332	broad.mit.edu	36	12	7546346	7546346	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203416	exon2	c.C128A	p.S43Y	.	.	.
SLC2A14	144195	broad.mit.edu	36	12	7865085	7865085	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153449	exon9	c.C1037A	p.S346Y	.	.	.
MYF5	4617	broad.mit.edu	36	12	79635075	79635075	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005593	exon1	c.G102A	p.P34P	.	.	.
TMTC2	160335	broad.mit.edu	36	12	81775338	81775338	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152588	exon2	c.A502C	p.T168P	.	.	.
TMTC2	160335	broad.mit.edu	36	12	81814079	81814079	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152588	exon3	c.G1006T	p.E336X	.	.	.
LRRIQ1	84125	broad.mit.edu	36	12	83962695	83962695	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032165	exon4	c.G313T	p.E105X	.	.	.
LRRIQ1	84125	broad.mit.edu	36	12	84045876	84045876	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079910	exon18	c.G4143T	p.K1381N	.	.	.
LRRIQ1	84125	broad.mit.edu	36	12	84147479	84147479	+	Missense_Mutation	SNP	C	T	T	rs1395676	byCluster;byFrequency;byHapMap	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079910	exon25	c.C4876T	p.R1626W	.	.	.
RASSF9	9182	broad.mit.edu	36	12	84722867	84722867	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005447	exon2	c.A1052G	p.Q351R	.	.	.
RASSF9	9182	broad.mit.edu	36	12	84723423	84723423	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005447	exon2	c.C496T	p.R166W	.	.	.
NTS	4922	broad.mit.edu	36	12	84800233	84800233	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006183	exon4	c.G462T	p.E154D	.	.	.
MGAT4C	25834	broad.mit.edu	36	12	84907343	84907343	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013244	exon5	c.T113G	p.F38C	.	.	.
CLEC4E	26253	broad.mit.edu	36	12	8581071	8581071	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014358	exon4	c.C279A	p.F93L	.	.	.
WNK1	65125	broad.mit.edu	36	12	864916	864916	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184985	exon19	c.C5465A	p.S1822Y	.	.	.
CEP290	80184	broad.mit.edu	36	12	87000961	87000961	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025114	exon37	c.G4990T	p.E1664X	.	.	.
KERA	11081	broad.mit.edu	36	12	89973480	89973480	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007035	exon2	c.C710A	p.P237H	.	.	.
A2M	2	broad.mit.edu	36	12	9156055	9156055	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000014	exon4	c.C450T	p.S150S	.	.	.
PZP	5858	broad.mit.edu	36	12	9204926	9204926	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002864	exon23	c.G2842T	p.E948X	.	.	.
CRADD	8738	broad.mit.edu	36	12	92768097	92768097	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003805	exon3	c.G519A	p.K173K	.	.	.
CCDC41	51134	broad.mit.edu	36	12	93287937	93287937	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016122	exon9	c.G940T	p.E314X	.	.	.
CCDC41	51134	broad.mit.edu	36	12	93329648	93329648	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016122	exon4	c.G280T	p.E94X	.	.	.
USP44	84101	broad.mit.edu	36	12	94451332	94451332	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042403	exon2	c.T832G	p.L278V	.	.	.
TMPO	7112	broad.mit.edu	36	12	97450817	97450817	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003276	exon4	c.A651G	p.G217G	.	.	.
SLC25A3	5250	broad.mit.edu	36	12	97519176	97519176	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002635	exon7	c.G911T	p.R304I	.	.	.
APAF1	317	broad.mit.edu	36	12	97617351	97617351	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013229	exon17	c.G2306T	p.S769I	.	.	.
APAF1	317	broad.mit.edu	36	12	97621408	97621408	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013229	exon18	c.G2562A	p.E854E	.	.	.
CD69	969	broad.mit.edu	36	12	9800200	9800200	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001781	exon2	c.C147A	p.V49V	.	.	.
ANKS1B	56899	broad.mit.edu	36	12	98164716	98164716	+	De_novo_Start_OutOfFrame	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152788	exon13	c.T1814G	p.F605C	.	.	.
KLRF1	51348	broad.mit.edu	36	12	9877285	9877285	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016523	exon3	c.C304A	p.L102I	.	.	.
UHRF1BP1L	23074	broad.mit.edu	36	12	98977330	98977330	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015054	exon14	c.G1856A	p.R619Q	.	.	.
DEPDC4	120863	broad.mit.edu	36	12	99180191	99180191	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152317	exon3	c.C682A	p.L228I	.	.	.
SCYL2	55681	broad.mit.edu	36	12	99253558	99253558	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017988	exon15	c.G1887T	p.M629I	.	.	.
ANO4	121601	broad.mit.edu	36	12	99860385	99860385	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178826	exon4	c.G292T	p.E98X	.	.	.
PLEKHA9	51054	broad.mit.edu	36	12	43853773	43853773	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TMTC4	84899	broad.mit.edu	36	13	100055342	100055342	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032813	exon19	c.C2190A	p.I730I	.	.	.
NALCN	259232	broad.mit.edu	36	13	100827065	100827065	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052867	exon6	c.G631T	p.D211Y	.	.	.
FGF14	2259	broad.mit.edu	36	13	101177131	101177131	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175929	exon4	c.G454T	p.E152X	.	.	.
TPP2	7174	broad.mit.edu	36	13	102087484	102087484	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003291	exon14	c.C1730A	p.S577X	.	.	.
TPP2	7174	broad.mit.edu	36	13	102093670	102093670	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003291	exon17	c.C2118A	p.F706L	.	.	.
MYO16	23026	broad.mit.edu	36	13	108415143	108415143	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198950	exon20	c.T2261C	p.I754T	.	.	.
MYO16	23026	broad.mit.edu	36	13	108551198	108551198	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198950	exon28	c.C3400T	p.R1134X	.	.	.
COL4A1	1282	broad.mit.edu	36	13	109662959	109662959	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001845	exon5	c.C287T	p.P96L	.	.	.
ARHGEF7	8874	broad.mit.edu	36	13	110736575	110736575	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113512	exon16	c.C1944T	p.F648F	.	.	.
ATP11A	23250	broad.mit.edu	36	13	112525720	112525720	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015205	exon9	c.C786A	p.I262I	.	.	.
MCF2L	23263	broad.mit.edu	36	13	112778467	112778467	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024979	exon12	c.C1507A	p.L503I	.	.	.
F7	2155	broad.mit.edu	36	13	112816075	112816075	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000131	exon4	c.C300A	p.F100L	.	.	.
F7	2155	broad.mit.edu	36	13	112818003	112818003	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000131	exon6	c.C459T	p.N153N	.	.	.
PCID2	55795	broad.mit.edu	36	13	112902749	112902749	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018386	exon2	c.G119A	p.R40Q	.	.	.
DCUN1D2	55208	broad.mit.edu	36	13	113176490	113176490	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014283	exon4	c.T470G	p.F157C	.	.	.
FAM70B	348013	broad.mit.edu	36	13	113644827	113644827	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182614	exon2	c.G75A	p.S25S	.	.	.
RASA3	22821	broad.mit.edu	36	13	113813401	113813401	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007368	exon5	c.A437C	p.K146T	.	.	.
UPF3A	65110	broad.mit.edu	36	13	114082461	114082461	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023011	exon8	c.A891T	p.K297N	.	.	.
TPTE2	93492	broad.mit.edu	36	13	18937687	18937687	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001141968	exon7	c.G197A	p.R66Q	.	.	.
TPTE2	93492	broad.mit.edu	36	13	18965596	18965596	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001141968	exon4	c.G57A	p.A19A	.	.	.
XPO4	64328	broad.mit.edu	36	13	20255898	20255898	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022459	exon23	c.T3419G	p.F1140C	.	.	.
SACS	26278	broad.mit.edu	36	13	22804348	22804348	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014363	exon10	c.G11667T	p.Q3889H	.	.	.
SACS	26278	broad.mit.edu	36	13	22808439	22808439	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014363	exon10	c.G7576T	p.E2526X	.	.	.
SACS	26278	broad.mit.edu	36	13	22810095	22810095	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014363	exon10	c.G5920T	p.E1974X	.	.	.
ATP12A	479	broad.mit.edu	36	13	24157487	24157487	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185085	exon3	c.G204T	p.E68D	.	.	.
ATP12A	479	broad.mit.edu	36	13	24181563	24181563	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185085	exon18	c.G2573A	p.R858H	.	.	.
RNF17	56163	broad.mit.edu	36	13	24272666	24272666	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184993	exon13	c.G1752T	p.Q584H	.	.	.
RNF17	56163	broad.mit.edu	36	13	24331165	24331165	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184993	exon26	c.G3625T	p.E1209X	.	.	.
RPL21	6144	broad.mit.edu	36	13	26725958	26725958	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000982	exon2	c.C45A	p.F15L	.	.	.
FLT1	2321	broad.mit.edu	36	13	27775417	27775417	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002019	exon30	c.G3904A	p.E1302K	.	.	.
FLT1	2321	broad.mit.edu	36	13	27857071	27857071	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002019	exon14	c.G2067A	p.E689E	.	.	.
USPL1	10208	broad.mit.edu	36	13	30129710	30129710	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005800	exon9	c.G1496T	p.R499I	.	.	.
HSPH1	10808	broad.mit.edu	36	13	30623253	30623253	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006644	exon7	c.G739T	p.E247X	.	.	.
B3GALTL	145173	broad.mit.edu	36	13	30748891	30748891	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194318	exon10	c.A833C	p.K278T	.	.	.
B3GALTL	145173	broad.mit.edu	36	13	30801690	30801690	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194318	exon15	c.C1382T	p.S461L	.	.	.
RXFP2	122042	broad.mit.edu	36	13	31274345	31274345	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166058	exon17	c.C1996A	p.L666I	.	.	.
FRY	10129	broad.mit.edu	36	13	31589601	31589601	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023037	exon4	c.A455C	p.K152T	.	.	.
FRY	10129	broad.mit.edu	36	13	31643193	31643193	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023037	exon18	c.A1937C	p.N646T	.	.	.
PDS5B	23047	broad.mit.edu	36	13	32204319	32204319	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015032	exon20	c.G2205A	p.A735A	.	.	.
KL	9365	broad.mit.edu	36	13	32527245	32527245	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004795	exon3	c.C1392T	p.F464F	.	.	.
NBEA	26960	broad.mit.edu	36	13	34542979	34542979	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015678	exon10	c.A1561G	p.T521A	.	.	.
NBEA	26960	broad.mit.edu	36	13	35139662	35139662	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015678	exon56	c.T8553G	p.I2851M	.	.	.
SOHLH2	54937	broad.mit.edu	36	13	35641178	35641178	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017826	exon11	c.C1271T	p.A424V	.	.	.
SOHLH2	54937	broad.mit.edu	36	13	35646698	35646698	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017826	exon8	c.G796A	p.E266K	.	.	.
SOHLH2	54937	broad.mit.edu	36	13	35662118	35662118	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017826	exon6	c.C606A	p.I202I	.	.	.
C13orf36	400120	broad.mit.edu	36	13	36167237	36167237	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203451	exon2	c.T22A	p.S8T	.	.	.
FAM48A	55578	broad.mit.edu	36	13	36491528	36491528	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017569	exon22	c.C1826A	p.P609Q	.	.	.
CSNK1A1L	122011	broad.mit.edu	36	13	36577085	36577085	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145203	exon1	c.C309A	p.F103L	.	.	.
POSTN	10631	broad.mit.edu	36	13	37041945	37041945	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135934	exon18	c.A2112C	p.K704N	.	.	.
FREM2	341640	broad.mit.edu	36	13	38162954	38162954	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207361	exon1	c.C3473A	p.P1158H	.	.	.
NHLRC3	387921	broad.mit.edu	36	13	38519980	38519980	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017370	exon6	c.G760A	p.A254T	.	.	.
KBTBD6	89890	broad.mit.edu	36	13	40603574	40603574	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152903	exon1	c.C1074T	p.C358C	.	.	.
KIAA0564	23078	broad.mit.edu	36	13	41191845	41191845	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015058	exon26	c.C2998T	p.R1000X	.	.	.
KIAA0564	23078	broad.mit.edu	36	13	41283401	41283401	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015058	exon17	c.G2023T	p.E675X	.	.	.
DGKH	160851	broad.mit.edu	36	13	41670653	41670653	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178009	exon18	c.C2207T	p.S736L	.	.	.
DGKH	160851	broad.mit.edu	36	13	41691871	41691871	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178009	exon28	c.G3383A	p.R1128Q	.	.	.
EPSTI1	94240	broad.mit.edu	36	13	42442765	42442765	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033255	exon2	c.G230T	p.R77I	.	.	.
ZC3H13	23091	broad.mit.edu	36	13	45514331	45514331	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015070	exon4	c.G308A	p.R103Q	.	.	.
C13orf18	80183	broad.mit.edu	36	13	45840917	45840917	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025113	exon4	c.G570A	p.S190S	.	.	.
CAB39L	81617	broad.mit.edu	36	13	48849200	48849200	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030925	exon3	c.A180G	p.E60E	.	.	.
PHF11	51131	broad.mit.edu	36	13	48990283	48990283	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040443	exon4	c.T453G	p.I151M	.	.	.
RCBTB1	55213	broad.mit.edu	36	13	49013898	49013898	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018191	exon11	c.C1239T	p.I413I	.	.	.
TRIM13	10206	broad.mit.edu	36	13	49484914	49484914	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005798	exon3	c.G837T	p.K279N	.	.	.
NEK3	4752	broad.mit.edu	36	13	51605881	51605881	+	Missense_Mutation	SNP	C	T	T	rs34076988	byCluster	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146099	exon14	c.G1330A	p.D444N	.	.	.
PCDH17	27253	broad.mit.edu	36	13	57138888	57138888	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040429	exon3	c.A2717C	p.K906T	.	.	.
DIAPH3	81624	broad.mit.edu	36	13	59246347	59246347	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030932	exon21	c.C2507A	p.P836H	.	.	.
PCDH20	64881	broad.mit.edu	36	13	60884054	60884054	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022843	exon2	c.A2179C	p.K727Q	.	.	.
PCDH9	5101	broad.mit.edu	36	13	66697572	66697572	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020403	exon2	c.G3002A	p.G1001D	.	.	.
DIS3	22894	broad.mit.edu	36	13	72244315	72244315	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128226	exon10	c.G1396A	p.E466K	.	.	.
LMO7	4008	broad.mit.edu	36	13	75185330	75185330	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005358	exon3	c.G237T	p.E79D	.	.	.
LMO7	4008	broad.mit.edu	36	13	75307475	75307475	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015842	exon15	c.C2633A	p.S878Y	.	.	.
LMO7	4008	broad.mit.edu	36	13	75308564	75308564	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015842	exon16	c.C2665T	p.H889Y	.	.	.
CLN5	1203	broad.mit.edu	36	13	76467311	76467311	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006493	exon2	c.C433T	p.R145X	.	.	.
MYCBP2	23077	broad.mit.edu	36	13	76653925	76653925	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015057	exon33	c.C4853A	p.S1618X	.	.	.
MYCBP2	23077	broad.mit.edu	36	13	76751005	76751005	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015057	exon4	c.G637T	p.E213X	.	.	.
SCEL	8796	broad.mit.edu	36	13	77031972	77031972	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160706	exon4	c.G194A	p.R65Q	.	.	.
SCEL	8796	broad.mit.edu	36	13	77075262	77075262	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001160706	exon17	c.A1022C	p.N341T	.	.	.
EDNRB	1910	broad.mit.edu	36	13	77373214	77373214	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122659	exon4	c.T931C	p.L311L	.	.	.
RBM26	64062	broad.mit.edu	36	13	78827466	78827466	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022118	exon12	c.G1744T	p.E582X	.	.	.
SLITRK1	114798	broad.mit.edu	36	13	83353339	83353339	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052910	exon1	c.T305G	p.F102C	.	.	.
SLITRK6	84189	broad.mit.edu	36	13	85266776	85266776	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032229	exon2	c.C1869A	p.F623L	.	.	.
SLITRK6	84189	broad.mit.edu	36	13	85268277	85268277	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032229	exon2	c.C368A	p.S123Y	.	.	.
DZIP1	22873	broad.mit.edu	36	13	95039452	95039452	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014934	exon18	c.A1927C	p.N643H	.	.	.
DZIP1	22873	broad.mit.edu	36	13	95061742	95061742	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014934	exon12	c.G1321T	p.D441Y	.	.	.
UGGT2	55757	broad.mit.edu	36	13	95338200	95338200	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020121	exon26	c.G2985T	p.K995N	.	.	.
IPO5	3843	broad.mit.edu	36	13	97435735	97435735	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002271	exon6	c.C285A	p.V95V	.	.	.
DOCK9	23348	broad.mit.edu	36	13	98352690	98352690	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130050	exon12	c.T1233G	p.I411M	.	.	.
GPR183	1880	broad.mit.edu	36	13	98746120	98746120	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004951	exon2	c.G281A	p.G94D	.	.	.
DYNC1H1	1778	broad.mit.edu	36	14	101536484	101536484	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001376	exon18	c.C4069T	p.R1357X	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104482042	104482042	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138420	exon7	c.C10791T	p.V3597V	.	.	.
OR4K2	390431	broad.mit.edu	36	14	19414506	19414506	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005501	exon1	c.G240T	p.K80N	.	.	.
OR11H6	122748	broad.mit.edu	36	14	19761714	19761714	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004480	exon1	c.C6A	p.F2L	.	.	.
OR11H6	122748	broad.mit.edu	36	14	19762222	19762222	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004480	exon1	c.C514A	p.L172I	.	.	.
OR11H4	390442	broad.mit.edu	36	14	19780904	19780904	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004479	exon1	c.C114A	p.F38L	.	.	.
OR11H4	390442	broad.mit.edu	36	14	19781000	19781000	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004479	exon1	c.C210A	p.Y70X	.	.	.
PARP2	10038	broad.mit.edu	36	14	19883035	19883035	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042618	exon2	c.C151T	p.P51S	.	.	.
TEP1	7011	broad.mit.edu	36	14	19933568	19933568	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007110	exon12	c.G1809T	p.K603N	.	.	.
RNASE10	338879	broad.mit.edu	36	14	20048912	20048912	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012975	exon1	c.G442T	p.V148F	.	.	.
RNASE11	122651	broad.mit.edu	36	14	20122341	20122341	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145250	exon3	c.G133T	p.E45X	.	.	.
EDDM3A	10876	broad.mit.edu	36	14	20285751	20285751	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006683	exon2	c.G172T	p.E58X	.	.	.
SLC39A2	29986	broad.mit.edu	36	14	20539090	20539090	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014579	exon4	c.G442A	p.E148K	.	.	.
RPGRIP1	57096	broad.mit.edu	36	14	20863279	20863279	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020366	exon15	c.G2264A	p.R755H	.	.	.
SALL2	6297	broad.mit.edu	36	14	21061885	21061885	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005407	exon2	c.C1817T	p.A606V	.	.	.
MMP14	4323	broad.mit.edu	36	14	22381511	22381511	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004995	exon4	c.C433T	p.R145C	.	.	.
LRP10	26020	broad.mit.edu	36	14	22416218	22416218	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014045	exon7	c.G1784A	p.G595D	.	.	.
ACIN1	22985	broad.mit.edu	36	14	22598382	22598382	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164816	exon12	c.C1660T	p.R554W	.	.	.
CMTM5	116173	broad.mit.edu	36	14	22918089	22918089	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138460	exon3	c.C289T	p.R97C	.	.	.
MYH7	4625	broad.mit.edu	36	14	22956630	22956630	+	Silent	SNP	G	A	A	rs57680382	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000257	exon31	c.C4275T	p.I1425I	.	.	.
AP1G2	8906	broad.mit.edu	36	14	23099386	23099386	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003917	exon20	c.C2075T	p.A692V	.	.	.
MDP1	145553	broad.mit.edu	36	14	23753399	23753399	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199822	exon5	c.C360A	p.F120L	.	.	.
RIPK3	11035	broad.mit.edu	36	14	23878235	23878235	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006871	exon3	c.C297T	p.N99N	.	.	.
FOXG1	2290	broad.mit.edu	36	14	28307497	28307497	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005249	exon1	c.G1261A	p.V421I	.	.	.
PRKD1	5587	broad.mit.edu	36	14	29169894	29169894	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002742	exon10	c.G1477A	p.E493K	.	.	.
HEATR5A	25938	broad.mit.edu	36	14	30854770	30854770	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015473	exon21	c.C3296T	p.A1099V	.	.	.
AKAP6	9472	broad.mit.edu	36	14	32116084	32116084	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004274	exon5	c.T2354C	p.V785A	.	.	.
AKAP6	9472	broad.mit.edu	36	14	32274797	32274797	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004274	exon11	c.G3330T	p.K1110N	.	.	.
KIAA0391	9692	broad.mit.edu	36	14	34662906	34662906	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014672	exon2	c.A704G	p.D235G	.	.	.
RALGAPA1	253959	broad.mit.edu	36	14	35211927	35211927	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194301	exon24	c.T3452G	p.L1151R	.	.	.
RALGAPA1	253959	broad.mit.edu	36	14	35287601	35287601	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194301	exon10	c.C1192T	p.R398C	.	.	.
PNN	5411	broad.mit.edu	36	14	38720475	38720475	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002687	exon9	c.G1811A	p.R604H	.	.	.
FSCB	84075	broad.mit.edu	36	14	44045012	44045012	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032135	exon1	c.C929T	p.A310V	.	.	.
MDGA2	161357	broad.mit.edu	36	14	46394090	46394090	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182830	exon15	c.C1876A	p.L626I	.	.	.
SDCCAG1	9147	broad.mit.edu	36	14	49368729	49368729	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004713	exon9	c.A752C	p.K251T	.	.	.
PYGL	5836	broad.mit.edu	36	14	50448716	50448716	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002863	exon14	c.A1676G	p.N559S	.	.	.
PYGL	5836	broad.mit.edu	36	14	50453479	50453479	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002863	exon8	c.T950C	p.F317S	.	.	.
C14orf166	51637	broad.mit.edu	36	14	51540906	51540906	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016039	exon8	c.C657A	p.I219I	.	.	.
NID2	22795	broad.mit.edu	36	14	51566150	51566150	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007361	exon10	c.G2266T	p.D756Y	.	.	.
NID2	22795	broad.mit.edu	36	14	51590692	51590692	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007361	exon4	c.G865A	p.A289T	.	.	.
ERO1L	30001	broad.mit.edu	36	14	52194459	52194459	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014584	exon11	c.G734T	p.R245I	.	.	.
FERMT2	10979	broad.mit.edu	36	14	52486931	52486931	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134999	exon2	c.A106G	p.T36A	.	.	.
SOCS4	122809	broad.mit.edu	36	14	54580202	54580202	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080867	exon2	c.C690T	p.S230S	.	.	.
FBXO34	55030	broad.mit.edu	36	14	54887857	54887857	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152231	exon2	c.C996A	p.V332V	.	.	.
MUDENG	55745	broad.mit.edu	36	14	56811043	56811043	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018229	exon2	c.C403A	p.L135I	.	.	.
C14orf105	55195	broad.mit.edu	36	14	57027467	57027467	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018168	exon2	c.G299T	p.R100I	.	.	.
SLC35F4	341880	broad.mit.edu	36	14	57106284	57106284	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080455	exon6	c.C1209A	p.L403L	.	.	.
C14orf37	145407	broad.mit.edu	36	14	57668185	57668185	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001872	exon4	c.G1629T	p.M543I	.	.	.
ARID4A	5926	broad.mit.edu	36	14	57864765	57864765	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023000	exon9	c.C640T	p.R214X	.	.	.
JKAMP	51528	broad.mit.edu	36	14	59031588	59031588	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098625	exon4	c.T333G	p.I111M	.	.	.
C14orf135	64430	broad.mit.edu	36	14	59662142	59662142	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022495	exon9	c.T2413G	p.L805V	.	.	.
C14orf39	317761	broad.mit.edu	36	14	60006024	60006024	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174978	exon8	c.G655A	p.E219K	.	.	.
SIX6	4990	broad.mit.edu	36	14	60045954	60045954	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007374	exon1	c.C85T	p.R29C	.	.	.
SIX4	51804	broad.mit.edu	36	14	60256677	60256677	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017420	exon2	c.C1103A	p.S368Y	.	.	.
SIX4	51804	broad.mit.edu	36	14	60260489	60260489	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017420	exon1	c.G57T	p.E19D	.	.	.
SLC38A6	145389	broad.mit.edu	36	14	60588273	60588273	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153811	exon14	c.A1066G	p.T356A	.	.	.
KCNH5	27133	broad.mit.edu	36	14	62517498	62517498	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172376	exon6	c.G613A	p.V205I	.	.	.
KCNH5	27133	broad.mit.edu	36	14	62537903	62537903	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172376	exon4	c.T158C	p.I53T	.	.	.
KCNH5	27133	broad.mit.edu	36	14	62553349	62553349	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172375	exon2	c.C150A	p.L50L	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63666677	63666677	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015180	exon76	c.C14298T	p.T4766T	.	.	.
ZBTB1	22890	broad.mit.edu	36	14	64059578	64059578	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014950	exon2	c.C1603T	p.R535X	.	.	.
SPTB	6710	broad.mit.edu	36	14	64330152	64330152	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024858	exon13	c.C1982A	p.S661Y	.	.	.
GPHN	10243	broad.mit.edu	36	14	66695922	66695922	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024218	exon18	c.C1775T	p.A592V	.	.	.
TMEM229B	161145	broad.mit.edu	36	14	67010295	67010295	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182526	exon3	c.C99T	p.F33F	.	.	.
ZFYVE26	23503	broad.mit.edu	36	14	67319271	67319271	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015346	exon21	c.C4351A	p.L1451M	.	.	.
SMOC1	64093	broad.mit.edu	36	14	69559820	69559820	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001034852	exon11	c.G1194T	p.K398N	.	.	.
ADAM21	8747	broad.mit.edu	36	14	69995159	69995159	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003813	exon1	c.C1190A	p.P397H	.	.	.
ADAM21	8747	broad.mit.edu	36	14	69995442	69995442	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003813	exon1	c.G1473T	p.Q491H	.	.	.
ADAM21	8747	broad.mit.edu	36	14	69995759	69995759	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003813	exon1	c.T1790C	p.L597S	.	.	.
PCNX	22990	broad.mit.edu	36	14	70505535	70505535	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014982	exon5	c.C559T	p.L187L	.	.	.
PCNX	22990	broad.mit.edu	36	14	70581648	70581648	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014982	exon20	c.T3913G	p.F1305V	.	.	.
RGS6	9628	broad.mit.edu	36	14	72009408	72009408	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004296	exon9	c.G612A	p.R204R	.	.	.
RBM25	58517	broad.mit.edu	36	14	72608174	72608174	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021239	exon2	c.G72A	p.P24P	.	.	.
PAPLN	89932	broad.mit.edu	36	14	72790374	72790374	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173462	exon11	c.C1173A	p.A391A	.	.	.
ACOT4	122970	broad.mit.edu	36	14	73131742	73131742	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152331	exon3	c.C897T	p.L299L	.	.	.
NPC2	10577	broad.mit.edu	36	14	74017187	74017187	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006432	exon4	c.C412A	p.L138I	.	.	.
C14orf118	55668	broad.mit.edu	36	14	75732004	75732004	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017926	exon9	c.T1224C	p.C408C	.	.	.
TMEM63C	57156	broad.mit.edu	36	14	76782714	76782714	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020431	exon18	c.C1545A	p.V515V	.	.	.
TMEM63C	57156	broad.mit.edu	36	14	76785397	76785397	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020431	exon21	c.C1881T	p.Y627Y	.	.	.
SAMD15	161394	broad.mit.edu	36	14	76913761	76913761	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010860	exon1	c.T247C	p.S83P	.	.	.
C14orf145	145508	broad.mit.edu	36	14	80314033	80314033	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152446	exon15	c.G2322A	p.E774E	.	.	.
C14orf145	145508	broad.mit.edu	36	14	80321575	80321575	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152446	exon14	c.G1628A	p.R543Q	.	.	.
PTPN21	11099	broad.mit.edu	36	14	88008427	88008427	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007039	exon15	c.G2785T	p.D929Y	.	.	.
PTPN21	11099	broad.mit.edu	36	14	88015026	88015026	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007039	exon13	c.G2502A	p.P834P	.	.	.
TDP1	55775	broad.mit.edu	36	14	89499724	89499724	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008744	exon2	c.C513A	p.V171V	.	.	.
CATSPERB	79820	broad.mit.edu	36	14	91205942	91205942	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024764	exon14	c.G1256A	p.R419Q	.	.	.
TRIP11	9321	broad.mit.edu	36	14	91541626	91541626	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004239	exon11	c.T2447G	p.F816C	.	.	.
GOLGA5	9950	broad.mit.edu	36	14	92355854	92355854	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005113	exon8	c.T1540C	p.L514L	.	.	.
GOLGA5	9950	broad.mit.edu	36	14	92369367	92369367	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005113	exon10	c.G1867A	p.E623K	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93154453	93154453	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020818	exon29	c.G3856T	p.G1286C	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93173319	93173319	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020818	exon33	c.G5307T	p.Q1769H	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93226223	93226223	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020818	exon46	c.G6679A	p.E2227K	.	.	.
PPP4R4	57718	broad.mit.edu	36	14	93778489	93778489	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058237	exon11	c.C1257A	p.C419X	.	.	.
PPP4R4	57718	broad.mit.edu	36	14	93803096	93803096	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058237	exon23	c.A2426C	p.K809T	.	.	.
DICER1	23405	broad.mit.edu	36	14	94652725	94652725	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195573	exon9	c.G1570T	p.E524X	.	.	.
C14orf177	283598	broad.mit.edu	36	14	98253282	98253282	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182560	exon4	c.C296T	p.A99V	.	.	.
BCL11B	64919	broad.mit.edu	36	14	98710252	98710252	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138576	exon4	c.G2674A	p.E892K	.	.	.
SETD3	84193	broad.mit.edu	36	14	98934859	98934859	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032233	exon13	c.C1695A	p.S565S	.	.	.
POTEB	339010	broad.mit.edu	36	15	19336153	19336153	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207355	exon1	c.G148A	p.D50N	.	.	.
NIPA2	81614	broad.mit.edu	36	15	20557811	20557811	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008860	exon7	c.T934C	p.S312P	.	.	.
MAGEL2	54551	broad.mit.edu	36	15	21440757	21440757	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019066	exon1	c.C3226A	p.Q1076K	.	.	.
C15orf2	23742	broad.mit.edu	36	15	22472761	22472761	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018958	exon1	c.A654C	p.E218D	.	.	.
UBE3A	7337	broad.mit.edu	36	15	23166925	23166925	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130839	exon6	c.C1489T	p.R497C	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23483966	23483966	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024490	exon16	c.C3268T	p.L1090L	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23510032	23510032	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024490	exon10	c.C2226T	p.F742F	.	.	.
OCA2	4948	broad.mit.edu	36	15	25941255	25941255	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000275	exon6	c.G633A	p.P211P	.	.	.
TJP1	7082	broad.mit.edu	36	15	27806304	27806304	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175610	exon17	c.C2284T	p.R762C	.	.	.
TJP1	7082	broad.mit.edu	36	15	27822272	27822272	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175610	exon9	c.G1016A	p.R339Q	.	.	.
FAN1	22909	broad.mit.edu	36	15	28984531	28984531	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146095	exon2	c.A373G	p.I125V	.	.	.
MTMR10	54893	broad.mit.edu	36	15	29027952	29027952	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017762	exon13	c.G1222T	p.D408Y	.	.	.
ARHGAP11A	9824	broad.mit.edu	36	15	30716719	30716719	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014783	exon12	c.C2453A	p.S818Y	.	.	.
FMN1	342184	broad.mit.edu	36	15	31146734	31146734	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001103184	exon1	c.G644A	p.S215N	.	.	.
RYR3	6263	broad.mit.edu	36	15	31642405	31642405	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001036	exon11	c.G1048A	p.D350N	.	.	.
RYR3	6263	broad.mit.edu	36	15	31703386	31703386	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001036	exon20	c.C2444T	p.P815L	.	.	.
RYR3	6263	broad.mit.edu	36	15	31741752	31741752	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001036	exon35	c.G4729A	p.A1577T	.	.	.
RYR3	6263	broad.mit.edu	36	15	31802308	31802308	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001036	exon44	c.C6720A	p.L2240L	.	.	.
AQR	9716	broad.mit.edu	36	15	32999845	32999845	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014691	exon14	c.G1201T	p.E401X	.	.	.
FAM98B	283742	broad.mit.edu	36	15	36560935	36560935	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173611	exon7	c.G880A	p.A294T	.	.	.
EIF2AK4	440275	broad.mit.edu	36	15	38047212	38047212	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013703	exon9	c.C1393T	p.R465C	.	.	.
PAK6	56924	broad.mit.edu	36	15	38352904	38352904	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128629	exon7	c.C1556T	p.A519V	.	.	.
PLCB2	5330	broad.mit.edu	36	15	38370164	38370164	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004573	exon29	c.G3115A	p.D1039N	.	.	.
DISP2	85455	broad.mit.edu	36	15	38445193	38445193	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033510	exon7	c.C920A	p.S307Y	.	.	.
BAHD1	22893	broad.mit.edu	36	15	38544861	38544861	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014952	exon6	c.G2088T	p.Q696H	.	.	.
CASC5	57082	broad.mit.edu	36	15	38700469	38700469	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170589	exon11	c.T793G	p.F265V	.	.	.
CASC5	57082	broad.mit.edu	36	15	38700998	38700998	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170589	exon11	c.C1322A	p.S441Y	.	.	.
CASC5	57082	broad.mit.edu	36	15	38701789	38701789	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170589	exon11	c.C2113A	p.L705I	.	.	.
CASC5	57082	broad.mit.edu	36	15	38703048	38703048	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170589	exon11	c.C3372T	p.N1124N	.	.	.
INO80	54617	broad.mit.edu	36	15	39149121	39149121	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017553	exon14	c.C1721A	p.S574X	.	.	.
TTBK2	146057	broad.mit.edu	36	15	40825403	40825403	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173500	exon15	c.A3617G	p.Q1206R	.	.	.
UBR1	197131	broad.mit.edu	36	15	41040143	41040143	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174916	exon43	c.C4749T	p.T1583T	.	.	.
EPB42	2038	broad.mit.edu	36	15	41294755	41294755	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114134	exon3	c.G260A	p.R87Q	.	.	.
LCMT2	9836	broad.mit.edu	36	15	41408641	41408641	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014793	exon1	c.C1339A	p.L447I	.	.	.
TP53BP1	7158	broad.mit.edu	36	15	41489180	41489180	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005657	exon25	c.G5342A	p.R1781Q	.	.	.
TP53BP1	7158	broad.mit.edu	36	15	41571795	41571795	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005657	exon2	c.G156A	p.T52T	.	.	.
MAP1A	4130	broad.mit.edu	36	15	41603316	41603316	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002373	exon4	c.G2353A	p.E785K	.	.	.
SPG11	80208	broad.mit.edu	36	15	42674810	42674810	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025137	exon26	c.G4574T	p.R1525I	.	.	.
SPG11	80208	broad.mit.edu	36	15	42680074	42680074	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025137	exon21	c.A3569C	p.K1190T	.	.	.
SPG11	80208	broad.mit.edu	36	15	42713095	42713095	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025137	exon8	c.A1635C	p.V545V	.	.	.
DUOXA2	405753	broad.mit.edu	36	15	43195334	43195334	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207581	exon2	c.G193A	p.A65T	.	.	.
SEMA6D	80031	broad.mit.edu	36	15	45850865	45850865	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153616	exon17	c.G2588T	p.R863I	.	.	.
SLC12A1	6557	broad.mit.edu	36	15	46309892	46309892	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184832	exon7	c.C875T	p.S292L	.	.	.
SLC12A1	6557	broad.mit.edu	36	15	46349227	46349227	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184832	exon19	c.G2376T	p.E792D	.	.	.
CEP152	22995	broad.mit.edu	36	15	46818295	46818295	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001194998	exon27	c.G4576A	p.D1526N	.	.	.
CEP152	22995	broad.mit.edu	36	15	46835777	46835777	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001194998	exon20	c.G2960A	p.R987Q	.	.	.
C15orf33	196951	broad.mit.edu	36	15	47450883	47450883	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152647	exon12	c.G1018A	p.D340N	.	.	.
DTWD1	56986	broad.mit.edu	36	15	47714174	47714174	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144955	exon4	c.C558A	p.F186L	.	.	.
ATP8B4	79895	broad.mit.edu	36	15	48013615	48013615	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024837	exon15	c.C1344A	p.F448L	.	.	.
TRPM7	54822	broad.mit.edu	36	15	48671727	48671727	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017672	exon26	c.G3997T	p.D1333Y	.	.	.
GLDN	342035	broad.mit.edu	36	15	49484010	49484010	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181789	exon10	c.G1423A	p.A475T	.	.	.
DMXL2	23312	broad.mit.edu	36	15	49647983	49647983	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015263	exon3	c.G278T	p.R93I	.	.	.
MAPK6	5597	broad.mit.edu	36	15	50126049	50126049	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002748	exon2	c.G100T	p.V34F	.	.	.
MYO5A	4644	broad.mit.edu	36	15	50475856	50475856	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000259	exon11	c.A1350G	p.E450E	.	.	.
ARPP19	10776	broad.mit.edu	36	15	50636682	50636682	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006628	exon2	c.G75A	p.E25E	.	.	.
KIAA1370	56204	broad.mit.edu	36	15	50688450	50688450	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019600	exon6	c.T1953G	p.I651M	.	.	.
KIAA1370	56204	broad.mit.edu	36	15	50689067	50689067	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019600	exon6	c.C1336T	p.R446X	.	.	.
ONECUT1	3175	broad.mit.edu	36	15	50868429	50868429	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004498	exon1	c.C945T	p.F315F	.	.	.
WDR72	256764	broad.mit.edu	36	15	51695236	51695236	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182758	exon15	c.A2459C	p.N820T	.	.	.
WDR72	256764	broad.mit.edu	36	15	51785495	51785495	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182758	exon10	c.C1023A	p.F341L	.	.	.
CCPG1	9236	broad.mit.edu	36	15	53439064	53439064	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004748	exon8	c.C2199A	p.F733L	.	.	.
PYGO1	26108	broad.mit.edu	36	15	53626116	53626116	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015617	exon3	c.T657A	p.N219K	.	.	.
PYGO1	26108	broad.mit.edu	36	15	53626272	53626272	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015617	exon3	c.G501T	p.Q167H	.	.	.
NEDD4	4734	broad.mit.edu	36	15	54004147	54004147	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006154	exon5	c.G280A	p.E94K	.	.	.
TEX9	374618	broad.mit.edu	36	15	54474218	54474218	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198524	exon9	c.G722A	p.R241Q	.	.	.
TEX9	374618	broad.mit.edu	36	15	54491908	54491908	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198524	exon10	c.A945G	p.K315K	.	.	.
MNS1	55329	broad.mit.edu	36	15	54543583	54543583	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018365	exon2	c.G158A	p.R53H	.	.	.
ZNF280D	54816	broad.mit.edu	36	15	54745955	54745955	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017661	exon16	c.A1924G	p.T642A	.	.	.
TCF12	6938	broad.mit.edu	36	15	55311852	55311852	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207037	exon10	c.C757A	p.L253M	.	.	.
LIPC	3990	broad.mit.edu	36	15	56617928	56617928	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000236	exon2	c.C193T	p.R65X	.	.	.
SLTM	79811	broad.mit.edu	36	15	56959497	56959497	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024755	exon21	c.G3098A	p.R1033Q	.	.	.
ANXA2	302	broad.mit.edu	36	15	58436715	58436715	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002858	exon6	c.G424A	p.D142N	.	.	.
TLN2	83660	broad.mit.edu	36	15	60827932	60827932	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015059	exon30	c.C4116T	p.L1372L	.	.	.
APH1B	83464	broad.mit.edu	36	15	61385000	61385000	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031301	exon6	c.G741T	p.K247N	.	.	.
HERC1	8925	broad.mit.edu	36	15	61748879	61748879	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003922	exon40	c.C8117A	p.S2706X	.	.	.
HERC1	8925	broad.mit.edu	36	15	61778120	61778120	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003922	exon26	c.C4765A	p.H1589N	.	.	.
HERC1	8925	broad.mit.edu	36	15	61854389	61854389	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003922	exon2	c.C487T	p.R163X	.	.	.
ANKDD1A	348094	broad.mit.edu	36	15	63029209	63029209	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182703	exon14	c.C1446T	p.F482F	.	.	.
DPP8	54878	broad.mit.edu	36	15	63580145	63580145	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017743	exon4	c.C398A	p.S133Y	.	.	.
PTPLAD1	51495	broad.mit.edu	36	15	63655705	63655705	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016395	exon11	c.A1024C	p.N342H	.	.	.
SLC24A1	9187	broad.mit.edu	36	15	63723821	63723821	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004727	exon5	c.C2057T	p.S686L	.	.	.
MEGF11	84465	broad.mit.edu	36	15	64050025	64050025	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032445	exon8	c.G819T	p.Q273H	.	.	.
LCTL	197021	broad.mit.edu	36	15	64632617	64632617	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207338	exon9	c.C956T	p.S319L	.	.	.
MAP2K5	5607	broad.mit.edu	36	15	65622809	65622809	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145160	exon1	c.G82A	p.A28T	.	.	.
PIAS1	8554	broad.mit.edu	36	15	66255976	66255976	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016166	exon11	c.G1411T	p.E471X	.	.	.
ITGA11	22801	broad.mit.edu	36	15	66430750	66430750	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004439	exon8	c.T794G	p.V265G	.	.	.
SPESP1	246777	broad.mit.edu	36	15	67025844	67025844	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145658	exon2	c.C917T	p.S306F	.	.	.
LRRC49	54839	broad.mit.edu	36	15	68975270	68975270	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017691	exon3	c.C134T	p.S45L	.	.	.
THSD4	79875	broad.mit.edu	36	15	69824611	69824611	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024817	exon11	c.C2019A	p.I673I	.	.	.
MYO9A	4649	broad.mit.edu	36	15	69930693	69930693	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006901	exon37	c.G6536A	p.R2179Q	.	.	.
MYO9A	4649	broad.mit.edu	36	15	69977092	69977092	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006901	exon25	c.C4806T	p.T1602T	.	.	.
C15orf60	283677	broad.mit.edu	36	15	71522586	71522586	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042367	exon1	c.G7A	p.E3K	.	.	.
ISLR	3671	broad.mit.edu	36	15	72254799	72254799	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201526	exon2	c.G547A	p.D183N	 ISLR,large_intestine,colon,Substitution - Missense,0 	.	.
STRA6	64220	broad.mit.edu	36	15	72281657	72281657	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199041	exon2	c.C50T	p.S17L	.	.	.
CYP11A1	1583	broad.mit.edu	36	15	72422515	72422515	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000781	exon5	c.G846T	p.Q282H	.	.	.
CYP1A1	1543	broad.mit.edu	36	15	72802378	72802378	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000499	exon2	c.G114T	p.K38N	.	.	.
UBE2Q2	92912	broad.mit.edu	36	15	73939278	73939278	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145335	exon3	c.G239A	p.R80H	.	.	.
MORF4L1	10933	broad.mit.edu	36	15	76970398	76970398	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006791	exon6	c.G336T	p.K112N	.	.	.
RASGRF1	5923	broad.mit.edu	36	15	77081100	77081100	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002891	exon17	c.C2582A	p.S861Y	.	.	.
KIAA1199	57214	broad.mit.edu	36	15	78963635	78963635	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018689	exon6	c.G682A	p.D228N	.	.	.
CPEB1	64506	broad.mit.edu	36	15	81019701	81019701	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079535	exon4	c.C730T	p.P244S	.	.	.
AP3B2	8120	broad.mit.edu	36	15	81127983	81127983	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004644	exon23	c.C2852T	p.S951F	.	.	.
TM6SF1	53346	broad.mit.edu	36	15	81582528	81582528	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023003	exon6	c.G497A	p.R166Q	.	.	.
BNC1	646	broad.mit.edu	36	15	81717844	81717844	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001717	exon5	c.G2339A	p.S780N	.	.	.
BNC1	646	broad.mit.edu	36	15	81724078	81724078	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001717	exon4	c.C929G	p.A310G	.	.	.
SH3GL3	6457	broad.mit.edu	36	15	82019063	82019063	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003027	exon2	c.C100A	p.L34I	.	.	.
ADAMTSL3	57188	broad.mit.edu	36	15	82344898	82344898	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207517	exon10	c.C1002A	p.F334L	.	.	.
ADAMTSL3	57188	broad.mit.edu	36	15	82450921	82450921	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207517	exon23	c.C3924T	p.I1308I	.	.	.
AGBL1	123624	broad.mit.edu	36	15	84608506	84608506	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152336	exon10	c.A962C	p.K321T	.	.	.
AGBL1	123624	broad.mit.edu	36	15	84608813	84608813	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152336	exon10	c.C1269T	p.D423D	.	.	.
NTRK3	4916	broad.mit.edu	36	15	86273465	86273465	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002530	exon16	c.C2094T	p.F698F	.	.	.
RLBP1	6017	broad.mit.edu	36	15	87554633	87554633	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000326	exon9	c.G841A	p.D281N	.	.	.
POLG	5428	broad.mit.edu	36	15	87663491	87663491	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126131	exon19	c.C3076T	p.R1026C	.	.	.
C15orf42	90381	broad.mit.edu	36	15	87953052	87953052	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152259	exon15	c.C2737T	p.R913X	.	.	.
ANPEP	290	broad.mit.edu	36	15	88141835	88141835	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001150	exon15	c.G2132A	p.R711H	.	.	.
IQGAP1	8826	broad.mit.edu	36	15	88798716	88798716	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003870	exon14	c.G1540T	p.E514X	.	.	.
BLM	641	broad.mit.edu	36	15	89153374	89153374	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000057	exon20	c.C3755T	p.S1252F	.	.	.
MAN2A2	4122	broad.mit.edu	36	15	89263973	89263973	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006122	exon22	c.C3405A	p.V1135V	.	.	.
MCTP2	55784	broad.mit.edu	36	15	92744155	92744155	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159643	exon15	c.T1892C	p.V631A	.	.	.
MCTP2	55784	broad.mit.edu	36	15	92820956	92820956	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159643	exon19	c.G2333A	p.R778Q	.	.	.
MCTP2	55784	broad.mit.edu	36	15	92823244	92823244	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159643	exon20	c.C2449T	p.R817W	.	.	.
FAM169B	283777	broad.mit.edu	36	15	96800467	96800467	+	Missense_Mutation	SNP	C	A	A	rs34036460	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182562	exon7	c.G495T	p.K165N	.	.	.
SYNM	23336	broad.mit.edu	36	15	97484466	97484466	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015286	exon3	c.G951T	p.E317D	.	.	.
LASS3	204219	broad.mit.edu	36	15	98830704	98830704	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178842	exon10	c.G686A	p.R229H	.	.	.
ALDH1A3	220	broad.mit.edu	36	15	99250268	99250268	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000693	exon4	c.T376A	p.F126I	.	.	.
PCSK6	5046	broad.mit.edu	36	15	99756259	99756259	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138322	exon7	c.A867C	p.K289N	.	.	.
TEKT5	146279	broad.mit.edu	36	16	10696178	10696178	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144674	exon1	c.C54T	p.C18C	.	.	.
ERCC4	2072	broad.mit.edu	36	16	13936573	13936573	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005236	exon8	c.C1283T	p.A428V	.	.	.
PARN	5073	broad.mit.edu	36	16	14438120	14438120	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002582	exon24	c.G1875A	p.S625S	.	.	.
PARN	5073	broad.mit.edu	36	16	14484109	14484109	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002582	exon22	c.G1557T	p.E519D	.	.	.
C16orf45	89927	broad.mit.edu	36	16	15569371	15569371	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142469	exon3	c.C210A	p.I70I	.	.	.
MYH11	4629	broad.mit.edu	36	16	15741469	15741469	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040114	exon24	c.G2958T	p.K986N	.	.	.
MYH11	4629	broad.mit.edu	36	16	15788065	15788065	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040114	exon5	c.G556A	p.E186K	.	.	.
XYLT1	64131	broad.mit.edu	36	16	17260689	17260689	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022166	exon3	c.G570T	p.K190N	.	.	.
C16orf73	254528	broad.mit.edu	36	16	1834876	1834876	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152764	exon10	c.G868T	p.E290X	.	.	.
SMG1	23049	broad.mit.edu	36	16	18815662	18815662	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015092	exon2	c.G210A	p.R70R	.	.	.
GP2	2813	broad.mit.edu	36	16	20243052	20243052	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001502	exon3	c.C122T	p.S41L	.	.	.
PDILT	204474	broad.mit.edu	36	16	20288399	20288399	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174924	exon8	c.C1032T	p.D344D	.	.	.
LOC81691	81691	broad.mit.edu	36	16	20725844	20725844	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199053	exon2	c.A68C	p.N23T	.	.	.
DNAH3	55567	broad.mit.edu	36	16	20882360	20882360	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017539	exon53	c.C10347A	p.I3449I	.	.	.
DNAH3	55567	broad.mit.edu	36	16	20894220	20894220	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017539	exon51	c.G8095T	p.E2699X	.	.	.
DNAH3	55567	broad.mit.edu	36	16	21059387	21059387	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017539	exon5	c.G667T	p.E223X	.	.	.
ZP2	7783	broad.mit.edu	36	16	21124374	21124374	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003460	exon7	c.G561T	p.E187D	.	.	.
POLR3E	55718	broad.mit.edu	36	16	22243415	22243415	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018119	exon16	c.G1219A	p.E407K	.	.	.
ABCA3	21	broad.mit.edu	36	16	2298524	2298524	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001089	exon11	c.C1213A	p.L405I	.	.	.
USP31	57478	broad.mit.edu	36	16	22988150	22988150	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020718	exon16	c.G2777T	p.S926I	.	.	.
ERN2	10595	broad.mit.edu	36	16	23625193	23625193	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033266	exon7	c.G692A	p.R231H	.	.	.
ITFG3	83986	broad.mit.edu	36	16	244475	244475	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032039	exon3	c.C62T	p.S21L	.	.	.
RBBP6	5930	broad.mit.edu	36	16	24490885	24490885	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018703	exon17	c.A4895C	p.K1632T	.	.	.
ZKSCAN2	342357	broad.mit.edu	36	16	25165805	25165805	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012981	exon5	c.C1213T	p.R405X	.	.	.
KIAA0556	23247	broad.mit.edu	36	16	27673056	27673056	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015202	exon18	c.G3614A	p.G1205D	.	.	.
DOC2A	8448	broad.mit.edu	36	16	29926117	29926117	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003586	exon6	c.G532A	p.A178T	.	.	.
SEPHS2	22928	broad.mit.edu	36	16	30363288	30363288	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012248	exon1	c.G1262A	p.R421Q	.	.	.
ITGAL	3683	broad.mit.edu	36	16	30408172	30408172	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114380	exon9	c.G928T	p.E310X	.	.	.
ITGAM	3684	broad.mit.edu	36	16	31248092	31248092	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000632	exon24	c.G2835T	p.E945D	.	.	.
ITGAD	3681	broad.mit.edu	36	16	31330298	31330298	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005353	exon14	c.C1666A	p.H556N	.	.	.
ARMC5	79798	broad.mit.edu	36	16	31380813	31380813	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105247	exon2	c.C545T	p.A182V	.	.	.
ZNF267	10308	broad.mit.edu	36	16	31833691	31833691	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003414	exon4	c.G620A	p.R207Q	.	.	.
OR1F1	4992	broad.mit.edu	36	16	3194833	3194833	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012360	exon1	c.G586T	p.E196X	.	.	.
MEFV	4210	broad.mit.edu	36	16	3244657	3244657	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000243	exon2	c.G412A	p.G138R	.	.	.
ZNF434	54925	broad.mit.edu	36	16	3372864	3372864	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017810	exon6	c.G1447T	p.D483Y	.	.	.
ZNF597	146434	broad.mit.edu	36	16	3426863	3426863	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152457	exon4	c.G837A	p.E279E	.	.	.
CLUAP1	23059	broad.mit.edu	36	16	3509988	3509988	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024793	exon3	c.T166G	p.L56V	.	.	.
ADCY9	115	broad.mit.edu	36	16	4103815	4103815	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001116	exon2	c.G1630A	p.E544K	.	.	.
HMOX2	3163	broad.mit.edu	36	16	4495577	4495577	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002134	exon2	c.G51T	p.K17N	.	.	.
ABCC11	85320	broad.mit.edu	36	16	46791831	46791831	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145186	exon15	c.G1939A	p.A647T	.	.	.
N4BP1	9683	broad.mit.edu	36	16	47152265	47152265	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153029	exon2	c.G1790A	p.R597Q	.	.	.
C16orf71	146562	broad.mit.edu	36	16	4733055	4733055	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139170	exon5	c.C794T	p.A265V	.	.	.
SNX20	124460	broad.mit.edu	36	16	49265408	49265408	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182854	exon4	c.G361A	p.A121T	.	.	.
NOD2	64127	broad.mit.edu	36	16	49302444	49302444	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022162	exon4	c.T1121C	p.V374A	.	.	.
NOD2	64127	broad.mit.edu	36	16	49303519	49303519	+	Silent	SNP	C	T	T	rs6413461	byFrequency	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022162	exon4	c.C2196T	p.S732S	.	.	.
SALL1	6299	broad.mit.edu	36	16	49730680	49730680	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002968	exon2	c.C2954A	p.S985Y	.	.	.
SALL1	6299	broad.mit.edu	36	16	49731306	49731306	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002968	exon2	c.G2328A	p.T776T	.	.	.
SALL1	6299	broad.mit.edu	36	16	49731420	49731420	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002968	exon2	c.C2214A	p.I738I	.	.	.
SALL1	6299	broad.mit.edu	36	16	49733415	49733415	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002968	exon2	c.C219T	p.I73I	.	.	.
CHD9	80205	broad.mit.edu	36	16	51818811	51818811	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025134	exon6	c.G2046A	p.E682E	.	.	.
CHD9	80205	broad.mit.edu	36	16	51888528	51888528	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025134	exon30	c.C5670A	p.F1890L	.	.	.
CHD9	80205	broad.mit.edu	36	16	51906240	51906240	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025134	exon36	c.C7319A	p.S2440Y	.	.	.
CHD9	80205	broad.mit.edu	36	16	51915784	51915784	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025134	exon39	c.C8122A	p.L2708M	.	.	.
RBL2	5934	broad.mit.edu	36	16	52053200	52053200	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005611	exon10	c.G1393T	p.E465X	.	.	.
LPCAT2	54947	broad.mit.edu	36	16	54123347	54123347	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017839	exon5	c.T663C	p.G221G	.	.	.
CES5A	221223	broad.mit.edu	36	16	54438072	54438072	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143685	exon13	c.C1520A	p.S507Y	.	.	.
CES5A	221223	broad.mit.edu	36	16	54454848	54454848	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143685	exon6	c.C723A	p.A241A	.	.	.
MT3	4504	broad.mit.edu	36	16	55182274	55182274	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005954	exon3	c.C119T	p.A40V	.	.	.
CNGB1	1258	broad.mit.edu	36	16	56552287	56552287	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135639	exon8	c.G492T	p.Q164H	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57123661	57123661	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016284	exon41	c.A6035C	p.N2012T	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57172130	57172130	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206999	exon12	c.G1251T	p.E417D	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57179224	57179224	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206999	exon4	c.G270A	p.T90T	.	.	.
CDH8	1006	broad.mit.edu	36	16	60318547	60318547	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001796	exon9	c.C1488T	p.F496F	.	.	.
CDH8	1006	broad.mit.edu	36	16	60380796	60380796	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001796	exon8	c.G1369T	p.E457X	.	.	.
CDH11	1009	broad.mit.edu	36	16	63564334	63564334	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001797	exon9	c.A1364G	p.N455S	.	.	.
TRADD	8717	broad.mit.edu	36	16	65747996	65747996	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003789	exon2	c.G69T	p.L23L	.	.	.
ZDHHC1	29800	broad.mit.edu	36	16	65990251	65990251	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013304	exon6	c.C628T	p.R210C	.	.	.
FAM65A	79567	broad.mit.edu	36	16	66137203	66137203	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193522	exon19	c.T3338C	p.V1113A	.	.	.
RANBP10	57610	broad.mit.edu	36	16	66397747	66397747	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020850	exon1	c.A194G	p.Y65C	.	.	.
CIRH1A	84916	broad.mit.edu	36	16	67745855	67745855	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032830	exon10	c.G1158T	p.K386N	.	.	.
AARS	16	broad.mit.edu	36	16	68844250	68844250	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001605	exon21	c.G2782A	p.D928N	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69409861	69409861	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon84	c.C14540T	p.A4847V	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69475400	69475400	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon59	c.C9900T	p.I3300I	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69500144	69500144	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon48	c.C8123A	p.S2708Y	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69527375	69527375	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon45	c.C7136A	p.S2379Y	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69543941	69543941	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon41	c.G6412T	p.E2138X	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69583480	69583480	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon24	c.T3779G	p.F1260C	.	.	.
ZNF19	7567	broad.mit.edu	36	16	70067409	70067409	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006961	exon6	c.G542A	p.R181K	.	.	.
TAT	6898	broad.mit.edu	36	16	70167358	70167358	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000353	exon3	c.C308T	p.S103L	.	.	.
PHLPP2	23035	broad.mit.edu	36	16	70244260	70244260	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015020	exon17	c.C2751A	p.V917V	.	.	.
PHLPP2	23035	broad.mit.edu	36	16	70270870	70270870	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015020	exon6	c.G960T	p.E320D	.	.	.
TXNL4B	54957	broad.mit.edu	36	16	70678126	70678126	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142317	exon4	c.C361T	p.R121X	.	.	.
ZFHX3	463	broad.mit.edu	36	16	71385031	71385031	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006885	exon9	c.G9051A	p.T3017T	.	.	.
PSMD7	5713	broad.mit.edu	36	16	72896892	72896892	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002811	exon7	c.C735T	p.F245F	.	.	.
GLG1	2734	broad.mit.edu	36	16	73049301	73049301	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145666	exon23	c.C3204T	p.C1068C	.	.	.
ZFP1	162239	broad.mit.edu	36	16	73761204	73761204	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153688	exon4	c.G695T	p.R232I	.	.	.
KARS	3735	broad.mit.edu	36	16	74227448	74227448	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130089	exon6	c.C616T	p.R206W	.	.	.
CNTNAP4	85445	broad.mit.edu	36	16	75113551	75113551	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033401	exon17	c.A2650G	p.T884A	.	.	.
ADAMTS18	170692	broad.mit.edu	36	16	75953613	75953613	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199355	exon7	c.G1106A	p.C369Y	.	.	.
VAT1L	57687	broad.mit.edu	36	16	76467771	76467771	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020927	exon5	c.C726A	p.I242I	.	.	.
MPHOSPH6	10200	broad.mit.edu	36	16	80742548	80742548	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005792	exon3	c.A237G	p.G79G	.	.	.
SLC38A8	146167	broad.mit.edu	36	16	82608344	82608344	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080442	exon7	c.G855T	p.L285F	.	.	.
LRRC50	123872	broad.mit.edu	36	16	82745730	82745730	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178452	exon4	c.C400A	p.L134I	.	.	.
FBXO31	79791	broad.mit.edu	36	16	85925339	85925339	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024735	exon8	c.C1051T	p.R351W	.	.	.
ZC3H18	124245	broad.mit.edu	36	16	87193814	87193814	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144604	exon6	c.C1045T	p.R349X	.	.	.
GALNS	2588	broad.mit.edu	36	16	87412032	87412032	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000512	exon13	c.T1366G	p.F456V	.	.	.
ANKRD11	29123	broad.mit.edu	36	16	87879952	87879952	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013275	exon8	c.G888A	p.S296S	.	.	.
C16orf3	750	broad.mit.edu	36	16	88622986	88622986	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001214	exon1	c.C266T	p.T89M	.	.	.
GAS8	2622	broad.mit.edu	36	16	88631164	88631164	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001481	exon7	c.G780T	p.K260N	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	9892444	9892444	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134408	exon4	c.T1022C	p.V341A	.	.	.
MYH8	4626	broad.mit.edu	36	17	10245216	10245216	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002472	exon25	c.A3126C	p.E1042D	.	.	.
MYH8	4626	broad.mit.edu	36	17	10250373	10250373	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002472	exon20	c.G2238T	p.E746D	.	.	.
MYH1	4619	broad.mit.edu	36	17	10356797	10356797	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005963	exon11	c.G934A	p.D312N	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11480769	11480769	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001372	exon9	c.G1729T	p.D577Y	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11496810	11496810	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001372	exon14	c.C2361T	p.C787C	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11524767	11524767	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001372	exon19	c.G3579A	p.E1193E	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11537934	11537934	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001372	exon21	c.G4639A	p.D1547N	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11628431	11628431	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001372	exon41	c.C7911T	p.L2637L	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11727674	11727674	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001372	exon56	c.C10853T	p.T3618M	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11806037	11806037	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004662	exon14	c.C1908A	p.L636L	.	.	.
ZNF18	7566	broad.mit.edu	36	17	11822761	11822761	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144680	exon9	c.G888T	p.E296D	.	.	.
TEKT3	64518	broad.mit.edu	36	17	15172092	15172092	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031898	exon4	c.G605A	p.R202Q	.	.	.
CDRT1	374286	broad.mit.edu	36	17	15433205	15433205	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006382	exon12	c.G2068A	p.E690K	.	.	.
TRIM16	10626	broad.mit.edu	36	17	15451714	15451714	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006382	exon6	c.C1131T	p.Y377Y	.	.	.
NCOR1	9611	broad.mit.edu	36	17	15914220	15914220	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190440	exon30	c.G4545T	p.M1515I	.	.	.
ZNF287	57336	broad.mit.edu	36	17	16396509	16396509	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020653	exon6	c.C1672A	p.H558N	.	.	.
CCDC144A	9720	broad.mit.edu	36	17	16553490	16553490	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014695	exon5	c.A1394G	p.N465S	.	.	.
CCDC144A	9720	broad.mit.edu	36	17	16579468	16579468	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014695	exon12	c.G3158A	p.R1053Q	.	.	.
TNFRSF13B	23495	broad.mit.edu	36	17	16784476	16784476	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012452	exon4	c.G520A	p.V174I	.	.	.
MED9	55090	broad.mit.edu	36	17	17335517	17335517	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018019	exon2	c.G424A	p.E142K	.	.	.
MYO15A	51168	broad.mit.edu	36	17	18001263	18001263	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016239	exon49	c.G8782A	p.D2928N	.	.	.
FBXW10	10517	broad.mit.edu	36	17	18588468	18588468	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031456	exon1	c.G186T	p.K62N	.	.	.
PRPSAP2	5636	broad.mit.edu	36	17	18768019	18768019	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002767	exon10	c.C801T	p.I267I	.	.	.
SLC5A10	125206	broad.mit.edu	36	17	18804588	18804588	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152351	exon5	c.C351T	p.I117I	.	.	.
RNF112	7732	broad.mit.edu	36	17	19258721	19258721	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007148	exon10	c.A1054C	p.S352R	.	.	.
SLC47A1	55244	broad.mit.edu	36	17	19377926	19377926	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018242	exon1	c.C82A	p.L28M	.	.	.
SLC47A1	55244	broad.mit.edu	36	17	19411034	19411034	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018242	exon14	c.A1210C	p.N404H	.	.	.
MAP2K3	5606	broad.mit.edu	36	17	21157413	21157413	+	Missense_Mutation	SNP	G	T	T	rs55740804	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002756	exon11	c.G844T	p.A282S	.	.	.
SMG6	23293	broad.mit.edu	36	17	2150396	2150396	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170957	exon2	c.T308A	p.I103N	.	.	.
SGSM2	9905	broad.mit.edu	36	17	2214640	2214640	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098509	exon9	c.C933T	p.S311S	.	.	.
METT10D	79066	broad.mit.edu	36	17	2314381	2314381	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024086	exon6	c.G599A	p.R200Q	.	.	.
SARM1	23098	broad.mit.edu	36	17	23747107	23747107	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015077	exon8	c.C1978T	p.R660X	.	.	.
PIPOX	51268	broad.mit.edu	36	17	24404703	24404703	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016518	exon4	c.G624T	p.Q208H	.	.	.
GIT1	28964	broad.mit.edu	36	17	24929910	24929910	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014030	exon8	c.G775A	p.E259K	.	.	.
CORO6	84940	broad.mit.edu	36	17	24969964	24969964	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032854	exon4	c.C603A	p.I201I	.	.	.
PAFAH1B1	5048	broad.mit.edu	36	17	2520238	2520238	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000430	exon6	c.G431A	p.R144Q	.	.	.
OMG	4974	broad.mit.edu	36	17	26646871	26646871	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002544	exon2	c.A605C	p.K202T	.	.	.
C17orf79	55352	broad.mit.edu	36	17	27203994	27203994	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018405	exon3	c.T335A	p.F112Y	.	.	.
OR1G1	8390	broad.mit.edu	36	17	2977394	2977394	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003555	exon1	c.C202A	p.L68I	.	.	.
NLE1	54475	broad.mit.edu	36	17	30491005	30491005	+	De_novo_Start_OutOfFrame	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018096	exon3	c.C356A	p.S119Y	.	.	.
OR1A1	8383	broad.mit.edu	36	17	3065999	3065999	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014565	exon1	c.G335A	p.S112N	.	.	.
SLFN11	91607	broad.mit.edu	36	17	30703861	30703861	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001104589	exon6	c.G2333A	p.R778Q	.	.	.
SLFN11	91607	broad.mit.edu	36	17	30714465	30714465	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001104589	exon3	c.A475C	p.K159Q	.	.	.
SLFN13	146857	broad.mit.edu	36	17	30792173	30792173	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144682	exon6	c.G2248T	p.E750X	.	.	.
SLFN13	146857	broad.mit.edu	36	17	30796348	30796348	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144682	exon3	c.G465T	p.K155N	.	.	.
PEX12	5193	broad.mit.edu	36	17	30927181	30927181	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000286	exon3	c.A813C	p.E271D	.	.	.
CCL4	6351	broad.mit.edu	36	17	31455474	31455474	+	Silent	SNP	G	A	A	rs1130755	byCluster	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002984	exon1	c.G63A	p.A21A	.	.	.
PIGW	284098	broad.mit.edu	36	17	31968301	31968301	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178517	exon2	c.T1238G	p.L413R	.	.	.
ACACA	31	broad.mit.edu	36	17	32705235	32705235	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198834	exon9	c.G970T	p.E324X	.	.	.
OR3A3	8392	broad.mit.edu	36	17	3271477	3271477	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012373	exon1	c.T866C	p.V289A	.	.	.
ACACA	31	broad.mit.edu	36	17	32715904	32715904	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198834	exon4	c.C419T	p.A140V	.	.	.
DDX52	11056	broad.mit.edu	36	17	33055559	33055559	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007010	exon10	c.A1347G	p.Q449Q	.	.	.
ASPA	443	broad.mit.edu	36	17	3339348	3339348	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000049	exon4	c.T596G	p.I199S	.	.	.
GPR179	440435	broad.mit.edu	36	17	33737052	33737052	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004334	exon11	c.C5926T	p.R1976C	.	.	.
GPR179	440435	broad.mit.edu	36	17	33739682	33739682	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004334	exon11	c.G3296A	p.S1099N	.	.	.
SRCIN1	80725	broad.mit.edu	36	17	33961829	33961829	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025248	exon14	c.C2546T	p.T849M	.	.	.
CWC25	54883	broad.mit.edu	36	17	34212511	34212511	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017748	exon9	c.G1131A	p.E377E	.	.	.
ERBB2	2064	broad.mit.edu	36	17	35125601	35125601	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005862	exon15	c.G1306A	p.A436T	.	.	.
ITGAE	3682	broad.mit.edu	36	17	3570436	3570436	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002208	exon29	c.G3247T	p.D1083Y	.	.	.
CCR7	1236	broad.mit.edu	36	17	35965447	35965447	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001838	exon3	c.C210T	p.F70F	.	.	.
ITGAE	3682	broad.mit.edu	36	17	3611182	3611182	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002208	exon6	c.G472T	p.D158Y	.	.	.
KRT26	353288	broad.mit.edu	36	17	36178766	36178766	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181539	exon6	c.C1078T	p.R360X	.	.	.
KRT23	25984	broad.mit.edu	36	17	36335200	36335200	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015515	exon7	c.G1074T	p.L358L	.	.	.
KRT32	3882	broad.mit.edu	36	17	36875934	36875934	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002278	exon2	c.G489T	p.E163D	.	.	.
KRT35	3886	broad.mit.edu	36	17	36889504	36889504	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002280	exon2	c.A527C	p.K176T	.	.	.
KRT9	3857	broad.mit.edu	36	17	36977061	36977061	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000226	exon7	c.C1862A	p.S621Y	.	.	.
KRT16	3868	broad.mit.edu	36	17	37019783	37019783	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005557	exon8	c.C1352T	p.S451L	.	.	.
NT5C3L	115024	broad.mit.edu	36	17	37238642	37238642	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052935	exon7	c.G493T	p.E165X	.	.	.
KLHL10	317719	broad.mit.edu	36	17	37247731	37247731	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152467	exon1	c.G21T	p.A7A	.	.	.
AOC3	8639	broad.mit.edu	36	17	38258222	38258222	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003734	exon1	c.G1336T	p.D446Y	.	.	.
G6PC	2538	broad.mit.edu	36	17	38306552	38306552	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000151	exon1	c.G133A	p.V45I	.	.	.
BRCA1	672	broad.mit.edu	36	17	38469451	38469451	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007294	exon17	c.A5118G	p.G1706G	.	.	.
BRCA1	672	broad.mit.edu	36	17	38498355	38498355	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007294	exon10	c.G2719A	p.E907K	.	.	.
GPATCH8	23131	broad.mit.edu	36	17	39867963	39867963	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002909	exon5	c.A344G	p.Y115C	.	.	.
C17orf104	284071	broad.mit.edu	36	17	40100279	40100279	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145080	exon5	c.C1474T	p.R492X	.	.	.
GJC1	10052	broad.mit.edu	36	17	40238576	40238576	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005497	exon3	c.G136A	p.D46N	.	.	.
GOSR2	9570	broad.mit.edu	36	17	42364476	42364476	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012511	exon4	c.C248T	p.A83V	.	.	.
C17orf57	124989	broad.mit.edu	36	17	42826418	42826418	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152347	exon16	c.C1755A	p.F585L	.	.	.
MYBBP1A	10514	broad.mit.edu	36	17	4389924	4389924	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014520	exon26	c.C3522A	p.F1174L	.	.	.
MYBBP1A	10514	broad.mit.edu	36	17	4404242	4404242	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014520	exon3	c.G375T	p.K125N	.	.	.
IGF2BP1	10642	broad.mit.edu	36	17	44470722	44470722	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006546	exon6	c.C595T	p.R199W	.	.	.
IGF2BP1	10642	broad.mit.edu	36	17	44474703	44474703	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160423	exon7	c.C625T	p.R209W	.	.	.
MYST2	11143	broad.mit.edu	36	17	45241496	45241496	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199156	exon4	c.G263A	p.R88Q	.	.	.
TAC4	255061	broad.mit.edu	36	17	45272228	45272228	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077503	exon3	c.G242T	p.R81I	.	.	.
ITGA3	3675	broad.mit.edu	36	17	45520109	45520109	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002204	exon24	c.C2922A	p.F974L	.	.	.
EME1	146956	broad.mit.edu	36	17	45807858	45807858	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166131	exon2	c.C290T	p.A97V	.	.	.
CACNA1G	8913	broad.mit.edu	36	17	46038262	46038262	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198382	exon22	c.T4232C	p.F1411S	.	.	.
CACNA1G	8913	broad.mit.edu	36	17	46038534	46038534	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198397	exon23	c.G4573A	p.A1525T	.	.	.
CACNA1G	8913	broad.mit.edu	36	17	46048638	46048638	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198382	exon27	c.C4846A	p.L1616M	.	.	.
CHRNE	1145	broad.mit.edu	36	17	4746018	4746018	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000080	exon5	c.C488T	p.S163L	.	.	.
ZFP3	124961	broad.mit.edu	36	17	4936341	4936341	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153018	exon2	c.G818T	p.R273I	.	.	.
ZNF594	84622	broad.mit.edu	36	17	5027500	5027500	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032530	exon2	c.G776T	p.R259I	.	.	.
RABEP1	9135	broad.mit.edu	36	17	5209189	5209189	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083585	exon11	c.A1717G	p.K573E	.	.	.
DGKE	8526	broad.mit.edu	36	17	52267487	52267487	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003647	exon2	c.T332G	p.I111S	.	.	.
EPX	8288	broad.mit.edu	36	17	53626380	53626380	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000502	exon5	c.G522T	p.E174D	.	.	.
MPO	4353	broad.mit.edu	36	17	53705146	53705146	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000250	exon10	c.C1754A	p.A585D	.	.	.
BZRAP1	9256	broad.mit.edu	36	17	53741062	53741062	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004758	exon22	c.G4570T	p.D1524Y	.	.	.
HSF5	124535	broad.mit.edu	36	17	53912354	53912354	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080439	exon2	c.C824A	p.S275Y	.	.	.
TEX14	56155	broad.mit.edu	36	17	54004327	54004327	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198393	exon25	c.C3791A	p.S1264Y	.	.	.
NLRP1	22861	broad.mit.edu	36	17	5402554	5402554	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033007	exon4	c.C2186T	p.T729M	.	.	.
NLRP1	22861	broad.mit.edu	36	17	5426045	5426045	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033007	exon3	c.C510T	p.S170S	.	.	.
PPM1E	22843	broad.mit.edu	36	17	54412421	54412421	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014906	exon7	c.G1515T	p.E505D	.	.	.
PPM1E	22843	broad.mit.edu	36	17	54412521	54412521	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014906	exon7	c.G1615A	p.D539N	.	.	.
DHX40	79665	broad.mit.edu	36	17	55031535	55031535	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024612	exon14	c.G1715T	p.W572L	.	.	.
DHX40	79665	broad.mit.edu	36	17	55034717	55034717	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024612	exon15	c.G1859A	p.R620Q	.	.	.
RPS6KB1	6198	broad.mit.edu	36	17	55378755	55378755	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003161	exon15	c.C1402A	p.P468T	.	.	.
USP32	84669	broad.mit.edu	36	17	55643158	55643158	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032582	exon21	c.C2422T	p.R808W	.	.	.
BCAS3	54828	broad.mit.edu	36	17	56300807	56300807	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099432	exon8	c.G565T	p.D189Y	.	.	.
BRIP1	83990	broad.mit.edu	36	17	57115803	57115803	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032043	exon20	c.C3386A	p.S1129Y	.	.	.
BRIP1	83990	broad.mit.edu	36	17	57148193	57148193	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032043	exon17	c.G2393A	p.R798Q	.	.	.
TLK2	11011	broad.mit.edu	36	17	58011222	58011222	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006852	exon15	c.G1305A	p.T435T	.	.	.
MRC2	9902	broad.mit.edu	36	17	58095767	58095767	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006039	exon2	c.G245A	p.R82Q	.	.	.
MARCH10	162333	broad.mit.edu	36	17	58167604	58167604	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100875	exon6	c.T1357A	p.Y453N	.	.	.
DDX42	11325	broad.mit.edu	36	17	59248801	59248801	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203499	exon18	c.C2128A	p.H710N	.	.	.
WSCD1	23302	broad.mit.edu	36	17	5932065	5932065	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015253	exon3	c.C459T	p.G153G	.	.	.
SCN4A	6329	broad.mit.edu	36	17	59395740	59395740	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000334	exon9	c.G1272T	p.M424I	.	.	.
SCN4A	6329	broad.mit.edu	36	17	59403882	59403882	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000334	exon1	c.C52T	p.R18C	.	.	.
C17orf60	284021	broad.mit.edu	36	17	59892042	59892042	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085423	exon6	c.G776T	p.R259I	.	.	.
CCDC45	90799	broad.mit.edu	36	17	59961235	59961235	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138363	exon17	c.T1988A	p.I663N	.	.	.
HELZ	9931	broad.mit.edu	36	17	62549561	62549561	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014877	exon26	c.C3617T	p.S1206L	.	.	.
PITPNM3	83394	broad.mit.edu	36	17	6305483	6305483	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031220	exon18	c.C2424A	p.F808L	.	.	.
RNMTL1	55178	broad.mit.edu	36	17	632515	632515	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018146	exon1	c.A147G	p.E49E	.	.	.
BPTF	2186	broad.mit.edu	36	17	63374741	63374741	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182641	exon23	c.C7783T	p.R2595C	.	.	.
AMZ2	51321	broad.mit.edu	36	17	63762237	63762237	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033570	exon6	c.C684A	p.D228E	.	.	.
ABCA8	10351	broad.mit.edu	36	17	64393009	64393009	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007168	exon25	c.G3352A	p.E1118K	.	.	.
ABCA9	10350	broad.mit.edu	36	17	64483912	64483912	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080283	exon38	c.G4735A	p.D1579N	.	.	.
ABCA9	10350	broad.mit.edu	36	17	64491809	64491809	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080283	exon35	c.G4482T	p.M1494I	.	.	.
ABCA9	10350	broad.mit.edu	36	17	64499940	64499940	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080283	exon28	c.G3687T	p.K1229N	.	.	.
ABCA9	10350	broad.mit.edu	36	17	64515859	64515859	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080283	exon24	c.T3260A	p.I1087K	.	.	.
ABCA9	10350	broad.mit.edu	36	17	64535518	64535518	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080283	exon13	c.G1649T	p.R550I	.	.	.
ABCA6	23460	broad.mit.edu	36	17	64631104	64631104	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080284	exon10	c.A1307C	p.N436T	.	.	.
KIAA0753	9851	broad.mit.edu	36	17	6467039	6467039	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014804	exon6	c.G991C	p.A331P	.	.	.
KIAA0753	9851	broad.mit.edu	36	17	6472310	6472310	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014804	exon3	c.C569T	p.S190L	.	.	.
ABCA5	23461	broad.mit.edu	36	17	64793963	64793963	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172232	exon16	c.G2126A	p.R709H	.	.	.
ABCA5	23461	broad.mit.edu	36	17	64797657	64797657	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172232	exon13	c.G1723T	p.E575X	.	.	.
ABCA5	23461	broad.mit.edu	36	17	64799051	64799051	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172232	exon12	c.G1507T	p.D503Y	.	.	.
FBXO39	162517	broad.mit.edu	36	17	6624832	6624832	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153230	exon2	c.G921A	p.P307P	.	.	.
SDK2	54549	broad.mit.edu	36	17	68858106	68858106	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144952	exon43	c.A5903G	p.N1968S	.	.	.
CLEC10A	10462	broad.mit.edu	36	17	6920992	6920992	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182906	exon4	c.G223T	p.D75Y	.	.	.
DNAI2	64446	broad.mit.edu	36	17	69789593	69789593	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023036	exon2	c.C42T	p.F14F	.	.	.
DNAI2	64446	broad.mit.edu	36	17	69792786	69792786	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023036	exon3	c.C196T	p.R66W	.	.	.
CD300A	11314	broad.mit.edu	36	17	69981391	69981391	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007261	exon2	c.G162T	p.Q54H	.	.	.
CD300E	342510	broad.mit.edu	36	17	70124890	70124890	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181449	exon2	c.G350A	p.R117H	.	.	.
TMEM104	54868	broad.mit.edu	36	17	70343770	70343770	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017728	exon10	c.C840T	p.C280C	.	.	.
GRIN2C	2905	broad.mit.edu	36	17	70353871	70353871	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000835	exon11	c.G2279A	p.G760D	.	.	.
OTOP2	92736	broad.mit.edu	36	17	70438145	70438145	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178160	exon6	c.G820T	p.G274C	.	.	.
SLC16A5	9121	broad.mit.edu	36	17	70607957	70607957	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004695	exon5	c.G604T	p.E202X	.	.	.
MIF4GD	57409	broad.mit.edu	36	17	70775829	70775829	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020679	exon4	c.T224G	p.I75S	.	.	.
PHF23	79142	broad.mit.edu	36	17	7080213	7080213	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024297	exon4	c.G757T	p.E253X	.	.	.
PHF23	79142	broad.mit.edu	36	17	7080418	7080418	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024297	exon4	c.G552T	p.K184N	.	.	.
CLDN7	1366	broad.mit.edu	36	17	7104719	7104719	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185022	exon4	c.G439T	p.D147Y	.	.	.
ZACN	353174	broad.mit.edu	36	17	71589020	71589020	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_180990	exon6	c.T611C	p.V204A	.	.	.
PLSCR3	57048	broad.mit.edu	36	17	7237658	7237658	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020360	exon3	c.G229A	p.E77K	.	.	.
MGAT5B	146664	broad.mit.edu	36	17	72448435	72448435	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199172	exon14	c.G1758T	p.E586D	.	.	.
CHRNB1	1140	broad.mit.edu	36	17	7289374	7289374	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000747	exon2	c.C120T	p.S40S	.	.	.
CHRNB1	1140	broad.mit.edu	36	17	7290927	7290927	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000747	exon4	c.G295A	p.D99N	.	.	.
TP53	7157	broad.mit.edu	36	17	7518937	7518937	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126114	exon6	c.C637T	p.R213X	 TP53,central_nervous_system,brain,Substitution - Missense,+1 	.	.
TP53	7157	broad.mit.edu	36	17	7519260	7519260	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126114	exon5	c.A395C	p.K132T	 TP53,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1 	.	.
RNF213	57674	broad.mit.edu	36	17	75934962	75934962	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020914	exon30	c.G8379T	p.K2793N	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7609560	7609560	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020877	exon20	c.G3463T	p.D1155Y	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7618898	7618898	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020877	exon28	c.G4598A	p.R1533H	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7630194	7630194	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020877	exon39	c.C6157T	p.R2053X	.	.	.
CCDC137	339230	broad.mit.edu	36	17	77249193	77249193	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199287	exon4	c.G512A	p.R171Q	.	.	.
TBCD	6904	broad.mit.edu	36	17	78444783	78444783	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005993	exon17	c.T1635C	p.C545C	.	.	.
TBCD	6904	broad.mit.edu	36	17	78472729	78472729	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005993	exon25	c.G2165A	p.R722H	.	.	.
GUCY2D	3000	broad.mit.edu	36	17	7850526	7850526	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000180	exon4	c.C1147A	p.R383R	.	.	.
ALOX15B	247	broad.mit.edu	36	17	7888906	7888906	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039130	exon6	c.C711A	p.F237L	.	.	.
C17orf68	80169	broad.mit.edu	36	17	8082450	8082450	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025099	exon3	c.C420T	p.G140G	.	.	.
WDR16	146845	broad.mit.edu	36	17	9456507	9456507	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145054	exon8	c.T1011C	p.D337D	.	.	.
CCDC144B	284047	broad.mit.edu	36	17	18454246	18454246	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
KRT40	125115	broad.mit.edu	36	17	36393897	36393897	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
APCDD1	147495	broad.mit.edu	36	18	10458527	10458527	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153000	exon2	c.G120T	p.E40D	.	.	.
CEP192	55125	broad.mit.edu	36	18	13104135	13104135	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032142	exon42	c.G7174A	p.E2392K	.	.	.
MC5R	4161	broad.mit.edu	36	18	13816203	13816203	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005913	exon1	c.G439A	p.A147T	.	.	.
ROCK1	6093	broad.mit.edu	36	18	16788807	16788807	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005406	exon31	c.G3788T	p.R1263I	.	.	.
ESCO1	114799	broad.mit.edu	36	18	17398265	17398265	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052911	exon7	c.G1718A	p.R573Q	.	.	.
ESCO1	114799	broad.mit.edu	36	18	17407692	17407692	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052911	exon4	c.A1111G	p.T371A	.	.	.
ABHD3	171586	broad.mit.edu	36	18	17536288	17536288	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138340	exon3	c.G496T	p.E166X	.	.	.
MIB1	57534	broad.mit.edu	36	18	17698493	17698493	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020774	exon21	c.C2889T	p.C963C	.	.	.
CTAGE1	64693	broad.mit.edu	36	18	18251615	18251615	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172241	exon1	c.C158A	p.S53Y	.	.	.
RBBP8	5932	broad.mit.edu	36	18	18816307	18816307	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203291	exon7	c.A557G	p.Y186C	.	.	.
LAMA3	3909	broad.mit.edu	36	18	19783811	19783811	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127718	exon33	c.G4441A	p.G1481R	.	.	.
CABYR	26256	broad.mit.edu	36	18	19989716	19989716	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138644	exon4	c.G253T	p.E85X	.	.	.
IMPACT	55364	broad.mit.edu	36	18	20282076	20282076	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018439	exon9	c.G690T	p.Q230H	.	.	.
HRH4	59340	broad.mit.edu	36	18	20311502	20311502	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143828	exon2	c.A887G	p.H296R	.	.	.
ZNF521	25925	broad.mit.edu	36	18	21059952	21059952	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015461	exon4	c.A1928G	p.Y643C	.	.	.
TAF4B	6875	broad.mit.edu	36	18	22149349	22149349	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005640	exon10	c.T1991G	p.I664S	.	.	.
CHST9	83539	broad.mit.edu	36	18	22750576	22750576	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031422	exon6	c.C977A	p.S326Y	.	.	.
CDH2	1000	broad.mit.edu	36	18	23816951	23816951	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001792	exon14	c.T2304G	p.D768E	.	.	.
CDH2	1000	broad.mit.edu	36	18	23822588	23822588	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001792	exon11	c.G1639T	p.D547Y	.	.	.
CDH2	1000	broad.mit.edu	36	18	23824100	23824100	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001792	exon10	c.C1557A	p.F519L	.	.	.
DSC1	1823	broad.mit.edu	36	18	26982522	26982522	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004948	exon6	c.G709T	p.D237Y	.	.	.
DSG2	1829	broad.mit.edu	36	18	27379937	27379937	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001943	exon15	c.A2590G	p.N864D	.	.	.
TTR	7276	broad.mit.edu	36	18	27429160	27429160	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000371	exon3	c.G280T	p.D94Y	.	.	.
B4GALT6	9331	broad.mit.edu	36	18	27461069	27461069	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004775	exon7	c.G790T	p.E264X	.	.	.
MEP1B	4225	broad.mit.edu	36	18	28051904	28051904	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005925	exon14	c.G2069A	p.R690Q	.	.	.
MYOM1	8736	broad.mit.edu	36	18	3069252	3069252	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019856	exon33	c.G4285T	p.D1429Y	.	.	.
ZNF24	7572	broad.mit.edu	36	18	31171321	31171321	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006965	exon4	c.G980T	p.R327I	.	.	.
GALNT1	2589	broad.mit.edu	36	18	31523240	31523240	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020474	exon6	c.A966C	p.E322D	.	.	.
ELP2	55250	broad.mit.edu	36	18	32004045	32004045	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018255	exon20	c.G2098A	p.D700N	.	.	.
MOCOS	55034	broad.mit.edu	36	18	32082948	32082948	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017947	exon10	c.G2026C	p.V676L	.	.	.
KIAA1328	57536	broad.mit.edu	36	18	32678253	32678253	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020776	exon4	c.G322T	p.E108X	.	.	.
COLEC12	81035	broad.mit.edu	36	18	336479	336479	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130386	exon5	c.T1143G	p.D381E	.	.	.
PIK3C3	5289	broad.mit.edu	36	18	37901364	37901364	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002647	exon24	c.C2538T	p.F846F	.	.	.
SYT4	6860	broad.mit.edu	36	18	39104373	39104373	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020783	exon4	c.G1209A	p.E403E	.	.	.
ATP5A1	498	broad.mit.edu	36	18	41923911	41923911	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004046	exon4	c.G359A	p.G120E	.	.	.
ST8SIA5	29906	broad.mit.edu	36	18	42526194	42526194	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013305	exon3	c.G247A	p.D83N	.	.	.
SMAD2	4087	broad.mit.edu	36	18	43625745	43625745	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135937	exon9	c.G1154T	p.R385I	.	.	.
ME2	4200	broad.mit.edu	36	18	46701513	46701513	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168335	exon10	c.A1014C	p.Q338H	.	.	.
ELAC1	55520	broad.mit.edu	36	18	46764604	46764604	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018696	exon3	c.C298T	p.R100W	.	.	.
ELAC1	55520	broad.mit.edu	36	18	46764693	46764693	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018696	exon3	c.A387T	p.Q129H	.	.	.
POLI	11201	broad.mit.edu	36	18	50074065	50074065	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007195	exon10	c.A1453C	p.N485H	.	.	.
STARD6	147323	broad.mit.edu	36	18	50105224	50105224	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139171	exon6	c.C499G	p.L167V	.	.	.
C18orf26	284254	broad.mit.edu	36	18	50416056	50416056	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173629	exon3	c.C315T	p.C105C	.	.	.
RAB27B	5874	broad.mit.edu	36	18	50707478	50707478	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004163	exon6	c.G493A	p.A165T	.	.	.
WDR7	23335	broad.mit.edu	36	18	52575010	52575010	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015285	exon15	c.G2188A	p.G730R	.	.	.
ST8SIA3	51046	broad.mit.edu	36	18	53175152	53175152	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015879	exon3	c.C313A	p.L105I	.	.	.
ALPK2	115701	broad.mit.edu	36	18	54353149	54353149	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052947	exon5	c.G5250T	p.K1750N	.	.	.
ALPK2	115701	broad.mit.edu	36	18	54354112	54354112	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052947	exon5	c.C4287T	p.G1429G	.	.	.
MALT1	10892	broad.mit.edu	36	18	54552542	54552542	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173844	exon11	c.C1391A	p.P464Q	.	.	.
CDH20	28316	broad.mit.edu	36	18	57357310	57357310	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031891	exon8	c.C1482A	p.F494L	.	.	.
PHLPP1	23239	broad.mit.edu	36	18	58714083	58714083	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194449	exon6	c.C2303A	p.S768Y	.	.	.
SERPINB4	6318	broad.mit.edu	36	18	59459183	59459183	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002974	exon5	c.A374C	p.K125T	.	.	.
SERPINB4	6318	broad.mit.edu	36	18	59475060	59475060	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006919	exon7	c.C753T	p.I251I	.	.	.
SERPINB2	5055	broad.mit.edu	36	18	59719999	59719999	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002575	exon6	c.C581T	p.T194I	.	.	.
CLUL1	27098	broad.mit.edu	36	18	615017	615017	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014410	exon4	c.C408A	p.S136S	.	.	.
CDH19	28513	broad.mit.edu	36	18	62323239	62323239	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021153	exon12	c.C2109T	p.L703L	.	.	.
DSEL	92126	broad.mit.edu	36	18	63329602	63329602	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032160	exon2	c.C3254T	p.S1085L	.	.	.
DSEL	92126	broad.mit.edu	36	18	63329677	63329677	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032160	exon2	c.C3179A	p.S1060Y	.	.	.
DSEL	92126	broad.mit.edu	36	18	63330813	63330813	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032160	exon2	c.G2043T	p.M681I	.	.	.
DSEL	92126	broad.mit.edu	36	18	63331383	63331383	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032160	exon2	c.A1473G	p.G491G	.	.	.
DSEL	92126	broad.mit.edu	36	18	63332252	63332252	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032160	exon2	c.C604T	p.R202X	.	.	.
ENOSF1	55556	broad.mit.edu	36	18	680630	680630	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126123	exon7	c.G291A	p.E97E	.	.	.
ZNF407	55628	broad.mit.edu	36	18	70730864	70730864	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017757	exon6	c.G5131T	p.E1711X	.	.	.
ZNF407	55628	broad.mit.edu	36	18	70904398	70904398	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017757	exon8	c.C5733A	p.V1911V	.	.	.
ZNF516	9658	broad.mit.edu	36	18	72221119	72221119	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014643	exon4	c.G1939A	p.A647T	.	.	.
ATP9B	374868	broad.mit.edu	36	18	75074969	75074969	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198531	exon11	c.C1050A	p.V350V	.	.	.
PTPRM	5797	broad.mit.edu	36	18	8103585	8103585	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002845	exon12	c.C1958A	p.S653Y	.	.	.
ADCYAP1	116	broad.mit.edu	36	18	898273	898273	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099733	exon4	c.G250A	p.A84T	.	.	.
ANKRD12	23253	broad.mit.edu	36	18	9245953	9245953	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015208	exon9	c.A2688C	p.K896N	.	.	.
TXNDC2	84203	broad.mit.edu	36	18	9876891	9876891	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098529	exon2	c.G415T	p.E139X	.	.	.
TXNDC2	84203	broad.mit.edu	36	18	9878028	9878028	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098529	exon2	c.G1552A	p.A518T	.	.	.
ZNF302	55900	broad.mit.edu	36	19	39865967	39865968	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012320	exon4	c.198_199insA	p.E66fs	.	.	.
SIGLEC14	100049587	broad.mit.edu	36	19	56838657	56838658	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001098612	exon6	c.1093_1094insT	p.L365fs	.	.	.
S1PR5	53637	broad.mit.edu	36	19	10486529	10486529	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030760	exon2	c.G159T	p.E53D	.	.	.
SMARCA4	6597	broad.mit.edu	36	19	10961016	10961016	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003072	exon7	c.G1142A	p.R381Q	.	.	.
LDLR	3949	broad.mit.edu	36	19	11085056	11085056	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195802	exon8	c.T926C	p.V309A	.	.	.
ELAVL3	1995	broad.mit.edu	36	19	11426374	11426374	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001420	exon7	c.C1071A	p.V357V	.	.	.
ACP5	54	broad.mit.edu	36	19	11548966	11548966	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111036	exon3	c.G167A	p.R56Q	.	.	.
ZNF627	199692	broad.mit.edu	36	19	11589546	11589546	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145295	exon4	c.G1228T	p.E410X	.	.	.
ZNF491	126069	broad.mit.edu	36	19	11778796	11778796	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152356	exon3	c.G1028A	p.R343Q	.	.	.
ZNF491	126069	broad.mit.edu	36	19	11778976	11778976	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152356	exon3	c.G1208T	p.R403I	.	.	.
ZNF763	284390	broad.mit.edu	36	19	11950902	11950902	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012753	exon4	c.C1172T	p.A391V	 ZNF440L,central_nervous_system,brain,Substitution - coding silent,-1 	.	.
ZNF878	729747	broad.mit.edu	36	19	12016013	12016013	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080404	exon5	c.G1344T	p.G448G	.	.	.
ZNF20	7568	broad.mit.edu	36	19	12104424	12104424	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021143	exon4	c.G1577A	p.R526K	.	.	.
ZNF20	7568	broad.mit.edu	36	19	12107636	12107636	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021143	exon2	c.G87T	p.K29N	.	.	.
ZNF625	90589	broad.mit.edu	36	19	12117527	12117527	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145233	exon4	c.G506A	p.R169Q	.	.	.
ZNF709	163051	broad.mit.edu	36	19	12435925	12435925	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152601	exon4	c.G1811A	p.R604Q	.	.	.
ZNF709	163051	broad.mit.edu	36	19	12436501	12436501	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152601	exon4	c.G1235T	p.R412I	.	.	.
ZNF709	163051	broad.mit.edu	36	19	12437325	12437325	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152601	exon4	c.G411T	p.E137D	.	.	.
ZNF791	163049	broad.mit.edu	36	19	12600307	12600307	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153358	exon4	c.C964A	p.H322N	.	.	.
BEST2	54831	broad.mit.edu	36	19	12729540	12729540	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017682	exon9	c.C1179A	p.F393L	.	.	.
RTBDN	83546	broad.mit.edu	36	19	12797536	12797536	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031429	exon7	c.G770A	p.S257N	.	.	.
IL27RA	9466	broad.mit.edu	36	19	14018076	14018076	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004843	exon7	c.G879A	p.A293A	.	.	.
EMR3	84658	broad.mit.edu	36	19	14633866	14633866	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032571	exon4	c.C264T	p.V88V	.	.	.
EMR2	30817	broad.mit.edu	36	19	14727535	14727535	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152920	exon12	c.C1167A	p.I389I	.	.	.
CASP14	23581	broad.mit.edu	36	19	15027318	15027318	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012114	exon6	c.G598T	p.G200X	.	.	.
OR1I1	126370	broad.mit.edu	36	19	15058903	15058903	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004713	exon1	c.C27A	p.I9I	.	.	.
OR1I1	126370	broad.mit.edu	36	19	15059245	15059245	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004713	exon1	c.C369T	p.F123F	.	.	.
AKAP8L	26993	broad.mit.edu	36	19	15373257	15373257	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014371	exon5	c.G520A	p.D174N	.	.	.
WIZ	58525	broad.mit.edu	36	19	15398814	15398814	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021241	exon4	c.G1060T	p.D354Y	.	.	.
RASAL3	64926	broad.mit.edu	36	19	15435955	15435955	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022904	exon2	c.C215A	p.S72Y	.	.	.
CYP4F22	126410	broad.mit.edu	36	19	15515986	15515986	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173483	exon10	c.C1032A	p.I344I	.	.	.
TPM4	7171	broad.mit.edu	36	19	16060908	16060908	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145160	exon6	c.C617A	p.S206Y	.	.	.
CHERP	10523	broad.mit.edu	36	19	16513741	16513741	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006387	exon2	c.C139A	p.L47I	.	.	.
GTPBP3	84705	broad.mit.edu	36	19	17310383	17310383	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032620	exon4	c.G424A	p.E142K	.	.	.
SLC27A1	376497	broad.mit.edu	36	19	17458627	17458627	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198580	exon2	c.C423T	p.F141F	.	.	.
FAM129C	199786	broad.mit.edu	36	19	17525282	17525282	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173544	exon16	c.C2004T	p.F668F	.	.	.
UNC13A	23025	broad.mit.edu	36	19	17581822	17581822	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080421	exon41	c.G4738A	p.D1580N	.	.	.
JAK3	3718	broad.mit.edu	36	19	17809823	17809823	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000215	exon12	c.G1619A	p.R540H	.	.	.
LRRC25	126364	broad.mit.edu	36	19	18363933	18363933	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145256	exon2	c.C782T	p.A261V	.	.	.
MAU2	23383	broad.mit.edu	36	19	19326200	19326200	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015329	exon17	c.G1585A	p.A529T	.	.	.
ZNF93	81931	broad.mit.edu	36	19	19905574	19905574	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031218	exon4	c.G810A	p.S270S	.	.	.
ZNF93	81931	broad.mit.edu	36	19	19905762	19905762	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031218	exon4	c.G998T	p.R333I	.	.	.
ZNF626	199777	broad.mit.edu	36	19	20599272	20599272	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001076675	exon4	c.A1251C	p.K417N	.	.	.
ZNF626	199777	broad.mit.edu	36	19	20599365	20599365	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001076675	exon4	c.G1158A	p.T386T	.	.	.
ZNF85	7639	broad.mit.edu	36	19	20923909	20923909	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003429	exon4	c.A749C	p.K250T	.	.	.
ZNF85	7639	broad.mit.edu	36	19	20924819	20924819	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003429	exon4	c.T1659C	p.L553L	.	.	.
ZNF430	80264	broad.mit.edu	36	19	21031478	21031478	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172671	exon5	c.A521G	p.E174G	.	.	.
ZNF431	170959	broad.mit.edu	36	19	21141008	21141008	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133473	exon3	c.G127A	p.E43K	.	.	.
ZNF493	284443	broad.mit.edu	36	19	21399056	21399056	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175910	exon2	c.C1371A	p.F457L	.	.	.
DOT1L	84444	broad.mit.edu	36	19	2142155	2142155	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032482	exon5	c.G409A	p.G137R	.	.	.
ZNF429	353088	broad.mit.edu	36	19	21512297	21512297	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001415	exon4	c.G1602T	p.E534D	.	.	.
DOT1L	84444	broad.mit.edu	36	19	2158633	2158633	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032482	exon11	c.C917T	p.T306M	.	.	.
ZNF43	7594	broad.mit.edu	36	19	21793833	21793833	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003423	exon2	c.G34T	p.E12X	.	.	.
ZNF208	7757	broad.mit.edu	36	19	21946362	21946362	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007153	exon4	c.G3314T	p.R1105I	.	.	.
ZNF257	113835	broad.mit.edu	36	19	22063222	22063222	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033468	exon4	c.G830T	p.R277I	.	.	.
ZNF676	163223	broad.mit.edu	36	19	22154701	22154701	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001411	exon3	c.G1658T	p.R553I	.	.	.
ZNF676	163223	broad.mit.edu	36	19	22155708	22155708	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001411	exon3	c.A651G	p.V217V	.	.	.
ZNF676	163223	broad.mit.edu	36	19	22156174	22156174	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001411	exon3	c.C185A	p.S62Y	.	.	.
ZNF98	148198	broad.mit.edu	36	19	22366280	22366280	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098626	exon4	c.C1597A	p.L533I	.	.	.
ZNF98	148198	broad.mit.edu	36	19	22366418	22366418	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098626	exon4	c.G1459T	p.E487X	.	.	.
ZNF492	57615	broad.mit.edu	36	19	22639297	22639297	+	Missense_Mutation	SNP	G	T	T	rs71357911	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020855	exon4	c.G986T	p.R329I	.	.	.
ZNF99	7652	broad.mit.edu	36	19	22731374	22731374	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080409	exon7	c.G2637T	p.K879N	.	.	.
ZNF675	171392	broad.mit.edu	36	19	23629086	23629086	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138330	exon4	c.G489T	p.K163N	.	.	.
TSHZ3	57616	broad.mit.edu	36	19	36462254	36462254	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020856	exon2	c.C285T	p.N95N	.	.	.
GPATCH1	55094	broad.mit.edu	36	19	38276174	38276174	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018025	exon4	c.G364T	p.D122Y	.	.	.
ZNF599	148103	broad.mit.edu	36	19	39942824	39942824	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007248	exon4	c.A722G	p.D241G	.	.	.
MAG	4099	broad.mit.edu	36	19	40478466	40478466	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199216	exon4	c.G82A	p.A28T	.	.	.
CD22	933	broad.mit.edu	36	19	40523766	40523766	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185100	exon7	c.G1392A	p.E464E	.	.	.
CD22	933	broad.mit.edu	36	19	40528931	40528931	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185100	exon12	c.G2246T	p.G749V	.	.	.
FFAR3	2865	broad.mit.edu	36	19	40542092	40542092	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005304	exon2	c.G460T	p.E154X	.	.	.
DMKN	93099	broad.mit.edu	36	19	40695416	40695416	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033317	exon2	c.A543G	p.A181A	.	.	.
SBSN	374897	broad.mit.edu	36	19	40709604	40709604	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166034	exon1	c.G1420T	p.D474Y	.	.	.
ATP4A	495	broad.mit.edu	36	19	40745310	40745310	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000704	exon4	c.G287A	p.G96D	.	.	.
ZBTB32	27033	broad.mit.edu	36	19	40898030	40898030	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014383	exon2	c.G662A	p.G221D	.	.	.
U2AF1L4	199746	broad.mit.edu	36	19	40927106	40927106	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144987	exon3	c.C189T	p.C63C	.	.	.
NPHS1	4868	broad.mit.edu	36	19	41013857	41013857	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004646	exon27	c.G3419A	p.R1140H	.	.	.
NPHS1	4868	broad.mit.edu	36	19	41022063	41022063	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004646	exon22	c.T3025G	p.Y1009D	.	.	.
APLP1	333	broad.mit.edu	36	19	41057490	41057490	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024807	exon10	c.G1223A	p.R408H	.	.	.
ZFP82	284406	broad.mit.edu	36	19	41575506	41575506	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133466	exon5	c.A1576C	p.K526Q	.	.	.
ZNF566	84924	broad.mit.edu	36	19	41655730	41655730	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145344	exon4	c.C155A	p.P52Q	.	.	.
ZNF529	57711	broad.mit.edu	36	19	41730837	41730837	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145649	exon6	c.C463A	p.H155N	.	.	.
ZNF382	84911	broad.mit.edu	36	19	41793435	41793435	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032825	exon4	c.A183G	p.Q61Q	.	.	.
ZNF461	92283	broad.mit.edu	36	19	41821684	41821684	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153257	exon6	c.C1403T	p.P468L	.	.	.
ODF3L2	284451	broad.mit.edu	36	19	418682	418682	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182577	exon3	c.G316A	p.A106T	.	.	.
ZNF345	25850	broad.mit.edu	36	19	42060573	42060573	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003419	exon3	c.G1001T	p.R334I	.	.	.
ZNF829	374899	broad.mit.edu	36	19	42074418	42074418	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037232	exon6	c.G1115T	p.R372I	.	.	.
ZNF585A	199704	broad.mit.edu	36	19	42334729	42334729	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199126	exon6	c.G1747A	p.E583K	.	.	.
ZNF585A	199704	broad.mit.edu	36	19	42335268	42335268	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199126	exon6	c.G1208A	p.R403Q	.	.	.
ZNF585A	199704	broad.mit.edu	36	19	42335775	42335775	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199126	exon6	c.G701A	p.R234Q	.	.	.
ZNF569	148266	broad.mit.edu	36	19	42596349	42596349	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152484	exon6	c.G1051T	p.E351X	.	.	.
ZNF540	163255	broad.mit.edu	36	19	42795381	42795381	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152606	exon5	c.C1360A	p.L454I	.	.	.
ZFP30	22835	broad.mit.edu	36	19	42818161	42818161	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014898	exon6	c.G1121T	p.R374I	.	.	.
SH3GL1	6455	broad.mit.edu	36	19	4314771	4314771	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003025	exon6	c.C570T	p.F190F	.	.	.
GGN	199720	broad.mit.edu	36	19	43568094	43568094	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152657	exon3	c.G1648A	p.E550K	.	.	.
CHAF1A	10036	broad.mit.edu	36	19	4380561	4380561	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005483	exon9	c.G1731T	p.K577N	.	.	.
LRG1	116844	broad.mit.edu	36	19	4489114	4489114	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052972	exon2	c.C882T	p.F294F	.	.	.
DYRK1B	9149	broad.mit.edu	36	19	45010857	45010857	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006483	exon6	c.G727A	p.E243K	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45087834	45087834	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003890	exon15	c.G7403A	p.R2468H	.	.	.
ZNF546	339327	broad.mit.edu	36	19	45212033	45212033	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178544	exon7	c.G1016T	p.R339I	.	.	.
ZNF546	339327	broad.mit.edu	36	19	45212306	45212306	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178544	exon7	c.G1289A	p.R430Q	.	.	.
ZNF780B	163131	broad.mit.edu	36	19	45233732	45233732	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005851	exon5	c.C874A	p.L292I	.	.	.
AKT2	208	broad.mit.edu	36	19	45440306	45440306	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001626	exon5	c.C416T	p.A139V	.	.	.
SHKBP1	92799	broad.mit.edu	36	19	45775363	45775363	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138392	exon4	c.G247T	p.E83X	.	.	.
CYP2A7	1549	broad.mit.edu	36	19	46078303	46078303	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000764	exon3	c.C414T	p.F138F	.	.	.
AXL	558	broad.mit.edu	36	19	46418931	46418931	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021913	exon3	c.T349C	p.C117R	.	.	.
AXL	558	broad.mit.edu	36	19	46454280	46454280	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021913	exon18	c.G2120A	p.R707H	.	.	.
CEACAM7	1087	broad.mit.edu	36	19	46882937	46882937	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006890	exon2	c.C120T	p.V40V	.	.	.
ARHGEF1	9138	broad.mit.edu	36	19	47084177	47084177	+	Missense_Mutation	SNP	C	G	G	rs41306984	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198977	exon3	c.C99G	p.N33K	.	.	.
TMEM145	284339	broad.mit.edu	36	19	47511011	47511011	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173633	exon6	c.G447T	p.E149D	.	.	.
PSG8	440533	broad.mit.edu	36	19	47954029	47954029	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130168	exon2	c.C308T	p.A103V	.	.	.
PSG9	5678	broad.mit.edu	36	19	48454404	48454404	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002784	exon5	c.C1033T	p.R345C	.	.	.
ARRDC5	645432	broad.mit.edu	36	19	4847697	4847697	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080523	exon2	c.G487T	p.E163X	.	.	.
ZNF283	284349	broad.mit.edu	36	19	49043189	49043189	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181845	exon7	c.G596T	p.R199I	.	.	.
ZNF283	284349	broad.mit.edu	36	19	49043273	49043273	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181845	exon7	c.G680T	p.R227I	.	.	.
ZNF283	284349	broad.mit.edu	36	19	49043768	49043768	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181845	exon7	c.G1175A	p.R392Q	.	.	.
ZNF223	7766	broad.mit.edu	36	19	49262773	49262773	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013361	exon5	c.A952G	p.T318A	.	.	.
ZNF284	342909	broad.mit.edu	36	19	49281932	49281932	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037813	exon5	c.A461C	p.K154T	.	.	.
ZFP112	7771	broad.mit.edu	36	19	49536532	49536532	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083335	exon3	c.G18T	p.E6D	.	.	.
ZNF180	7733	broad.mit.edu	36	19	49673000	49673000	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013256	exon5	c.G1538T	p.R513I	.	.	.
ZNF180	7733	broad.mit.edu	36	19	49673336	49673336	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013256	exon5	c.G1202T	p.R401I	.	.	.
ZNF180	7733	broad.mit.edu	36	19	49673420	49673420	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013256	exon5	c.G1118T	p.R373I	.	.	.
EXOC3L2	90332	broad.mit.edu	36	19	50419991	50419991	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138568	exon6	c.C425T	p.A142V	.	.	.
ERCC1	2067	broad.mit.edu	36	19	50608765	50608765	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_202001	exon8	c.C853A	p.L285M	.	.	.
RTN2	6253	broad.mit.edu	36	19	50690025	50690025	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_206900	exon3	c.C158T	p.S53L	.	.	.
PPM1N	147699	broad.mit.edu	36	19	50697150	50697150	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080401	exon5	c.G1260A	p.T420T	.	.	.
PGLYRP1	8993	broad.mit.edu	36	19	51217977	51217977	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005091	exon1	c.A143C	p.Q48P	.	.	.
CCDC8	83987	broad.mit.edu	36	19	51606491	51606491	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032040	exon1	c.A1417G	p.K473E	.	.	.
PNMAL1	55228	broad.mit.edu	36	19	51666017	51666017	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018215	exon2	c.T116C	p.I39T	.	.	.
PTPRS	5802	broad.mit.edu	36	19	5225310	5225310	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002850	exon3	c.C137T	p.S46L	.	.	.
SAE1	10055	broad.mit.edu	36	19	52348069	52348069	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005500	exon4	c.C459A	p.F153L	.	.	.
NAPA	8775	broad.mit.edu	36	19	52695753	52695753	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003827	exon3	c.G244A	p.A82T	.	.	.
CRX	1406	broad.mit.edu	36	19	53034914	53034914	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000554	exon4	c.G778A	p.A260T	.	.	.
PLA2G4C	8605	broad.mit.edu	36	19	53299679	53299679	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159323	exon4	c.G235A	p.A79T	.	.	.
CARD8	22900	broad.mit.edu	36	19	53425560	53425560	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184902	exon10	c.G982A	p.E328K	.	.	.
KDELR1	10945	broad.mit.edu	36	19	53579365	53579365	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006801	exon4	c.G538A	p.A180T	.	.	.
HRC	3270	broad.mit.edu	36	19	54349968	54349968	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002152	exon1	c.C339T	p.V113V	.	.	.
TEAD2	8463	broad.mit.edu	36	19	54550228	54550228	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003598	exon6	c.G516A	p.W172X	.	.	.
VRK3	51231	broad.mit.edu	36	19	55183443	55183443	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025778	exon11	c.G1065T	p.Q355H	.	.	.
MYBPC2	4606	broad.mit.edu	36	19	55649124	55649124	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004533	exon17	c.G1785T	p.E595D	.	.	.
KLK4	9622	broad.mit.edu	36	19	56103709	56103709	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004917	exon3	c.C413T	p.A138V	.	.	.
KLK5	25818	broad.mit.edu	36	19	56143824	56143824	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077492	exon5	c.C610A	p.L204I	.	.	.
KLK9	284366	broad.mit.edu	36	19	56201562	56201562	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012315	exon3	c.C430A	p.L144I	.	.	.
KLK13	26085	broad.mit.edu	36	19	56253705	56253705	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015596	exon4	c.C547T	p.L183F	.	.	.
SIGLEC7	27036	broad.mit.edu	36	19	56339725	56339725	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014385	exon2	c.G684A	p.T228T	.	.	.
LONP1	9361	broad.mit.edu	36	19	5645431	5645431	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004793	exon15	c.G2287A	p.G763S	.	.	.
CLDND2	125875	broad.mit.edu	36	19	56562529	56562529	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152353	exon3	c.C424A	p.L142I	.	.	.
LIM2	3982	broad.mit.edu	36	19	56575575	56575575	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161748	exon4	c.C456T	p.F152F	.	.	.
CEACAM18	729767	broad.mit.edu	36	19	56675404	56675404	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080405	exon3	c.C241A	p.L81M	.	.	.
SIGLEC6	946	broad.mit.edu	36	19	56725001	56725001	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001245	exon5	c.C801T	p.G267G	.	.	.
ZNF175	7728	broad.mit.edu	36	19	56782880	56782880	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007147	exon5	c.G1484A	p.R495Q	.	.	.
FPR1	2357	broad.mit.edu	36	19	56941518	56941518	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193306	exon3	c.C542T	p.S181L	.	.	.
ZNF350	59348	broad.mit.edu	36	19	57160589	57160589	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021632	exon5	c.G929A	p.R310Q	.	.	.
ZNF615	284370	broad.mit.edu	36	19	57188630	57188630	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198480	exon6	c.G1511A	p.R504Q	.	.	.
ZNF432	9668	broad.mit.edu	36	19	57229466	57229466	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014650	exon5	c.G1278T	p.E426D	.	.	.
TMEM146	257062	broad.mit.edu	36	19	5729450	5729450	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152784	exon22	c.C2160A	p.V720V	.	.	.
ZNF616	90317	broad.mit.edu	36	19	57319079	57319079	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178523	exon3	c.C48A	p.F16L	.	.	.
ZNF836	162962	broad.mit.edu	36	19	57350204	57350204	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102657	exon5	c.G2544T	p.K848N	.	.	.
ZNF836	162962	broad.mit.edu	36	19	57351683	57351683	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102657	exon5	c.G1065T	p.E355D	.	.	.
ZNF766	90321	broad.mit.edu	36	19	57486148	57486148	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010851	exon4	c.G1292A	p.R431K	.	.	.
ZNF610	162963	broad.mit.edu	36	19	57561171	57561171	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173530	exon6	c.G728A	p.R243H	.	.	.
ZNF528	84436	broad.mit.edu	36	19	57601641	57601641	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032423	exon6	c.T204C	p.T68T	.	.	.
ZNF528	84436	broad.mit.edu	36	19	57610753	57610753	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032423	exon7	c.G836A	p.R279Q	.	.	.
ZNF528	84436	broad.mit.edu	36	19	57611376	57611376	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032423	exon7	c.C1459A	p.H487N	.	.	.
ZNF611	81856	broad.mit.edu	36	19	57900195	57900195	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161501	exon5	c.G1718T	p.R573I	.	.	.
ZNF611	81856	broad.mit.edu	36	19	57901479	57901479	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161501	exon5	c.A434C	p.N145T	.	.	.
ZNF600	162966	broad.mit.edu	36	19	57961420	57961420	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198457	exon3	c.G1401T	p.E467D	.	.	.
ZNF600	162966	broad.mit.edu	36	19	57961856	57961856	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198457	exon3	c.G965T	p.R322I	.	.	.
ZNF160	90338	broad.mit.edu	36	19	58264300	58264300	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198893	exon7	c.C1299A	p.V433V	.	.	.
ZNF415	55786	broad.mit.edu	36	19	58304631	58304631	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136038	exon4	c.A479G	p.Y160C	.	.	.
ZNF347	84671	broad.mit.edu	36	19	58337343	58337343	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172675	exon5	c.C553T	p.L185F	.	.	.
ZNF665	79788	broad.mit.edu	36	19	58359682	58359682	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024733	exon4	c.C1873T	p.P625S	.	.	.
ZNF665	79788	broad.mit.edu	36	19	58360962	58360962	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024733	exon4	c.G593T	p.R198I	.	.	.
ZNF677	342926	broad.mit.edu	36	19	58432440	58432440	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182609	exon5	c.G1352T	p.R451I	.	.	.
ZNF677	342926	broad.mit.edu	36	19	58433437	58433437	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182609	exon5	c.G355T	p.G119X	.	.	.
ZNF677	342926	broad.mit.edu	36	19	58433578	58433578	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182609	exon5	c.A214C	p.N72H	.	.	.
NLRP12	91662	broad.mit.edu	36	19	59000377	59000377	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144687	exon5	c.C2383T	p.R795W	.	.	.
CNOT3	4849	broad.mit.edu	36	19	59343810	59343810	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014516	exon11	c.C1010T	p.T337I	.	.	.
LILRB3	11025	broad.mit.edu	36	19	59414470	59414470	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006864	exon9	c.G1476A	p.E492E	.	.	.
LILRB5	10990	broad.mit.edu	36	19	59448210	59448210	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081442	exon10	c.C1489T	p.P497S	.	.	.
LILRA3	11026	broad.mit.edu	36	19	59491879	59491879	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006865	exon7	c.C1299T	p.S433S	.	.	.
KIR3DL1	3811	broad.mit.edu	36	19	60024984	60024984	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013289	exon5	c.C808T	p.R270C	.	.	.
SYT5	6861	broad.mit.edu	36	19	60378095	60378095	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003180	exon7	c.A793C	p.N265H	.	.	.
BRSK1	84446	broad.mit.edu	36	19	60490254	60490254	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032430	exon2	c.G204T	p.E68D	.	.	.
BRSK1	84446	broad.mit.edu	36	19	60506506	60506506	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032430	exon11	c.G1044T	p.K348N	.	.	.
NLRP11	204801	broad.mit.edu	36	19	61004905	61004905	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145007	exon7	c.C2016A	p.V672V	.	.	.
NLRP4	147945	broad.mit.edu	36	19	61055459	61055459	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134444	exon2	c.A201C	p.Q67H	.	.	.
NLRP4	147945	broad.mit.edu	36	19	61061310	61061310	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134444	exon3	c.C739T	p.L247L	.	.	.
NLRP13	126204	broad.mit.edu	36	19	61099173	61099173	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176810	exon11	c.C3082T	p.L1028L	.	.	.
ZNF583	147949	broad.mit.edu	36	19	61626870	61626870	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159860	exon5	c.G1031T	p.R344I	.	.	.
ZNF471	57573	broad.mit.edu	36	19	61727878	61727878	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020813	exon5	c.A630C	p.E210D	.	.	.
ZNF471	57573	broad.mit.edu	36	19	61728093	61728093	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020813	exon5	c.G845T	p.R282I	.	.	.
ZNF471	57573	broad.mit.edu	36	19	61728616	61728616	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020813	exon5	c.G1368A	p.E456E	.	.	.
ZFP28	140612	broad.mit.edu	36	19	61752191	61752191	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020828	exon5	c.C576T	p.C192C	.	.	.
ZNF470	388566	broad.mit.edu	36	19	61780746	61780746	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001668	exon6	c.G1137A	p.Q379Q	.	.	.
ZNF835	90485	broad.mit.edu	36	19	61867283	61867283	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005850	exon2	c.G1162A	p.D388N	.	.	.
PEG3	5178	broad.mit.edu	36	19	62018600	62018600	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146186	exon7	c.C3022T	p.R1008C	.	.	.
PEG3	5178	broad.mit.edu	36	19	62020676	62020676	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146186	exon7	c.G946T	p.E316X	.	.	.
PEG3	5178	broad.mit.edu	36	19	62026791	62026791	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146186	exon2	c.C463T	p.H155Y	.	.	.
ZIM3	114026	broad.mit.edu	36	19	62338114	62338114	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052882	exon5	c.G1403T	p.R468I	.	.	.
ZIM3	114026	broad.mit.edu	36	19	62340120	62340120	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052882	exon4	c.C174A	p.I58I	.	.	.
AURKC	6795	broad.mit.edu	36	19	62435833	62435833	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003160	exon4	c.G306T	p.E102D	.	.	.
ZNF543	125919	broad.mit.edu	36	19	62531471	62531471	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213598	exon4	c.C829A	p.H277N	.	.	.
ZNF543	125919	broad.mit.edu	36	19	62531859	62531859	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213598	exon4	c.G1217A	p.R406H	.	.	.
ZNF17	7565	broad.mit.edu	36	19	62624383	62624383	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006959	exon3	c.C1711T	p.R571W	.	.	.
ACER1	125981	broad.mit.edu	36	19	6263503	6263503	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133492	exon2	c.A101G	p.N34S	.	.	.
VN1R1	57191	broad.mit.edu	36	19	62659033	62659033	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020633	exon1	c.G634A	p.A212T	.	.	.
ZNF772	400720	broad.mit.edu	36	19	62677094	62677094	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024596	exon5	c.G830A	p.R277H	.	.	.
ZNF418	147686	broad.mit.edu	36	19	63129346	63129346	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133460	exon4	c.G2015T	p.R672I	.	.	.
ZNF256	10172	broad.mit.edu	36	19	63145614	63145614	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005773	exon3	c.A374C	p.K125T	.	.	.
C19orf18	147685	broad.mit.edu	36	19	63169795	63169795	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152474	exon4	c.C286T	p.P96S	.	.	.
ZNF135	7694	broad.mit.edu	36	19	63270644	63270644	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003436	exon5	c.A1016C	p.E339A	.	.	.
ZNF584	201514	broad.mit.edu	36	19	63620482	63620482	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173548	exon4	c.G785T	p.R262M	.	.	.
SLC25A41	284427	broad.mit.edu	36	19	6381170	6381170	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173637	exon3	c.C366A	p.V122V	.	.	.
CD70	970	broad.mit.edu	36	19	6541915	6541915	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001252	exon1	c.C99T	p.C33C	.	.	.
C3	718	broad.mit.edu	36	19	6628953	6628953	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000064	exon41	c.A4932G	p.K1644K	.	.	.
C3	718	broad.mit.edu	36	19	6645611	6645611	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000064	exon24	c.C2985T	p.V995V	.	.	.
EMR1	2015	broad.mit.edu	36	19	6841528	6841528	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001974	exon2	c.G68T	p.R23I	.	.	.
EMR1	2015	broad.mit.edu	36	19	6867286	6867286	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001974	exon12	c.G1327T	p.E443X	.	.	.
XAB2	56949	broad.mit.edu	36	19	7598702	7598702	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020196	exon3	c.G236A	p.R79Q	.	.	.
CD209	30835	broad.mit.edu	36	19	7716873	7716873	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144894	exon2	c.G147T	p.E49D	.	.	.
SNAPC2	6618	broad.mit.edu	36	19	7893206	7893206	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003083	exon4	c.G659A	p.G220D	.	.	.
MYO1F	4542	broad.mit.edu	36	19	8497709	8497709	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012335	exon23	c.C2585T	p.A862V	.	.	.
ZNF558	148156	broad.mit.edu	36	19	8783049	8783049	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144693	exon6	c.G1117T	p.E373X	.	.	.
MBD3L1	85509	broad.mit.edu	36	19	8814679	8814679	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145208	exon1	c.C325A	p.L109I	.	.	.
MUC16	94025	broad.mit.edu	36	19	8876680	8876680	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon29	c.G38143A	p.D12715N	.	.	.
MUC16	94025	broad.mit.edu	36	19	8908925	8908925	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon5	c.G33706T	p.D11236Y	.	.	.
MUC16	94025	broad.mit.edu	36	19	8910274	8910274	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon5	c.C32357T	p.S10786L	.	.	.
MUC16	94025	broad.mit.edu	36	19	8910458	8910458	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon5	c.C32173T	p.P10725S	.	.	.
MUC16	94025	broad.mit.edu	36	19	8917421	8917421	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.C31025A	p.S10342Y	.	.	.
MUC16	94025	broad.mit.edu	36	19	8918561	8918561	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.C29885A	p.S9962Y	.	.	.
MUC16	94025	broad.mit.edu	36	19	8922151	8922151	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.C26295A	p.I8765I	.	.	.
MUC16	94025	broad.mit.edu	36	19	8923107	8923107	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.G25339T	p.E8447X	.	.	.
MUC16	94025	broad.mit.edu	36	19	8923246	8923246	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.C25200A	p.F8400L	.	.	.
MUC16	94025	broad.mit.edu	36	19	8923987	8923987	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.C24459A	p.V8153V	.	.	.
MUC16	94025	broad.mit.edu	36	19	8927497	8927497	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.C20949A	p.V6983V	.	.	.
MUC16	94025	broad.mit.edu	36	19	8933279	8933279	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.C15167A	p.S5056Y	.	.	.
MUC16	94025	broad.mit.edu	36	19	8937314	8937314	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.C11132A	p.S3711Y	.	.	.
MUC16	94025	broad.mit.edu	36	19	8943748	8943748	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon1	c.G9067A	p.A3023T	.	.	.
MUC16	94025	broad.mit.edu	36	19	8946764	8946764	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon1	c.G6051T	p.E2017D	.	.	.
MUC16	94025	broad.mit.edu	36	19	8949345	8949345	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon1	c.C3470A	p.S1157Y	.	.	.
ZNF699	374879	broad.mit.edu	36	19	9267286	9267286	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198535	exon5	c.T1794C	p.C598C	.	.	.
ZNF699	374879	broad.mit.edu	36	19	9268184	9268184	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198535	exon5	c.G896T	p.R299I	.	.	.
ZNF266	10781	broad.mit.edu	36	19	9385066	9385066	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006631	exon11	c.G1535A	p.R512Q	.	.	.
ZNF266	10781	broad.mit.edu	36	19	9385570	9385570	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006631	exon11	c.G1031A	p.R344Q	.	.	.
ZNF560	147741	broad.mit.edu	36	19	9438428	9438428	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152476	exon10	c.G2195A	p.R732Q	.	.	.
ZNF560	147741	broad.mit.edu	36	19	9439674	9439674	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152476	exon10	c.G949T	p.E317X	.	.	.
ZNF121	7675	broad.mit.edu	36	19	9538298	9538298	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008727	exon4	c.G491A	p.R164Q	.	.	.
ZNF562	54811	broad.mit.edu	36	19	9624872	9624872	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130032	exon6	c.A1034C	p.E345A	.	.	.
ZNF846	162993	broad.mit.edu	36	19	9729918	9729918	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077624	exon6	c.G835T	p.E279X	.	.	.
GAMT	2593	broad.mit.edu	36	19	1349846	1349846	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138924	exon5	c.639delT	p.A213fs	.	.	.
LILRA2	11027	broad.mit.edu	36	19	59778203	59778203	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130917	exon4	c.546delG	p.V182fs	.	.	.
ZNF826P	664701	broad.mit.edu	36	19	20369159	20369159	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
AGL	178	broad.mit.edu	36	1	100148912	100148912	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000645	exon26	c.C3706T	p.R1236C	.	.	.
CCDC76	54482	broad.mit.edu	36	1	100379081	100379081	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019083	exon7	c.T587C	p.L196S	.	.	.
LRRC39	127495	broad.mit.edu	36	1	100393211	100393211	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144620	exon8	c.G796T	p.E266X	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103118048	103118048	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001854	exon66	c.G5053T	p.D1685Y	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103264006	103264006	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080629	exon6	c.A871C	p.K291Q	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103312861	103312861	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001854	exon4	c.G552T	p.K184N	.	.	.
SLC25A24	29957	broad.mit.edu	36	1	108544209	108544209	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013386	exon1	c.G75T	p.E25D	.	.	.
PRPF38B	55119	broad.mit.edu	36	1	109043626	109043626	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018061	exon6	c.C1102A	p.R368S	.	.	.
GPSM2	29899	broad.mit.edu	36	1	109266669	109266669	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013296	exon13	c.C1548T	p.C516C	.	.	.
CLCC1	23155	broad.mit.edu	36	1	109283795	109283795	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001048210	exon9	c.G1027T	p.A343S	.	.	.
C1orf127	148345	broad.mit.edu	36	1	10936782	10936782	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170754	exon10	c.G980A	p.C327Y	.	.	.
CYB561D1	284613	broad.mit.edu	36	1	109839324	109839324	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182580	exon2	c.C185T	p.A62V	.	.	.
MASP2	10747	broad.mit.edu	36	1	11009662	11009662	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006610	exon11	c.A1928T	p.E643V	.	.	.
EPS8L3	79574	broad.mit.edu	36	1	110097298	110097298	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139053	exon13	c.C1167A	p.F389L	.	.	.
EXOSC10	5394	broad.mit.edu	36	1	11070140	11070140	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001998	exon9	c.T1041C	p.S347S	.	.	.
KCNA10	3744	broad.mit.edu	36	1	110862225	110862225	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005549	exon1	c.G708T	p.E236D	.	.	.
KCNA2	3737	broad.mit.edu	36	1	110948858	110948858	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004974	exon2	c.G70T	p.D24Y	.	.	.
KCNA3	3738	broad.mit.edu	36	1	111017747	111017747	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002232	exon1	c.T1208C	p.F403S	.	.	.
MTOR	2475	broad.mit.edu	36	1	11117108	11117108	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004958	exon37	c.C5133T	p.I1711I	.	.	.
CD53	963	broad.mit.edu	36	1	111236546	111236546	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000560	exon3	c.C120T	p.F40F	.	.	.
DENND2D	79961	broad.mit.edu	36	1	111540147	111540147	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024901	exon6	c.T559C	p.F187L	.	.	.
CHIA	27159	broad.mit.edu	36	1	111664570	111664570	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201653	exon12	c.C1390T	p.L464F	.	.	.
OVGP1	5016	broad.mit.edu	36	1	111769551	111769551	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002557	exon4	c.C294T	p.G98G	.	.	.
DDX20	11218	broad.mit.edu	36	1	112110390	112110390	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007204	exon11	c.G1821T	p.E607D	.	.	.
KCND3	3752	broad.mit.edu	36	1	112124848	112124848	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004980	exon4	c.C1358T	p.A453V	.	.	.
UBIAD1	29914	broad.mit.edu	36	1	11256464	11256464	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013319	exon1	c.G289A	p.A97T	.	.	.
MAGI3	260425	broad.mit.edu	36	1	113998095	113998095	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152900	exon15	c.T2561C	p.L854S	.	.	.
RSBN1	54665	broad.mit.edu	36	1	114110223	114110223	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018364	exon7	c.G2311A	p.D771N	.	.	.
PTPN22	26191	broad.mit.edu	36	1	114182096	114182096	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012411	exon11	c.G1284T	p.E428D	.	.	.
AP4B1	10717	broad.mit.edu	36	1	114244216	114244216	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006594	exon6	c.A947C	p.K316T	.	.	.
DCLRE1B	64858	broad.mit.edu	36	1	114255669	114255669	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022836	exon4	c.G932A	p.S311N	.	.	.
PTCHD2	57540	broad.mit.edu	36	1	11514308	11514308	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020780	exon17	c.G3329A	p.G1110D	.	.	.
SYCP1	6847	broad.mit.edu	36	1	115220254	115220254	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003176	exon10	c.G699A	p.E233E	.	.	.
TSHB	7252	broad.mit.edu	36	1	115377638	115377638	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000549	exon2	c.C132T	p.T44T	.	.	.
TSPAN2	10100	broad.mit.edu	36	1	115417084	115417084	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005725	exon2	c.C137A	p.S46X	.	.	.
CD101	9398	broad.mit.edu	36	1	117362306	117362306	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004258	exon6	c.A1618C	p.S540R	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118332273	118332273	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206996	exon39	c.G5599A	p.D1867N	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118340641	118340641	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206996	exon34	c.T4928C	p.F1643S	.	.	.
WARS2	10352	broad.mit.edu	36	1	119377107	119377107	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015836	exon6	c.T1033C	p.L345L	.	.	.
HAO2	51179	broad.mit.edu	36	1	119725302	119725302	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016527	exon2	c.T71G	p.F24C	.	.	.
NBPF7	343505	broad.mit.edu	36	1	120184429	120184429	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001047980	exon4	c.T600A	p.D200E	.	.	.
ADAM30	11085	broad.mit.edu	36	1	120238400	120238400	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021794	exon1	c.C2083T	p.R695C	.	.	.
ADAM30	11085	broad.mit.edu	36	1	120239542	120239542	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021794	exon1	c.C941A	p.S314Y	.	.	.
NOTCH2	4853	broad.mit.edu	36	1	120262557	120262557	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024408	exon32	c.A5924G	p.D1975G	.	.	.
NOTCH2	4853	broad.mit.edu	36	1	120265951	120265951	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024408	exon29	c.C5218A	p.L1740I	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12491587	12491587	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018156	exon69	c.C13014T	p.Y4338Y	.	.	.
PRAMEF1	65121	broad.mit.edu	36	1	12778642	12778642	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023013	exon4	c.G1335A	p.R445R	.	.	.
PRAMEF8	391002	broad.mit.edu	36	1	12902588	12902588	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012277	exon3	c.G1193A	p.R398H	.	.	.
PDE4DIP	9659	broad.mit.edu	36	1	143623271	143623271	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198832	exon19	c.A2393G	p.K798R	.	.	.
RBM8A	9939	broad.mit.edu	36	1	144220397	144220397	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005105	exon5	c.A467C	p.K156T	.	.	.
RNF115	27246	broad.mit.edu	36	1	144396000	144396000	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014455	exon7	c.C632A	p.S211Y	.	.	.
RNF115	27246	broad.mit.edu	36	1	144399563	144399563	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014455	exon9	c.C901T	p.R301X	.	.	.
PDZK1	5174	broad.mit.edu	36	1	144463880	144463880	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002614	exon5	c.G556A	p.E186K	.	.	.
BCL9	607	broad.mit.edu	36	1	145558838	145558838	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004326	exon8	c.C2253T	p.R751R	.	.	.
BCL9	607	broad.mit.edu	36	1	145560772	145560772	+	Nonsense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004326	exon9	c.T2979G	p.Y993X	.	.	.
VPS45	11311	broad.mit.edu	36	1	148321520	148321520	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007259	exon10	c.C1033T	p.R345W	.	.	.
HORMAD1	84072	broad.mit.edu	36	1	148956263	148956263	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199829	exon3	c.C153T	p.C51C	.	.	.
CGN	57530	broad.mit.edu	36	1	149757800	149757800	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020770	exon2	c.G181A	p.A61T	.	.	.
SNX27	81609	broad.mit.edu	36	1	149878049	149878049	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030918	exon2	c.G373A	p.E125K	.	.	.
CELF3	11189	broad.mit.edu	36	1	149945007	149945007	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007185	exon11	c.G1185T	p.E395D	.	.	.
TCHHL1	126637	broad.mit.edu	36	1	150326089	150326089	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008536	exon3	c.C693A	p.I231I	.	.	.
HRNR	388697	broad.mit.edu	36	1	150458770	150458770	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009931	exon3	c.C1959A	p.G653G	.	.	.
FLG	2312	broad.mit.edu	36	1	150548226	150548226	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002016	exon3	c.G5760T	p.Q1920H	.	.	.
FLG	2312	broad.mit.edu	36	1	150553151	150553151	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002016	exon3	c.A835G	p.T279A	.	.	.
IVL	3713	broad.mit.edu	36	1	151150365	151150365	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005547	exon2	c.C1468A	p.L490M	.	.	.
SPRR3	6707	broad.mit.edu	36	1	151242280	151242280	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001097589	exon2	c.C160T	p.P54S	.	.	.
SPRR2B	6701	broad.mit.edu	36	1	151309742	151309742	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017418	exon3	c.G198T	p.K66N	.	.	.
NPR1	4881	broad.mit.edu	36	1	151928384	151928384	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000906	exon17	c.G2661A	p.A887A	.	.	.
NUP210L	91181	broad.mit.edu	36	1	152366463	152366463	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207308	exon9	c.T1133C	p.V378A	.	.	.
TDRD10	126668	broad.mit.edu	36	1	152786521	152786521	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182499	exon12	c.C965T	p.S322L	.	.	.
CHRNB2	1141	broad.mit.edu	36	1	152810391	152810391	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000748	exon5	c.G468T	p.K156N	.	.	.
ADAR	103	broad.mit.edu	36	1	152823930	152823930	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015841	exon15	c.G3522T	p.K1174N	.	.	.
CKS1B	1163	broad.mit.edu	36	1	153213860	153213860	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001826	exon1	c.A15C	p.Q5H	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153590993	153590993	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018489	exon16	c.C7108T	p.R2370C	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153594134	153594134	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018489	exon14	c.C6826T	p.R2276X	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153715381	153715381	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018489	exon3	c.C3904T	p.R1302W	.	.	.
YY1AP1	55249	broad.mit.edu	36	1	153896821	153896821	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198901	exon10	c.T1504G	p.L502V	.	.	.
IQGAP3	128239	broad.mit.edu	36	1	154765339	154765339	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178229	exon35	c.G4564A	p.D1522N	.	.	.
INSRR	3645	broad.mit.edu	36	1	155078121	155078121	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014215	exon20	c.T3487C	p.S1163P	.	.	.
PEAR1	375033	broad.mit.edu	36	1	155143284	155143284	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080471	exon6	c.G632T	p.R211I	.	.	.
CD1C	911	broad.mit.edu	36	1	156527576	156527576	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001765	exon2	c.C90A	p.V30V	.	.	.
OR10T2	128360	broad.mit.edu	36	1	156635021	156635021	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004475	exon1	c.C860A	p.P287H	.	.	.
CELA2B	51032	broad.mit.edu	36	1	15681385	15681385	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015849	exon4	c.A266G	p.N89S	.	.	.
OR10X1	128367	broad.mit.edu	36	1	156816040	156816040	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004477	exon1	c.A274G	p.T92A	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156884994	156884994	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003126	exon26	c.C3643A	p.L1215M	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156919835	156919835	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003126	exon3	c.A340G	p.T114A	.	.	.
OR6N1	128372	broad.mit.edu	36	1	157002724	157002724	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005185	exon1	c.G373T	p.A125S	.	.	.
MNDA	4332	broad.mit.edu	36	1	157078592	157078592	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002432	exon2	c.C25A	p.L9I	.	.	.
CADM3	57863	broad.mit.edu	36	1	157429856	157429856	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021189	exon5	c.C504A	p.I168I	.	.	.
APCS	325	broad.mit.edu	36	1	157824762	157824762	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001639	exon2	c.C312T	p.I104I	.	.	.
SLAMF8	56833	broad.mit.edu	36	1	158066414	158066414	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020125	exon2	c.C175T	p.L59F	.	.	.
CASQ1	844	broad.mit.edu	36	1	158437748	158437748	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001231	exon11	c.C1149T	p.G383G	.	.	.
DCAF8	50717	broad.mit.edu	36	1	158459116	158459116	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015726	exon11	c.G1389T	p.E463D	.	.	.
DCAF8	50717	broad.mit.edu	36	1	158476721	158476721	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015726	exon4	c.G113A	p.G38D	.	.	.
RSC1A1	6248	broad.mit.edu	36	1	15859253	15859253	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006511	exon1	c.C303T	p.S101S	.	.	.
CD84	8832	broad.mit.edu	36	1	158787369	158787369	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184882	exon4	c.G499T	p.E167X	.	.	.
CD84	8832	broad.mit.edu	36	1	158802053	158802053	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184881	exon2	c.C153A	p.I51I	.	.	.
PPOX	5498	broad.mit.edu	36	1	159405478	159405478	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000309	exon7	c.C688T	p.R230C	.	.	.
APOA2	336	broad.mit.edu	36	1	159458864	159458864	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001643	exon4	c.C258A	p.F86L	.	.	.
MPZ	4359	broad.mit.edu	36	1	159543300	159543300	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000530	exon3	c.C270T	p.D90D	.	.	.
HSPA6	3310	broad.mit.edu	36	1	159761942	159761942	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002155	exon1	c.C870T	p.F290F	.	.	.
SH2D1B	117157	broad.mit.edu	36	1	160648346	160648346	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053282	exon1	c.C85A	p.L29I	.	.	.
DDR2	4921	broad.mit.edu	36	1	161006899	161006899	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014796	exon13	c.G1477A	p.E493K	.	.	.
SPEN	23013	broad.mit.edu	36	1	16127232	16127232	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015001	exon11	c.G1910A	p.R637Q	.	.	.
FBXO42	54455	broad.mit.edu	36	1	16449900	16449900	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018994	exon10	c.C2006A	p.S669Y	.	.	.
POGK	57645	broad.mit.edu	36	1	165085134	165085134	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017542	exon5	c.C694T	p.R232X	.	.	.
DCAF6	55827	broad.mit.edu	36	1	166202521	166202521	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198956	exon3	c.G190T	p.E64X	.	.	.
TIPRL	261726	broad.mit.edu	36	1	166419874	166419874	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031800	exon2	c.C215T	p.A72V	.	.	.
NBPF1	55672	broad.mit.edu	36	1	16763152	16763152	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017940	exon29	c.G3298T	p.E1100X	.	.	.
C1orf114	57821	broad.mit.edu	36	1	167657692	167657692	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021179	exon3	c.C601A	p.L201I	.	.	.
NBPF1	55672	broad.mit.edu	36	1	16786305	16786305	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017940	exon11	c.A605G	p.D202G	.	.	.
SELE	6401	broad.mit.edu	36	1	167968395	167968395	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000450	exon3	c.G406A	p.A136T	.	.	.
C1orf112	55732	broad.mit.edu	36	1	168059232	168059232	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018186	exon10	c.A843G	p.I281M	.	.	.
GORAB	92344	broad.mit.edu	36	1	168775009	168775009	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146039	exon2	c.G171T	p.K57N	.	.	.
FMO3	2328	broad.mit.edu	36	1	169351981	169351981	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002294	exon8	c.C1193A	p.T398N	.	.	.
BAT2L2	23215	broad.mit.edu	36	1	169822942	169822942	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015172	exon31	c.T7920C	p.I2640I	.	.	.
METTL13	51603	broad.mit.edu	36	1	170019581	170019581	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007239	exon2	c.G232A	p.D78N	.	.	.
DNM3	26052	broad.mit.edu	36	1	170489381	170489381	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015569	exon15	c.C1705T	p.R569W	.	.	.
C1orf9	51430	broad.mit.edu	36	1	170824810	170824810	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014283	exon18	c.G1946A	p.R649Q	.	.	.
TNFSF4	7292	broad.mit.edu	36	1	171422429	171422429	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003326	exon3	c.C401T	p.S134F	.	.	.
SLC9A11	284525	broad.mit.edu	36	1	171769543	171769543	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178527	exon17	c.G1991T	p.R664M	.	.	.
ZBTB37	84614	broad.mit.edu	36	1	172106506	172106506	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122770	exon3	c.C520T	p.R174W	.	.	.
RC3H1	149041	broad.mit.edu	36	1	172183307	172183307	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172071	exon14	c.G2560A	p.D854N	.	.	.
MRPS14	63931	broad.mit.edu	36	1	173254265	173254265	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022100	exon2	c.A116C	p.K39T	.	.	.
TNN	63923	broad.mit.edu	36	1	173313232	173313232	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022093	exon2	c.C55T	p.L19F	.	.	.
TNR	7143	broad.mit.edu	36	1	173591276	173591276	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003285	exon17	c.G3235A	p.D1079N	.	.	.
TNR	7143	broad.mit.edu	36	1	173599505	173599505	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003285	exon13	c.C2669A	p.S890Y	.	.	.
TNR	7143	broad.mit.edu	36	1	173602980	173602980	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003285	exon10	c.G2040T	p.M680I	.	.	.
PADI1	29943	broad.mit.edu	36	1	17424902	17424902	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013358	exon5	c.C418T	p.R140C	.	.	.
PAPPA2	60676	broad.mit.edu	36	1	175001454	175001454	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020318	exon15	c.A4181G	p.D1394G	.	.	.
ASTN1	460	broad.mit.edu	36	1	175260479	175260479	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004319	exon6	c.G1133A	p.R378Q	.	.	.
C1orf49	84066	broad.mit.edu	36	1	176756183	176756183	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170723	exon6	c.G330T	p.K110N	.	.	.
RALGPS2	55103	broad.mit.edu	36	1	177069239	177069239	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152663	exon8	c.G538T	p.E180X	.	.	.
ANGPTL1	9068	broad.mit.edu	36	1	177101394	177101394	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004673	exon3	c.G141T	p.K47N	.	.	.
XPR1	9213	broad.mit.edu	36	1	179039335	179039335	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135669	exon4	c.T412C	p.F138L	.	.	.
MR1	3140	broad.mit.edu	36	1	179284880	179284880	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001531	exon3	c.C137T	p.S46L	.	.	.
CACNA1E	777	broad.mit.edu	36	1	180032509	180032509	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000721	exon46	c.C6162T	p.V2054V	.	.	.
DHX9	1660	broad.mit.edu	36	1	181102289	181102289	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001357	exon13	c.C1420T	p.R474X	.	.	.
DHX9	1660	broad.mit.edu	36	1	181113916	181113916	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001357	exon20	c.G2336A	p.R779Q	.	.	.
LAMC1	3915	broad.mit.edu	36	1	181366224	181366224	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002293	exon19	c.C3403T	p.R1135C	.	.	.
GLT25D2	23127	broad.mit.edu	36	1	182181225	182181225	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015101	exon9	c.C1233T	p.I411I	.	.	.
EDEM3	80267	broad.mit.edu	36	1	182938571	182938571	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025191	exon19	c.C2386T	p.R796X	.	.	.
C1orf26	54823	broad.mit.edu	36	1	183440548	183440548	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105518	exon12	c.C1763A	p.S588Y	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184348687	184348687	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031935	exon72	c.G11110T	p.E3704X	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184381213	184381213	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031935	exon92	c.C14322T	p.N4774N	.	.	.
TPR	7175	broad.mit.edu	36	1	184595594	184595594	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003292	exon12	c.C1349A	p.A450D	.	.	.
TPR	7175	broad.mit.edu	36	1	184610654	184610654	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003292	exon1	c.G130T	p.E44X	.	.	.
PLA2G4A	5321	broad.mit.edu	36	1	185186474	185186474	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024420	exon13	c.G1327A	p.E443K	.	.	.
FAM5C	339479	broad.mit.edu	36	1	188334178	188334178	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199051	exon8	c.C1894T	p.R632C	.	.	.
FAM5C	339479	broad.mit.edu	36	1	188461893	188461893	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199051	exon6	c.G903T	p.E301D	.	.	.
FAM5C	339479	broad.mit.edu	36	1	188500752	188500752	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199051	exon4	c.G484T	p.G162X	.	.	.
RGS21	431704	broad.mit.edu	36	1	190601827	190601827	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039152	exon5	c.G409A	p.V137I	.	.	.
F13B	2165	broad.mit.edu	36	1	195276454	195276454	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001994	exon11	c.G1773T	p.K591N	.	.	.
ASPM	259266	broad.mit.edu	36	1	195339467	195339467	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018136	exon18	c.C5537A	p.S1846Y	.	.	.
ZBTB41	360023	broad.mit.edu	36	1	195435513	195435513	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194314	exon1	c.A714G	p.K238K	.	.	.
CRB1	23418	broad.mit.edu	36	1	195564261	195564261	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201253	exon2	c.G157T	p.D53Y	.	.	.
CRB1	23418	broad.mit.edu	36	1	195564400	195564400	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201253	exon2	c.C296A	p.P99H	.	.	.
CRB1	23418	broad.mit.edu	36	1	195670692	195670692	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201253	exon9	c.T3076G	p.L1026V	.	.	.
DENND1B	163486	broad.mit.edu	36	1	195853462	195853462	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195215	exon11	c.G723A	p.W241X	.	.	.
LHX9	56956	broad.mit.edu	36	1	196157109	196157109	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020204	exon3	c.G430T	p.E144X	.	.	.
PTPRC	5788	broad.mit.edu	36	1	196990064	196990064	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080921	exon29	c.C3064A	p.L1022I	.	.	.
KIF14	9928	broad.mit.edu	36	1	198839660	198839660	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014875	exon9	c.G1793A	p.R598Q	.	.	.
CACNA1S	779	broad.mit.edu	36	1	199313799	199313799	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000069	exon11	c.T1450C	p.Y484H	.	.	.
NAV1	89796	broad.mit.edu	36	1	200018050	200018050	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167738	exon4	c.T614G	p.I205S	.	.	.
TMEM183A	92703	broad.mit.edu	36	1	201251882	201251882	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079809	exon5	c.G699T	p.K233N	.	.	.
SRGAP2	23380	broad.mit.edu	36	1	204670195	204670195	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170637	exon11	c.G1292C	p.R431P	.	.	.
DYRK3	8444	broad.mit.edu	36	1	204887628	204887628	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003582	exon3	c.C462A	p.L154L	.	.	.
IL10	3586	broad.mit.edu	36	1	205010880	205010880	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000572	exon3	c.C373T	p.R125C	.	.	.
CR2	1380	broad.mit.edu	36	1	205706640	205706640	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006658	exon2	c.G205T	p.D69Y	.	.	.
CR2	1380	broad.mit.edu	36	1	205710032	205710032	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006658	exon6	c.A1187G	p.Q396R	.	.	.
CR1	1378	broad.mit.edu	36	1	205746019	205746019	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000651	exon2	c.C269T	p.S90L	.	.	.
IRF6	3664	broad.mit.edu	36	1	208030728	208030728	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006147	exon7	c.C795A	p.L265L	.	.	.
HHAT	55733	broad.mit.edu	36	1	208644488	208644488	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018194	exon6	c.C526T	p.R176C	.	.	.
KCNH1	3756	broad.mit.edu	36	1	209373854	209373854	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002238	exon1	c.G57T	p.E19D	.	.	.
INTS7	25896	broad.mit.edu	36	1	210222655	210222655	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199809	exon8	c.C971A	p.S324Y	.	.	.
FAM71A	149647	broad.mit.edu	36	1	210865271	210865271	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153606	exon1	c.C429T	p.F143F	.	.	.
RPS6KC1	26750	broad.mit.edu	36	1	211480952	211480952	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012424	exon11	c.T1510G	p.S504A	.	.	.
CENPF	1063	broad.mit.edu	36	1	212881451	212881451	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016343	exon12	c.G3147T	p.K1049N	.	.	.
CENPF	1063	broad.mit.edu	36	1	212882531	212882531	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016343	exon12	c.G4227T	p.E1409D	.	.	.
CENPF	1063	broad.mit.edu	36	1	212891816	212891816	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016343	exon15	c.G8124T	p.K2708N	.	.	.
USH2A	7399	broad.mit.edu	36	1	214019933	214019933	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon55	c.C10814A	p.A3605D	.	.	.
USH2A	7399	broad.mit.edu	36	1	214117730	214117730	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon43	c.C8674A	p.L2892I	.	.	.
USH2A	7399	broad.mit.edu	36	1	214128686	214128686	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon41	c.C7928A	p.S2643Y	.	.	.
USH2A	7399	broad.mit.edu	36	1	214205295	214205295	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon37	c.C7107A	p.F2369L	.	.	.
ECE1	1889	broad.mit.edu	36	1	21432688	21432688	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113348	exon14	c.C1572A	p.F524L	.	.	.
USH2A	7399	broad.mit.edu	36	1	214438499	214438499	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon18	c.G3862T	p.E1288X	.	.	.
ECE1	1889	broad.mit.edu	36	1	21444149	21444149	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113348	exon10	c.C1150T	p.R384W	.	.	.
USH2A	7399	broad.mit.edu	36	1	214532209	214532209	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon10	c.G1771T	p.D591Y	.	.	.
USH2A	7399	broad.mit.edu	36	1	214605027	214605027	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon4	c.C675A	p.F225L	.	.	.
USH2A	7399	broad.mit.edu	36	1	214662111	214662111	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon2	c.G191A	p.S64N	.	.	.
TGFB2	7042	broad.mit.edu	36	1	216645179	216645179	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003238	exon2	c.G392A	p.R131Q	.	.	.
TGFB2	7042	broad.mit.edu	36	1	216674092	216674092	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003238	exon3	c.G556A	p.D186N	.	.	.
RAP1GAP	5909	broad.mit.edu	36	1	21816493	21816493	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002885	exon7	c.G184A	p.E62K	.	.	.
IARS2	55699	broad.mit.edu	36	1	218378988	218378988	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018060	exon18	c.C2191T	p.R731C	.	.	.
MARK1	4139	broad.mit.edu	36	1	218893086	218893086	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018650	exon16	c.C1757T	p.A586V	.	.	.
USP48	84196	broad.mit.edu	36	1	21951722	21951722	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032730	exon5	c.G550T	p.E184X	.	.	.
MIA3	375056	broad.mit.edu	36	1	220870237	220870237	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198551	exon4	c.C3052A	p.L1018I	.	.	.
TLR5	7100	broad.mit.edu	36	1	221351584	221351584	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003268	exon6	c.G1413T	p.E471D	.	.	.
SUSD4	55061	broad.mit.edu	36	1	221463383	221463383	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017982	exon8	c.G1275A	p.G425G	.	.	.
CAPN2	824	broad.mit.edu	36	1	222024790	222024790	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001748	exon18	c.G1843A	p.D615N	.	.	.
NVL	4931	broad.mit.edu	36	1	222566172	222566172	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002533	exon5	c.A295C	p.S99R	.	.	.
CDC42BPA	8476	broad.mit.edu	36	1	225453964	225453964	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014826	exon4	c.C367T	p.R123C	.	.	.
SNAP47	116841	broad.mit.edu	36	1	226002066	226002066	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053052	exon2	c.C141T	p.S47S	.	.	.
WNT9A	7483	broad.mit.edu	36	1	226178542	226178542	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003395	exon3	c.G535A	p.V179I	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226538050	226538050	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052843	exon33	c.C8961T	p.C2987C	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226543175	226543175	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052843	exon38	c.T10302G	p.C3434W	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226625347	226625347	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098623	exon94	c.C20245T	p.R6749C	.	.	.
ZBTB40	9923	broad.mit.edu	36	1	22700589	22700589	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014870	exon4	c.C849T	p.F283F	.	.	.
ZBTB40	9923	broad.mit.edu	36	1	22707659	22707659	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014870	exon8	c.C1547A	p.S516Y	.	.	.
CAPN9	10753	broad.mit.edu	36	1	228971620	228971620	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016452	exon6	c.G777A	p.T259T	.	.	.
PCNXL2	80003	broad.mit.edu	36	1	231200712	231200712	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014801	exon32	c.C5699T	p.P1900L	.	.	.
PCNXL2	80003	broad.mit.edu	36	1	231342197	231342197	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014801	exon20	c.G3545T	p.R1182I	.	.	.
PCNXL2	80003	broad.mit.edu	36	1	231380179	231380179	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014801	exon17	c.G3265T	p.D1089Y	.	.	.
PCNXL2	80003	broad.mit.edu	36	1	231464490	231464490	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014801	exon3	c.G404A	p.R135Q	.	.	.
TBCE	6905	broad.mit.edu	36	1	233667264	233667264	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079515	exon12	c.C968T	p.S323L	.	.	.
LYST	1130	broad.mit.edu	36	1	234036621	234036621	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000081	exon6	c.G2438A	p.R813Q	.	.	.
LYST	1130	broad.mit.edu	36	1	234038519	234038519	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000081	exon5	c.G2222A	p.R741K	.	.	.
RYR2	6262	broad.mit.edu	36	1	235599511	235599511	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon6	c.C364T	p.R122C	 RYR2,central_nervous_system,brain,Substitution - Missense,-1 	.	.
RYR2	6262	broad.mit.edu	36	1	235617218	235617218	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon9	c.C591T	p.G197G	.	.	.
RYR2	6262	broad.mit.edu	36	1	235825490	235825490	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon34	c.T4506C	p.N1502N	.	.	.
RYR2	6262	broad.mit.edu	36	1	235844240	235844240	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon37	c.C5189T	p.T1730M	.	.	.
RYR2	6262	broad.mit.edu	36	1	235857951	235857951	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon41	c.C6388T	p.L2130L	.	.	.
RYR2	6262	broad.mit.edu	36	1	235941707	235941707	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon71	c.G10270T	p.E3424X	.	.	.
RYR2	6262	broad.mit.edu	36	1	235962041	235962041	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon78	c.C11008A	p.L3670M	.	.	.
RYR2	6262	broad.mit.edu	36	1	236003538	236003538	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon87	c.A11742G	p.K3914K	.	.	.
RYR2	6262	broad.mit.edu	36	1	236014070	236014070	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon90	c.C12435T	p.I4145I	.	.	.
RYR2	6262	broad.mit.edu	36	1	236018022	236018022	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon92	c.C13440A	p.F4480L	.	.	.
RYR2	6262	broad.mit.edu	36	1	236021365	236021365	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon93	c.G13490A	p.R4497H	.	.	.
RYR2	6262	broad.mit.edu	36	1	236027993	236027993	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon97	c.G13990T	p.D4664Y	.	.	.
ZP4	57829	broad.mit.edu	36	1	236119799	236119799	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021186	exon3	c.G391A	p.D131N	.	.	.
TCEB3	6924	broad.mit.edu	36	1	23955017	23955017	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003198	exon8	c.A1967G	p.Y656C	.	.	.
OPN3	23596	broad.mit.edu	36	1	239827716	239827716	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014322	exon3	c.G900A	p.S300S	.	.	.
C1orf128	57095	broad.mit.edu	36	1	23985457	23985457	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020362	exon5	c.C491T	p.T164M	.	.	.
WDR64	128025	broad.mit.edu	36	1	240020593	240020593	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144625	exon24	c.A2939C	p.K980T	.	.	.
MAP1LC3C	440738	broad.mit.edu	36	1	240228930	240228930	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004343	exon1	c.C4T	p.P2S	.	.	.
PLD5	200150	broad.mit.edu	36	1	240319814	240319814	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195811	exon10	c.G1390T	p.D464Y	.	.	.
FUCA1	2517	broad.mit.edu	36	1	24064602	24064602	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000147	exon2	c.T490A	p.L164M	.	.	.
KIF26B	55083	broad.mit.edu	36	1	243916249	243916249	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018012	exon12	c.C3341T	p.A1114V	.	.	.
AHCTF1	25909	broad.mit.edu	36	1	245107093	245107093	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015446	exon22	c.A2822G	p.D941G	.	.	.
AHCTF1	25909	broad.mit.edu	36	1	245130388	245130388	+	Missense_Mutation	SNP	G	A	A	rs62187567	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015446	exon9	c.C1151T	p.S384L	.	.	.
AHCTF1	25909	broad.mit.edu	36	1	245137615	245137615	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015446	exon5	c.C652T	p.R218C	.	.	.
NLRP3	114548	broad.mit.edu	36	1	245653176	245653176	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004895	exon2	c.C305T	p.S102L	.	.	.
NLRP3	114548	broad.mit.edu	36	1	245674045	245674045	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004895	exon7	c.G2818A	p.D940N	.	.	.
OR2W5	441932	broad.mit.edu	36	1	245721723	245721723	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004698	exon1	c.G671A	p.R224H	.	.	.
OR2T33	391195	broad.mit.edu	36	1	246503507	246503507	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004695	exon1	c.A233G	p.K78R	.	.	.
OR2T33	391195	broad.mit.edu	36	1	246503706	246503706	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004695	exon1	c.C34A	p.L12I	.	.	.
OR2T2	401992	broad.mit.edu	36	1	246683167	246683167	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004136	exon1	c.C446T	p.S149F	.	.	.
TMEM57	55219	broad.mit.edu	36	1	25690641	25690641	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018202	exon10	c.C1771T	p.R591W	.	.	.
ZNF593	51042	broad.mit.edu	36	1	26369536	26369536	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015871	exon2	c.C241T	p.R81X	.	.	.
CCDC21	64793	broad.mit.edu	36	1	26470165	26470165	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022778	exon10	c.C1723T	p.R575X	.	.	.
FGR	2268	broad.mit.edu	36	1	27812116	27812116	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042747	exon13	c.C1486T	p.R496C	.	.	.
STX12	23673	broad.mit.edu	36	1	28018813	28018813	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177424	exon8	c.C715T	p.R239X	.	.	.
DNAJC8	22826	broad.mit.edu	36	1	28428083	28428083	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014280	exon2	c.G117A	p.S39S	.	.	.
PHACTR4	65979	broad.mit.edu	36	1	28672854	28672854	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023923	exon6	c.C1055A	p.S352Y	.	.	.
GMEB1	10691	broad.mit.edu	36	1	28913688	28913688	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006582	exon10	c.G1538A	p.S513N	.	.	.
EPB41	2035	broad.mit.edu	36	1	29186676	29186676	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203343	exon2	c.A140C	p.N47T	.	.	.
PTPRU	10076	broad.mit.edu	36	1	29474708	29474708	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005704	exon8	c.C1306T	p.R436X	.	.	.
LAPTM5	7805	broad.mit.edu	36	1	30983083	30983083	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006762	exon6	c.G561T	p.M187I	.	.	.
PUM1	9698	broad.mit.edu	36	1	31190859	31190859	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001020658	exon18	c.G2915A	p.G972D	.	.	.
PUM1	9698	broad.mit.edu	36	1	31199292	31199292	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001020658	exon15	c.G2447A	p.R816H	.	.	.
TINAGL1	64129	broad.mit.edu	36	1	31823443	31823443	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022164	exon8	c.G962A	p.R321H	.	.	.
COL16A1	1307	broad.mit.edu	36	1	31909803	31909803	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001856	exon48	c.C3150T	p.I1050I	.	.	.
TSSK3	81629	broad.mit.edu	36	1	32601820	32601820	+	Silent	SNP	C	T	T	rs61746387	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052841	exon2	c.C183T	p.I61I	.	.	.
S100PBP	64766	broad.mit.edu	36	1	33064588	33064588	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017406	exon3	c.T301G	p.S101A	.	.	.
PHC2	1912	broad.mit.edu	36	1	33567312	33567312	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198040	exon13	c.C2168T	p.S723L	.	.	.
ZSCAN20	7579	broad.mit.edu	36	1	33717828	33717828	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145238	exon2	c.A352T	p.S118C	.	.	.
ZSCAN20	7579	broad.mit.edu	36	1	33733205	33733205	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145238	exon8	c.A2674C	p.S892R	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33860401	33860401	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052896	exon37	c.A5660G	p.Y1887C	.	.	.
GJA4	2701	broad.mit.edu	36	1	35033006	35033006	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002060	exon2	c.G605A	p.R202H	.	.	.
ZMYM4	9202	broad.mit.edu	36	1	35656658	35656658	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005095	exon29	c.G4337A	p.R1446Q	.	.	.
KIAA0319L	79932	broad.mit.edu	36	1	35689834	35689834	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024874	exon13	c.A2044G	p.N682D	.	.	.
NCDN	23154	broad.mit.edu	36	1	35798957	35798957	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001014841	exon3	c.C567T	p.A189A	.	.	.
EIF2C3	192669	broad.mit.edu	36	1	36281703	36281703	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177422	exon15	c.C1539T	p.F513F	.	.	.
C1orf113	79729	broad.mit.edu	36	1	36557949	36557949	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024676	exon11	c.A765G	p.P255P	.	.	.
MRPS15	64960	broad.mit.edu	36	1	36700339	36700339	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031280	exon3	c.T188C	p.L63P	.	.	.
GRIK3	2899	broad.mit.edu	36	1	37088566	37088566	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000831	exon9	c.C1259T	p.A420V	.	.	.
KIAA0562	9731	broad.mit.edu	36	1	3742940	3742940	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014704	exon10	c.C1296A	p.I432I	.	.	.
EPHA10	284656	broad.mit.edu	36	1	37999667	37999667	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001099439	exon3	c.G847A	p.E283K	.	.	.
SF3A3	10946	broad.mit.edu	36	1	38215148	38215148	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006802	exon12	c.C1000A	p.L334I	.	.	.
RRAGC	64121	broad.mit.edu	36	1	39077825	39077825	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022157	exon7	c.G1187A	p.R396Q	.	.	.
MACF1	23499	broad.mit.edu	36	1	39535895	39535895	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012090	exon22	c.G2387A	p.R796Q	.	.	.
MACF1	23499	broad.mit.edu	36	1	39574082	39574082	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033044	exon1	c.C4555A	p.L1519I	.	.	.
TRIT1	54802	broad.mit.edu	36	1	40086354	40086354	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017646	exon6	c.C706A	p.L236I	.	.	.
RLF	6018	broad.mit.edu	36	1	40433935	40433935	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012421	exon4	c.A519C	p.Q173H	.	.	.
SMAP2	64744	broad.mit.edu	36	1	40652462	40652462	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198979	exon6	c.G519A	p.P173P	.	.	.
NFYC	4802	broad.mit.edu	36	1	40991411	40991411	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014223	exon5	c.G293T	p.R98I	.	.	.
HIVEP3	59269	broad.mit.edu	36	1	41813829	41813829	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024503	exon5	c.C5180T	p.P1727L	.	.	.
ST3GAL3	6487	broad.mit.edu	36	1	44159167	44159167	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174964	exon11	c.C1063T	p.R355C	.	.	.
HECTD3	79654	broad.mit.edu	36	1	45242171	45242171	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024602	exon19	c.T2372C	p.F791S	.	.	.
RAD54L	8438	broad.mit.edu	36	1	46505755	46505755	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142548	exon10	c.A929G	p.Q310R	.	.	.
DMBX1	127343	broad.mit.edu	36	1	46748771	46748771	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172225	exon2	c.G191A	p.R64H	.	.	.
CYP4B1	1580	broad.mit.edu	36	1	47056419	47056419	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099772	exon11	c.G1302T	p.E434D	.	.	.
ELAVL4	1996	broad.mit.edu	36	1	50439282	50439282	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144774	exon7	c.C946T	p.R316C	.	.	.
NRD1	4898	broad.mit.edu	36	1	52048619	52048619	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002525	exon18	c.C2029A	p.L677I	.	.	.
ZFYVE9	9372	broad.mit.edu	36	1	52475984	52475984	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007324	exon4	c.A307G	p.M103V	.	.	.
ORC1	4998	broad.mit.edu	36	1	52640414	52640414	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190818	exon2	c.C70T	p.R24X	.	.	.
ACOT11	26027	broad.mit.edu	36	1	54869080	54869080	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015547	exon16	c.G1715A	p.R572H	.	.	.
C1orf168	199920	broad.mit.edu	36	1	56978973	56978973	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004303	exon13	c.C1688T	p.S563L	.	.	.
C1orf168	199920	broad.mit.edu	36	1	57030988	57030988	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004303	exon2	c.A86C	p.K29T	.	.	.
OMA1	115209	broad.mit.edu	36	1	58719309	58719309	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145243	exon9	c.G1491T	p.K497N	.	.	.
NPHP4	261734	broad.mit.edu	36	1	5930806	5930806	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015102	exon8	c.G903A	p.P301P	.	.	.
FGGY	55277	broad.mit.edu	36	1	59559975	59559975	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018291	exon2	c.G166A	p.E56K	.	.	.
CHD5	26038	broad.mit.edu	36	1	6103804	6103804	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015557	exon33	c.G4860A	p.E1620E	.	.	.
CHD5	26038	broad.mit.edu	36	1	6150892	6150892	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015557	exon2	c.G112T	p.D38Y	.	.	.
INADL	10207	broad.mit.edu	36	1	62009711	62009711	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176877	exon6	c.A545G	p.N182S	.	.	.
ROR1	4919	broad.mit.edu	36	1	64416239	64416239	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005012	exon9	c.G1927A	p.A643T	.	.	.
CACHD1	57685	broad.mit.edu	36	1	64904363	64904363	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020925	exon16	c.C2159A	p.S720Y	.	.	.
JAK1	3716	broad.mit.edu	36	1	65105302	65105302	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002227	exon7	c.A825C	p.E275D	.	.	.
TAS1R1	80835	broad.mit.edu	36	1	6561983	6561983	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177540	exon5	c.A1516G	p.K506E	.	.	.
LEPR	3953	broad.mit.edu	36	1	65874549	65874549	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002303	exon20	c.G2761T	p.D921Y	.	.	.
TCTEX1D1	200132	broad.mit.edu	36	1	66993020	66993020	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152665	exon2	c.C91T	p.R31X	.	.	.
WDR78	79819	broad.mit.edu	36	1	67078826	67078826	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207014	exon9	c.G1408A	p.A470T	.	.	.
RPE65	6121	broad.mit.edu	36	1	68677280	68677280	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000329	exon9	c.C931T	p.L311F	.	.	.
LRRC7	57554	broad.mit.edu	36	1	70277311	70277311	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020794	exon19	c.C3102A	p.F1034L	.	.	.
LRRC7	57554	broad.mit.edu	36	1	70277775	70277775	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020794	exon19	c.T3566G	p.F1189C	.	.	.
LRRC7	57554	broad.mit.edu	36	1	70277949	70277949	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020794	exon19	c.A3740G	p.N1247S	.	.	.
LRRC40	55631	broad.mit.edu	36	1	70397653	70397653	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017768	exon10	c.G1168T	p.E390X	.	.	.
PTGER3	5733	broad.mit.edu	36	1	71250704	71250704	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198715	exon2	c.A949G	p.T317A	.	.	.
C1orf173	127254	broad.mit.edu	36	1	74810760	74810760	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002912	exon14	c.C3222T	p.D1074D	.	.	.
C1orf173	127254	broad.mit.edu	36	1	74811353	74811353	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002912	exon14	c.G2629A	p.E877K	.	.	.
C1orf173	127254	broad.mit.edu	36	1	74838092	74838092	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002912	exon11	c.A1601C	p.K534T	.	.	.
IFI44	10561	broad.mit.edu	36	1	78893355	78893355	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006417	exon4	c.G563A	p.R188Q	.	.	.
ELTD1	64123	broad.mit.edu	36	1	79155910	79155910	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022159	exon12	c.T1746C	p.I582I	.	.	.
ELTD1	64123	broad.mit.edu	36	1	79156240	79156240	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022159	exon11	c.C1545A	p.L515L	.	.	.
LPHN2	23266	broad.mit.edu	36	1	82220096	82220096	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012302	exon17	c.G3079A	p.A1027T	.	.	.
RERE	473	broad.mit.edu	36	1	8348460	8348460	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012102	exon14	c.C1446A	p.F482L	.	.	.
TTLL7	79739	broad.mit.edu	36	1	84149532	84149532	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024686	exon15	c.G1690A	p.E564K	.	.	.
ZNHIT6	54680	broad.mit.edu	36	1	85896214	85896214	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170670	exon10	c.C1159A	p.L387I	.	.	.
ZNHIT6	54680	broad.mit.edu	36	1	85944577	85944577	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170670	exon4	c.C655T	p.R219X	.	.	.
COL24A1	255631	broad.mit.edu	36	1	86363879	86363879	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152890	exon3	c.G728A	p.R243H	.	.	.
ODF2L	57489	broad.mit.edu	36	1	86625262	86625262	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020729	exon2	c.G37T	p.E13X	.	.	.
CLCA2	9635	broad.mit.edu	36	1	86677237	86677237	+	Missense_Mutation	SNP	G	A	A	rs55906076	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006536	exon7	c.G1063A	p.D355N	.	.	.
CLCA4	22802	broad.mit.edu	36	1	86816256	86816256	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012128	exon12	c.C2035T	p.R679W	.	.	.
GBP1	2633	broad.mit.edu	36	1	89293085	89293085	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002053	exon10	c.A1533C	p.R511S	.	.	.
GBP1	2633	broad.mit.edu	36	1	89301437	89301437	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002053	exon2	c.G69A	p.A23A	.	.	.
ZNF644	84146	broad.mit.edu	36	1	91176428	91176428	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201269	exon3	c.G3071A	p.R1024Q	.	.	.
HFM1	164045	broad.mit.edu	36	1	91588991	91588991	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017975	exon18	c.T2098G	p.L700V	.	.	.
HFM1	164045	broad.mit.edu	36	1	91623800	91623800	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017975	exon5	c.C674T	p.A225V	.	.	.
CDC7	8317	broad.mit.edu	36	1	91762388	91762388	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003503	exon12	c.T1533G	p.N511K	.	.	.
TGFBR3	7049	broad.mit.edu	36	1	91933868	91933868	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195683	exon16	c.G2383C	p.V795L	.	.	.
H6PD	9563	broad.mit.edu	36	1	9246690	9246690	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004285	exon5	c.C1551T	p.S517S	.	.	.
EVI5	7813	broad.mit.edu	36	1	92752051	92752051	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005665	exon18	c.T2183C	p.V728A	.	.	.
CCDC18	343099	broad.mit.edu	36	1	93422237	93422237	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206886	exon3	c.C603T	p.N201N	.	.	.
CCDC18	343099	broad.mit.edu	36	1	93452902	93452902	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206886	exon12	c.G1864T	p.D622Y	.	.	.
ABCA4	24	broad.mit.edu	36	1	94300735	94300735	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000350	exon13	c.C1923A	p.C641X	.	.	.
ARHGAP29	9411	broad.mit.edu	36	1	94412520	94412520	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004815	exon23	c.G3279A	p.K1093K	.	.	.
LPPR4	9890	broad.mit.edu	36	1	99526151	99526151	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014839	exon2	c.G265A	p.E89K	.	.	.
C20orf46	55321	broad.mit.edu	36	20	1112423	1112423	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018354	exon1	c.A23C	p.E8A	.	.	.
SPTLC3	55304	broad.mit.edu	36	20	12977742	12977742	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018327	exon2	c.A267C	p.E89D	.	.	.
ISM1	140862	broad.mit.edu	36	20	13227726	13227726	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080826	exon6	c.G1015A	p.D339N	.	.	.
TASP1	55617	broad.mit.edu	36	20	13553845	13553845	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017714	exon3	c.G200A	p.R67Q	.	.	.
NSFL1C	55968	broad.mit.edu	36	20	1374360	1374360	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016143	exon8	c.C901T	p.R301W	.	.	.
SEL1L2	80343	broad.mit.edu	36	20	13798835	13798835	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025229	exon13	c.C1119T	p.G373G	.	.	.
SEL1L2	80343	broad.mit.edu	36	20	13814964	13814964	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025229	exon9	c.T870G	p.F290L	.	.	.
MACROD2	140733	broad.mit.edu	36	20	15814410	15814410	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033087	exon6	c.C24T	p.D8D	.	.	.
KIF16B	55614	broad.mit.edu	36	20	16241037	16241037	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024704	exon25	c.G3738T	p.K1246N	.	.	.
KIF16B	55614	broad.mit.edu	36	20	16308036	16308036	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024704	exon19	c.G2611T	p.E871X	.	.	.
KIF16B	55614	broad.mit.edu	36	20	16308560	16308560	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024704	exon19	c.G2087T	p.R696I	.	.	.
PDYN	5173	broad.mit.edu	36	20	1909534	1909534	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190892	exon3	c.C200A	p.S67Y	.	.	.
SLC24A3	57419	broad.mit.edu	36	20	19582741	19582741	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020689	exon7	c.T648G	p.D216E	.	.	.
CRNKL1	51340	broad.mit.edu	36	20	19968343	19968343	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016652	exon12	c.C1938T	p.F646F	.	.	.
C20orf26	26074	broad.mit.edu	36	20	20003878	20003878	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015585	exon5	c.C417T	p.I139I	.	.	.
STK35	140901	broad.mit.edu	36	20	2045855	2045855	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080836	exon3	c.C1436T	p.A479V	.	.	.
RALGAPA2	57186	broad.mit.edu	36	20	20517981	20517981	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020343	exon18	c.G2370A	p.S790S	.	.	.
XRN2	22803	broad.mit.edu	36	20	21260420	21260420	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012255	exon8	c.G664T	p.D222Y	.	.	.
CD93	22918	broad.mit.edu	36	20	23012959	23012959	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012072	exon1	c.C1871T	p.A624V	.	.	.
CST4	1472	broad.mit.edu	36	20	23617430	23617430	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001899	exon1	c.C177T	p.T59T	.	.	.
C20orf3	57136	broad.mit.edu	36	20	24898205	24898205	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020531	exon7	c.G805T	p.D269Y	.	.	.
NOP56	10528	broad.mit.edu	36	20	2583158	2583158	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006392	exon4	c.G307A	p.A103T	.	.	.
CPXM1	56265	broad.mit.edu	36	20	2727513	2727513	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184699	exon2	c.C199T	p.R67X	.	.	.
VPS16	64601	broad.mit.edu	36	20	2793274	2793274	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080413	exon15	c.A1468T	p.I490F	.	.	.
MYLK2	85366	broad.mit.edu	36	20	29871050	29871050	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033118	exon2	c.G6A	p.A2A	.	.	.
FOXS1	2307	broad.mit.edu	36	20	29896033	29896033	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004118	exon1	c.G974A	p.G325E	.	.	.
TTLL9	164395	broad.mit.edu	36	20	29974445	29974445	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008409	exon8	c.G592A	p.D198N	.	.	.
KIF3B	9371	broad.mit.edu	36	20	30361612	30361612	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004798	exon2	c.A371G	p.D124G	.	.	.
ProSAPiP1	9762	broad.mit.edu	36	20	3094987	3094987	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014731	exon2	c.G479A	p.R160Q	.	.	.
BPIL3	128859	broad.mit.edu	36	20	31084462	31084462	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174897	exon2	c.G109A	p.A37T	.	.	.
C20orf186	149954	broad.mit.edu	36	20	31142218	31142218	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182519	exon8	c.C1095A	p.F365L	.	.	.
SLC4A11	83959	broad.mit.edu	36	20	3158288	3158288	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174090	exon14	c.G1753A	p.A585T	.	.	.
CBFA2T2	9139	broad.mit.edu	36	20	31676463	31676463	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032999	exon6	c.C925T	p.R309C	.	.	.
RALY	22913	broad.mit.edu	36	20	32123645	32123645	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016732	exon3	c.A104C	p.K35T	.	.	.
C20orf194	25943	broad.mit.edu	36	20	3233157	3233157	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009984	exon21	c.T1712G	p.F571C	.	.	.
C20orf194	25943	broad.mit.edu	36	20	3246942	3246942	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009984	exon17	c.G1462T	p.E488X	.	.	.
NCOA6	23054	broad.mit.edu	36	20	32793279	32793279	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014071	exon11	c.C4442A	p.S1481Y	.	.	.
C20orf194	25943	broad.mit.edu	36	20	3303716	3303716	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009984	exon5	c.C466T	p.R156X	.	.	.
CEP250	11190	broad.mit.edu	36	20	33555569	33555569	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007186	exon30	c.G5958A	p.E1986E	.	.	.
RBM39	9584	broad.mit.edu	36	20	33776420	33776420	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004902	exon7	c.G488T	p.R163I	.	.	.
PHF20	51230	broad.mit.edu	36	20	33914702	33914702	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016436	exon6	c.A774C	p.R258S	.	.	.
DSN1	79980	broad.mit.edu	36	20	34832895	34832895	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145318	exon2	c.G102T	p.E34D	.	.	.
C20orf132	140699	broad.mit.edu	36	20	35177020	35177020	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152503	exon18	c.G2506T	p.D836Y	.	.	.
ATRN	8455	broad.mit.edu	36	20	3572865	3572865	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139321	exon28	c.T4115G	p.F1372C	.	.	.
TGM2	7052	broad.mit.edu	36	20	36192133	36192133	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004613	exon13	c.C1966T	p.P656S	.	.	.
TGM2	7052	broad.mit.edu	36	20	36201423	36201423	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198951	exon9	c.G1147A	p.D383N	.	.	.
RALGAPB	57148	broad.mit.edu	36	20	36594838	36594838	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020336	exon15	c.A2167C	p.S723R	.	.	.
SLC32A1	140679	broad.mit.edu	36	20	36789691	36789691	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080552	exon2	c.C573T	p.N191N	.	.	.
LPIN3	64900	broad.mit.edu	36	20	39407860	39407860	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022896	exon2	c.G3T	p.M1I	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40142966	40142966	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133170	exon32	c.C4350T	p.Y1450Y	.	.	.
L3MBTL1	26013	broad.mit.edu	36	20	41590738	41590738	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032107	exon8	c.C824T	p.S275L	.	.	.
MYBL2	4605	broad.mit.edu	36	20	41777312	41777312	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002466	exon13	c.G1949A	p.R650Q	.	.	.
TOX2	84969	broad.mit.edu	36	20	42116520	42116520	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032883	exon6	c.C693T	p.F231F	.	.	.
C20orf111	51526	broad.mit.edu	36	20	42265061	42265061	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016470	exon3	c.G145T	p.D49Y	.	.	.
PABPC1L	80336	broad.mit.edu	36	20	42972364	42972364	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001124756	exon1	c.T166C	p.Y56H	.	.	.
WFDC8	90199	broad.mit.edu	36	20	43620993	43620993	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130896	exon3	c.G189A	p.P63P	.	.	.
UBE2C	11065	broad.mit.edu	36	20	43877744	43877744	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181801	exon4	c.T257C	p.L86P	.	.	.
ZSWIM1	90204	broad.mit.edu	36	20	43944655	43944655	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080603	exon2	c.A17C	p.K6T	.	.	.
NCOA5	57727	broad.mit.edu	36	20	44132323	44132323	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020967	exon3	c.C298T	p.R100X	.	.	.
ZNF334	55713	broad.mit.edu	36	20	44563526	44563526	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018102	exon5	c.G1859T	p.R620I	.	.	.
EYA2	2139	broad.mit.edu	36	20	45205113	45205113	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172110	exon10	c.G897A	p.T299T	.	.	.
ZMYND8	23613	broad.mit.edu	36	20	45308663	45308663	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012408	exon14	c.A1780C	p.N594H	.	.	.
ARFGEF2	10564	broad.mit.edu	36	20	47075329	47075329	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006420	exon36	c.C4828T	p.H1610Y	.	.	.
DDX27	55661	broad.mit.edu	36	20	47276409	47276409	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017895	exon7	c.G729A	p.P243P	.	.	.
ZNFX1	57169	broad.mit.edu	36	20	47320530	47320530	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021035	exon3	c.G1226A	p.R409Q	.	.	.
KCNB1	3745	broad.mit.edu	36	20	47424481	47424481	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004975	exon2	c.C1023T	p.G341G	.	.	.
ATP9A	10079	broad.mit.edu	36	20	49720038	49720038	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006045	exon13	c.G1198A	p.E400K	.	.	.
TSHZ2	128553	broad.mit.edu	36	20	51304723	51304723	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173485	exon2	c.C1319A	p.S440Y	.	.	.
TSHZ2	128553	broad.mit.edu	36	20	51304960	51304960	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173485	exon2	c.C1556A	p.S519Y	.	.	.
BCAS1	8537	broad.mit.edu	36	20	52108643	52108643	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003657	exon2	c.C22A	p.P8T	.	.	.
CYP24A1	1591	broad.mit.edu	36	20	52212795	52212795	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000782	exon7	c.C858T	p.I286I	.	.	.
BMP7	655	broad.mit.edu	36	20	55236786	55236786	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001719	exon2	c.G517A	p.E173K	.	.	.
BMP7	655	broad.mit.edu	36	20	55274195	55274195	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001719	exon1	c.G391A	p.D131N	.	.	.
SPO11	23626	broad.mit.edu	36	20	55343242	55343242	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012444	exon6	c.C540T	p.G180G	.	.	.
CTCFL	140690	broad.mit.edu	36	20	55523117	55523117	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080618	exon7	c.G1267A	p.E423K	.	.	.
PHACTR3	116154	broad.mit.edu	36	20	57782804	57782804	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080672	exon7	c.C1038T	p.D346D	.	.	.
PHACTR3	116154	broad.mit.edu	36	20	57849927	57849927	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080672	exon11	c.C1529T	p.A510V	.	.	.
SYCP2	10388	broad.mit.edu	36	20	57903989	57903989	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014258	exon19	c.G1563T	p.E521D	.	.	.
SYCP2	10388	broad.mit.edu	36	20	57909227	57909227	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014258	exon16	c.G1224A	p.S408S	.	.	.
CDH26	60437	broad.mit.edu	36	20	58005102	58005102	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177980	exon13	c.G1910A	p.R637Q	.	.	.
TAF4	6874	broad.mit.edu	36	20	60009009	60009009	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003185	exon10	c.G2650T	p.E884X	.	.	.
FERMT1	55612	broad.mit.edu	36	20	6017618	6017618	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017671	exon10	c.C1258A	p.L420I	.	.	.
EEF1A2	1917	broad.mit.edu	36	20	61597688	61597688	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001958	exon3	c.G289A	p.D97N	.	.	.
ZNF512B	57473	broad.mit.edu	36	20	62068214	62068214	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020713	exon5	c.C758T	p.P253L	.	.	.
OPRL1	4987	broad.mit.edu	36	20	62194721	62194721	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182647	exon3	c.G204T	p.G68G	.	.	.
MYT1	4661	broad.mit.edu	36	20	62323840	62323840	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004535	exon14	c.C2392T	p.L798F	.	.	.
HAO1	54363	broad.mit.edu	36	20	7842842	7842842	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017545	exon3	c.C514T	p.R172C	.	.	.
PLCB1	23236	broad.mit.edu	36	20	8578046	8578046	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182734	exon7	c.C544T	p.R182W	.	.	.
RSPO4	343637	broad.mit.edu	36	20	896663	896663	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029871	exon2	c.C198T	p.Y66Y	.	.	.
PLCB4	5332	broad.mit.edu	36	20	9339729	9339729	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000933	exon21	c.C2009T	p.S670L	.	.	.
LIPI	149998	broad.mit.edu	36	21	14483265	14483265	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198996	exon2	c.A456C	p.K152N	.	.	.
LIPI	149998	broad.mit.edu	36	21	14483568	14483568	+	De_novo_Start_OutOfFrame	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198996	exon2	c.G153T	p.K51N	.	.	.
USP25	29761	broad.mit.edu	36	21	16118312	16118312	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013396	exon11	c.A1164C	p.K388N	.	.	.
CHODL	140578	broad.mit.edu	36	21	18554451	18554451	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024944	exon4	c.A611C	p.Q204P	.	.	.
NCAM2	4685	broad.mit.edu	36	21	21803225	21803225	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004540	exon16	c.G2260A	p.E754K	.	.	.
MRPL39	54148	broad.mit.edu	36	21	25894023	25894023	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017446	exon5	c.G547A	p.V183I	.	.	.
ADAMTS5	11096	broad.mit.edu	36	21	27228875	27228875	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007038	exon4	c.C1470A	p.T490T	.	.	.
RWDD2B	10069	broad.mit.edu	36	21	29300808	29300808	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016940	exon5	c.G761A	p.R254H	.	.	.
BACH1	571	broad.mit.edu	36	21	29620810	29620810	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206866	exon3	c.G794A	p.G265E	.	.	.
GRIK1	2897	broad.mit.edu	36	21	29849394	29849394	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175611	exon15	c.C2412T	p.C804C	.	.	.
KRTAP13-1	140258	broad.mit.edu	36	21	30690586	30690586	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181599	exon1	c.C311T	p.S104F	.	.	.
KRTAP19-7	337974	broad.mit.edu	36	21	30855426	30855426	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181614	exon1	c.C54T	p.F18F	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31476759	31476759	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003253	exon16	c.G2737T	p.D913Y	.	.	.
SFRS15	57466	broad.mit.edu	36	21	31966016	31966016	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145444	exon19	c.C2966A	p.S989Y	.	.	.
C21orf63	59271	broad.mit.edu	36	21	32809151	32809151	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058187	exon8	c.A1106G	p.E369G	.	.	.
SYNJ1	8867	broad.mit.edu	36	21	32939185	32939185	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003895	exon26	c.G3511A	p.A1171T	.	.	.
SYNJ1	8867	broad.mit.edu	36	21	32960149	32960149	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003895	exon17	c.T2237G	p.I746R	.	.	.
C21orf62	56245	broad.mit.edu	36	21	33088227	33088227	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001162495	exon4	c.C376T	p.R126C	.	.	.
DONSON	29980	broad.mit.edu	36	21	33878801	33878801	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017613	exon4	c.T750C	p.N250N	.	.	.
CLIC6	54102	broad.mit.edu	36	21	35001508	35001508	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053277	exon2	c.C1435A	p.L479I	.	.	.
CHAF1B	8208	broad.mit.edu	36	21	36703549	36703549	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005441	exon10	c.G835A	p.A279T	.	.	.
HLCS	3141	broad.mit.edu	36	21	37224516	37224516	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000411	exon6	c.G1084A	p.E362K	.	.	.
KCNJ15	3772	broad.mit.edu	36	21	38593687	38593687	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_170736	exon3	c.C634T	p.L212F	.	.	.
BRWD1	54014	broad.mit.edu	36	21	39493360	39493360	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033656	exon40	c.C4852A	p.L1618I	.	.	.
BRWD1	54014	broad.mit.edu	36	21	39589545	39589545	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033656	exon7	c.C603A	p.I201I	.	.	.
LCA5L	150082	broad.mit.edu	36	21	39700343	39700343	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152505	exon10	c.G1348T	p.D450Y	.	.	.
LCA5L	150082	broad.mit.edu	36	21	39716834	39716834	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152505	exon5	c.G775T	p.E259X	.	.	.
DSCAM	1826	broad.mit.edu	36	21	40480937	40480937	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001389	exon14	c.A2770C	p.N924H	.	.	.
ZNF295	49854	broad.mit.edu	36	21	42284855	42284855	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098403	exon4	c.G1816A	p.E606K	.	.	.
TRAPPC10	7109	broad.mit.edu	36	21	44276440	44276440	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003274	exon2	c.G108A	p.T36T	.	.	.
PCNT	5116	broad.mit.edu	36	21	46597632	46597632	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006031	exon10	c.C1643T	p.A548V	.	.	.
TPTE	7179	broad.mit.edu	36	21	9973296	9973296	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199259	exon9	c.T233C	p.L78P	.	.	.
CCT8L2	150160	broad.mit.edu	36	22	15451874	15451874	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014406	exon1	c.G1567A	p.A523T	.	.	.
DGCR14	8220	broad.mit.edu	36	22	17504937	17504937	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022719	exon8	c.G934A	p.E312K	.	.	.
CLTCL1	8218	broad.mit.edu	36	22	17555222	17555222	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007098	exon29	c.G4453A	p.D1485N	.	.	.
CLTCL1	8218	broad.mit.edu	36	22	17587480	17587480	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001835	exon18	c.C2833T	p.R945C	.	.	.
ZNF74	7625	broad.mit.edu	36	22	19084976	19084976	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003426	exon3	c.C175A	p.Q59K	.	.	.
PI4KA	5297	broad.mit.edu	36	22	19403103	19403103	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002650	exon12	c.C1380T	p.I460I	.	.	.
PI4KA	5297	broad.mit.edu	36	22	19483532	19483532	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058004	exon16	c.G1679A	p.R560Q	.	.	.
AIFM3	150209	broad.mit.edu	36	22	19660733	19660733	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001146288	exon11	c.G954T	p.E318D	.	.	.
TOP3B	8940	broad.mit.edu	36	22	20646802	20646802	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003935	exon13	c.C1524T	p.I508I	.	.	.
ZNF280A	129025	broad.mit.edu	36	22	21198880	21198880	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080740	exon2	c.G1075A	p.A359T	.	.	.
C22orf43	51233	broad.mit.edu	36	22	22286329	22286329	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016449	exon9	c.A614C	p.D205A	.	.	.
CABIN1	23523	broad.mit.edu	36	22	22813552	22813552	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199281	exon23	c.C3411T	p.S1137S	.	.	.
ADORA2A	135	broad.mit.edu	36	22	23166613	23166613	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000675	exon3	c.C395T	p.S132L	.	.	.
UPB1	51733	broad.mit.edu	36	22	23226223	23226223	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016327	exon2	c.G253A	p.A85T	.	.	.
PIWIL3	440822	broad.mit.edu	36	22	23453944	23453944	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008496	exon16	c.T2009G	p.V670G	.	.	.
PIWIL3	440822	broad.mit.edu	36	22	23475393	23475393	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008496	exon11	c.G1312T	p.E438X	.	.	.
PIWIL3	440822	broad.mit.edu	36	22	23488424	23488424	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008496	exon2	c.C43T	p.R15C	.	.	.
SGSM1	129049	broad.mit.edu	36	22	23645953	23645953	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098497	exon24	c.C3186A	p.F1062L	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24494278	24494278	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032608	exon4	c.G395A	p.G132D	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24573488	24573488	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032608	exon20	c.A3644T	p.E1215V	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24752611	24752611	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032608	exon43	c.C6671A	p.A2224D	.	.	.
SEZ6L	23544	broad.mit.edu	36	22	25018897	25018897	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184776	exon2	c.C620T	p.S207L	.	.	.
TFIP11	24144	broad.mit.edu	36	22	25222044	25222044	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012143	exon12	c.A1844G	p.K615R	.	.	.
EMID1	129080	broad.mit.edu	36	22	27959457	27959457	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133455	exon9	c.G913A	p.G305S	.	.	.
LIMK2	3985	broad.mit.edu	36	22	29993853	29993853	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005569	exon10	c.A1220G	p.Y407C	.	.	.
SFI1	9814	broad.mit.edu	36	22	30254836	30254836	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014775	exon3	c.G253T	p.E85X	.	.	.
C22orf24	25775	broad.mit.edu	36	22	30663978	30663978	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015372	exon2	c.G75T	p.K25N	.	.	.
RFPL2	10739	broad.mit.edu	36	22	30916804	30916804	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159545	exon4	c.C822T	p.N274N	.	.	.
LARGE	9215	broad.mit.edu	36	22	32009274	32009274	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133642	exon13	c.C1791T	p.F597F	.	.	.
RBFOX2	23543	broad.mit.edu	36	22	34494283	34494283	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001082579	exon6	c.A720G	p.L240L	.	.	.
APOL3	80833	broad.mit.edu	36	22	34867465	34867465	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145641	exon5	c.G338A	p.R113Q	.	.	.
MYH9	4627	broad.mit.edu	36	22	35010493	35010493	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002473	exon39	c.G5494A	p.A1832T	.	.	.
MYH9	4627	broad.mit.edu	36	22	35025029	35025029	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002473	exon24	c.G2982T	p.K994N	.	.	.
EIF3D	8664	broad.mit.edu	36	22	35249264	35249264	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003753	exon6	c.C403T	p.R135X	.	.	.
GTPBP1	9567	broad.mit.edu	36	22	37442852	37442852	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004286	exon4	c.G735A	p.T245T	.	.	.
NPTXR	23467	broad.mit.edu	36	22	37548644	37548644	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014293	exon5	c.T1419C	p.L473L	.	.	.
APOBEC3C	27350	broad.mit.edu	36	22	37744300	37744300	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014508	exon4	c.C535T	p.R179X	.	.	.
APOBEC3F	200316	broad.mit.edu	36	22	37769029	37769029	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145298	exon2	c.C159A	p.I53I	.	.	.
MCHR1	2847	broad.mit.edu	36	22	39407700	39407700	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005297	exon2	c.C1091T	p.A364V	.	.	.
ACO2	50	broad.mit.edu	36	22	40237840	40237840	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098	exon4	c.A447C	p.E149D	.	.	.
PMM1	5372	broad.mit.edu	36	22	40304808	40304808	+	Silent	SNP	G	A	A	rs999980	byHapMap	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002676	exon6	c.C498T	p.F166F	.	.	.
TCF20	6942	broad.mit.edu	36	22	40894642	40894642	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005650	exon4	c.G5844A	p.A1948A	.	.	.
TCF20	6942	broad.mit.edu	36	22	40937700	40937700	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005650	exon1	c.G3556T	p.E1186X	.	.	.
A4GALT	53947	broad.mit.edu	36	22	41418930	41418930	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017436	exon3	c.G972A	p.T324T	.	.	.
MPPED1	758	broad.mit.edu	36	22	42161048	42161048	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001044370	exon3	c.G375A	p.P125P	.	.	.
PNPLA3	80339	broad.mit.edu	36	22	42654366	42654366	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025225	exon2	c.G406T	p.D136Y	.	.	.
PNPLA3	80339	broad.mit.edu	36	22	42667262	42667262	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025225	exon7	c.C1036T	p.L346L	.	.	.
KIAA1644	85352	broad.mit.edu	36	22	43012876	43012876	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099294	exon4	c.G364A	p.A122T	.	.	.
PKDREJ	10343	broad.mit.edu	36	22	45033551	45033551	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006071	exon1	c.A4333C	p.T1445P	.	.	.
PKDREJ	10343	broad.mit.edu	36	22	45035419	45035419	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006071	exon1	c.C2465A	p.S822Y	.	.	.
BRD1	23774	broad.mit.edu	36	22	48554025	48554025	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014577	exon12	c.G3037A	p.E1013K	.	.	.
MLC1	23209	broad.mit.edu	36	22	48842167	48842167	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015166	exon12	c.G1106A	p.R369K	.	.	.
MOV10L1	54456	broad.mit.edu	36	22	48889325	48889325	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164104	exon5	c.T668C	p.V223A	.	.	.
MOV10L1	54456	broad.mit.edu	36	22	48941379	48941379	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164105	exon25	c.C3400T	p.R1134X	.	.	.
CPT1B	1375	broad.mit.edu	36	22	49358975	49358975	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152246	exon10	c.G1006A	p.A336T	.	.	.
COL3A1	1281	broad.mit.edu	36	2	189577000	189577001	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000090	exon39	c.2709_2710insC	p.G903fs	.	.	.
MYO7B	4648	broad.mit.edu	36	2	128111347	128111348	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
LONRF2	164832	broad.mit.edu	36	2	100267202	100267202	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198461	exon12	c.G2255T	p.R752I	.	.	.
CHST10	9486	broad.mit.edu	36	2	100376633	100376633	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004854	exon7	c.G577A	p.E193K	.	.	.
TBC1D8	11138	broad.mit.edu	36	2	100990993	100990993	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102426	exon20	c.C3145T	p.R1049W	.	.	.
IL1R1	3554	broad.mit.edu	36	2	102147841	102147841	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000877	exon3	c.G237T	p.E79D	.	.	.
IL1RL2	8808	broad.mit.edu	36	2	102172082	102172082	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003854	exon3	c.A173C	p.K58T	.	.	.
IL1RL1	9173	broad.mit.edu	36	2	102334723	102334723	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016232	exon11	c.C1581T	p.F527F	.	.	.
IL18RAP	8807	broad.mit.edu	36	2	102434815	102434815	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003853	exon12	c.C1542A	p.F514L	.	.	.
TGFBRAP1	9392	broad.mit.edu	36	2	105263321	105263321	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004257	exon6	c.G1413T	p.E471D	.	.	.
GCC2	9648	broad.mit.edu	36	2	108453978	108453978	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181453	exon6	c.A1761G	p.G587G	.	.	.
GCC2	9648	broad.mit.edu	36	2	108458500	108458500	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181453	exon8	c.G2938T	p.E980X	.	.	.
RANBP2	5903	broad.mit.edu	36	2	108747400	108747400	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006267	exon20	c.G3973T	p.E1325X	.	.	.
SH3RF3	344558	broad.mit.edu	36	2	109415428	109415428	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099289	exon6	c.C1443T	p.D481D	.	.	.
SH3RF3	344558	broad.mit.edu	36	2	109616368	109616368	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099289	exon9	c.C2157T	p.R719R	.	.	.
SEPT10	151011	broad.mit.edu	36	2	109661043	109661043	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178584	exon9	c.G1153T	p.E385X	.	.	.
NPHP1	4867	broad.mit.edu	36	2	110319766	110319766	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128178	exon1	c.G69T	p.Q23H	.	.	.
ACOXL	55289	broad.mit.edu	36	2	111268213	111268213	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142807	exon5	c.C336A	p.L112L	.	.	.
ANAPC1	64682	broad.mit.edu	36	2	112308914	112308914	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022662	exon19	c.G2122A	p.E708K	.	.	.
ANAPC1	64682	broad.mit.edu	36	2	112332426	112332426	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022662	exon11	c.A1286C	p.K429T	.	.	.
ZC3H6	376940	broad.mit.edu	36	2	112796938	112796938	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198581	exon9	c.A1328C	p.K443T	.	.	.
IL1F7	27178	broad.mit.edu	36	2	113391190	113391190	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173205	exon2	c.G81T	p.K27N	.	.	.
IL1F6	27179	broad.mit.edu	36	2	113481970	113481970	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014440	exon4	c.G355A	p.E119K	.	.	.
SNTG2	54221	broad.mit.edu	36	2	1158827	1158827	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018968	exon8	c.C549A	p.L183L	.	.	.
GREB1	9687	broad.mit.edu	36	2	11660004	11660004	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014668	exon17	c.A2551C	p.N851H	.	.	.
DDX18	8886	broad.mit.edu	36	2	118295225	118295225	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006773	exon4	c.C533T	p.S178L	.	.	.
PTPN4	5775	broad.mit.edu	36	2	120431110	120431110	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002830	exon22	c.C2120T	p.A707V	.	.	.
GLI2	2736	broad.mit.edu	36	2	121456764	121456764	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005270	exon10	c.C1521T	p.F507F	.	.	.
CLASP1	23332	broad.mit.edu	36	2	121884916	121884916	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142274	exon23	c.C2312T	p.A771V	.	.	.
CNTNAP5	129684	broad.mit.edu	36	2	124948844	124948844	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130773	exon7	c.T977A	p.F326Y	.	.	.
CNTNAP5	129684	broad.mit.edu	36	2	125238095	125238095	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130773	exon16	c.T2431G	p.F811V	.	.	.
CNTNAP5	129684	broad.mit.edu	36	2	125264067	125264067	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130773	exon18	c.C2868T	p.C956C	.	.	.
SAP130	79595	broad.mit.edu	36	2	128463692	128463692	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145928	exon13	c.C1774A	p.H592N	.	.	.
ARHGEF4	50649	broad.mit.edu	36	2	131517612	131517612	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015320	exon11	c.A1585G	p.I529V	.	.	.
PLEKHB2	55041	broad.mit.edu	36	2	131599927	131599927	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017958	exon3	c.C169T	p.R57C	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133257004	133257004	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207363	exon14	c.G3850T	p.D1284Y	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133258186	133258186	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207363	exon14	c.A2668G	p.S890G	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133352904	133352904	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207481	exon9	c.G635A	p.R212Q	.	.	.
YSK4	80122	broad.mit.edu	36	2	135460483	135460483	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025052	exon7	c.T2429C	p.V810A	.	.	.
YSK4	80122	broad.mit.edu	36	2	135461680	135461680	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025052	exon7	c.G1232T	p.R411I	.	.	.
ZRANB3	84083	broad.mit.edu	36	2	135681644	135681644	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032143	exon19	c.C2839T	p.R947X	.	.	.
LCT	3938	broad.mit.edu	36	2	136286512	136286512	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002299	exon7	c.G2192A	p.G731E	.	.	.
LCT	3938	broad.mit.edu	36	2	136291388	136291388	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002299	exon6	c.C1700A	p.S567Y	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140707254	140707254	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon91	c.G13771T	p.E4591X	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141536226	141536226	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon8	c.C1100A	p.S367X	.	.	.
GTDC1	79712	broad.mit.edu	36	2	144481458	144481458	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164629	exon7	c.G636T	p.E212D	.	.	.
MBD5	55777	broad.mit.edu	36	2	148957404	148957404	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018328	exon10	c.C2774A	p.S925Y	.	.	.
KIF5C	3800	broad.mit.edu	36	2	149526755	149526755	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004522	exon10	c.C921A	p.V307V	.	.	.
KIF5C	3800	broad.mit.edu	36	2	149565216	149565216	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004522	exon19	c.G2172A	p.K724K	.	.	.
NEB	4703	broad.mit.edu	36	2	152056520	152056520	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon179	c.G25073A	p.R8358H	.	.	.
NEB	4703	broad.mit.edu	36	2	152174799	152174799	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon81	c.T12100C	p.C4034R	.	.	.
NEB	4703	broad.mit.edu	36	2	152220041	152220041	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164507	exon51	c.C6796T	p.L2266L	.	.	.
NEB	4703	broad.mit.edu	36	2	152231110	152231110	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon41	c.C4771A	p.L1591I	.	.	.
NEB	4703	broad.mit.edu	36	2	152256653	152256653	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon23	c.G2182T	p.A728S	.	.	.
NEB	4703	broad.mit.edu	36	2	152256911	152256911	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon22	c.T2014G	p.L672V	.	.	.
GPD2	2820	broad.mit.edu	36	2	157075583	157075583	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083112	exon4	c.G304T	p.D102Y	.	.	.
GALNT5	11227	broad.mit.edu	36	2	157823517	157823517	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014568	exon1	c.G677A	p.R226K	.	.	.
GALNT5	11227	broad.mit.edu	36	2	157850832	157850832	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014568	exon3	c.C1681T	p.R561C	.	.	.
ERMN	57471	broad.mit.edu	36	2	157886331	157886331	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020711	exon3	c.G553T	p.E185X	.	.	.
CYTIP	9595	broad.mit.edu	36	2	157992129	157992129	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004288	exon6	c.G526A	p.A176T	.	.	.
PKP4	8502	broad.mit.edu	36	2	159228061	159228061	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003628	exon15	c.C2435T	p.S812L	.	.	.
LY75	4065	broad.mit.edu	36	2	160414880	160414880	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198760	exon23	c.C3007T	p.L1003F	.	.	.
LY75	4065	broad.mit.edu	36	2	160423173	160423173	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198760	exon16	c.T2329C	p.L777L	.	.	.
TANK	10010	broad.mit.edu	36	2	161800136	161800136	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199135	exon8	c.C1139T	p.S380L	.	.	.
DPP4	1803	broad.mit.edu	36	2	162581870	162581870	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001935	exon17	c.G1462T	p.D488Y	.	.	.
DPP4	1803	broad.mit.edu	36	2	162583510	162583510	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001935	exon16	c.G1395A	p.A465A	.	.	.
IFIH1	64135	broad.mit.edu	36	2	162852909	162852909	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022168	exon5	c.T1077G	p.V359V	.	.	.
COBLL1	22837	broad.mit.edu	36	2	165259590	165259590	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014900	exon12	c.T2672G	p.F891C	.	.	.
SCN3A	6328	broad.mit.edu	36	2	165655219	165655219	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006922	exon28	c.G5690A	p.R1897H	.	.	.
SCN3A	6328	broad.mit.edu	36	2	165692480	165692480	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006922	exon18	c.C3300T	p.T1100T	.	.	.
SCN3A	6328	broad.mit.edu	36	2	165719240	165719240	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006922	exon11	c.G1348A	p.E450K	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165878484	165878484	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040143	exon8	c.G1143T	p.M381I	.	.	.
FAM49A	81553	broad.mit.edu	36	2	16606882	16606882	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030797	exon6	c.C307A	p.L103I	.	.	.
CSRNP3	80034	broad.mit.edu	36	2	166244273	166244273	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172173	exon7	c.G1522A	p.E508K	.	.	.
TTC21B	79809	broad.mit.edu	36	2	166476110	166476110	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024753	exon18	c.C2434A	p.L812I	.	.	.
SCN1A	6323	broad.mit.edu	36	2	166556417	166556417	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165964	exon26	c.A5530G	p.T1844A	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166793511	166793511	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002977	exon22	c.G4109A	p.R1370Q	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166853253	166853253	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002977	exon10	c.G1254A	p.Q418Q	.	.	.
SCN7A	6332	broad.mit.edu	36	2	167030603	167030603	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002976	exon7	c.C805T	p.R269X	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167468242	167468242	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199143	exon2	c.T4G	p.F2V	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167807969	167807969	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199144	exon7	c.A1155C	p.E385D	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167810460	167810460	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199144	exon7	c.A3646G	p.T1216A	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167810889	167810889	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199144	exon7	c.C4075T	p.R1359X	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167812220	167812220	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199144	exon7	c.C5406G	p.G1802G	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167814333	167814333	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199144	exon7	c.T7519G	p.Y2507D	.	.	.
STK39	27347	broad.mit.edu	36	2	168628268	168628268	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013233	exon14	c.T1364C	p.V455A	.	.	.
STK39	27347	broad.mit.edu	36	2	168705469	168705469	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013233	exon6	c.G674A	p.R225Q	.	.	.
ABCB11	8647	broad.mit.edu	36	2	169497233	169497233	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003742	exon24	c.C3113T	p.T1038I	.	.	.
ABCB11	8647	broad.mit.edu	36	2	169501172	169501172	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003742	exon22	c.C2628T	p.I876I	.	.	.
ABCB11	8647	broad.mit.edu	36	2	169534872	169534872	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003742	exon15	c.C1738A	p.L580M	.	.	.
LRP2	4036	broad.mit.edu	36	2	169771803	169771803	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon39	c.C6673T	p.R2225X	.	.	.
FASTKD1	79675	broad.mit.edu	36	2	170119944	170119944	+	Nonsense_Mutation	SNP	C	A	A	rs12618227	byCluster;byFrequency	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024622	exon7	c.G1150T	p.E384X	.	.	.
FASTKD1	79675	broad.mit.edu	36	2	170125398	170125398	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024622	exon5	c.G716A	p.R239Q	.	.	.
FASTKD1	79675	broad.mit.edu	36	2	170136691	170136691	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024622	exon2	c.G95A	p.R32Q	.	.	.
KLHL23	151230	broad.mit.edu	36	2	170300934	170300934	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199290	exon4	c.C1164A	p.F388L	.	.	.
GAD1	2571	broad.mit.edu	36	2	171410802	171410802	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000817	exon10	c.C985A	p.L329I	.	.	.
METTL8	79828	broad.mit.edu	36	2	171896576	171896576	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024770	exon6	c.C704T	p.A235V	.	.	.
ITGA6	3655	broad.mit.edu	36	2	173042207	173042207	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000210	exon4	c.G496A	p.D166N	.	.	.
RAPGEF4	11069	broad.mit.edu	36	2	173563831	173563831	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007023	exon15	c.C1422A	p.V474V	 RAPGEF4,central_nervous_system,brain,Substitution - Missense,+2 	.	.
ZAK	51776	broad.mit.edu	36	2	173805359	173805359	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016653	exon14	c.C1129T	p.R377W	.	.	.
CHRNA1	1134	broad.mit.edu	36	2	175321590	175321590	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000079	exon8	c.C1206T	p.I402I	.	.	.
TTC30B	150737	broad.mit.edu	36	2	178124634	178124634	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152517	exon1	c.C1104T	p.C368C	.	.	.
TTC30B	150737	broad.mit.edu	36	2	178125208	178125208	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152517	exon1	c.T530G	p.F177C	.	.	.
TTC30A	92104	broad.mit.edu	36	2	178190947	178190947	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152275	exon1	c.A729C	p.L243F	.	.	.
GEN1	348654	broad.mit.edu	36	2	17826073	17826073	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130009	exon14	c.G2113T	p.E705X	.	.	.
PDE11A	50940	broad.mit.edu	36	2	178471040	178471040	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077197	exon5	c.C543T	p.I181I	.	.	.
OSBPL6	114880	broad.mit.edu	36	2	178962060	178962060	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032523	exon21	c.T2235C	p.H745H	.	.	.
TTN	7273	broad.mit.edu	36	2	179107486	179107486	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon186	c.C74906T	p.S24969L	.	.	.
TTN	7273	broad.mit.edu	36	2	179112546	179112546	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon180	c.A71296G	p.T23766A	.	.	.
TTN	7273	broad.mit.edu	36	2	179127076	179127076	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon161	c.C61812A	p.S20604S	.	.	.
TTN	7273	broad.mit.edu	36	2	179136074	179136074	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon154	c.C55835T	p.S18612L	.	.	.
TTN	7273	broad.mit.edu	36	2	179150301	179150301	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon152	c.T41811C	p.L13937L	.	.	.
TTN	7273	broad.mit.edu	36	2	179156789	179156789	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon140	c.T38170C	p.L12724L	.	.	.
TTN	7273	broad.mit.edu	36	2	179159634	179159634	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon136	c.C37044T	p.I12348I	.	.	.
TTN	7273	broad.mit.edu	36	2	179161847	179161847	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon132	c.G35655T	p.Q11885H	.	.	.
TTN	7273	broad.mit.edu	36	2	179177692	179177692	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon109	c.G27174T	p.E9058D	.	.	.
TTN	7273	broad.mit.edu	36	2	179177819	179177819	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon109	c.C27047A	p.S9016Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179182903	179182903	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon100	c.G24297T	p.M8099I	.	.	.
TTN	7273	broad.mit.edu	36	2	179183242	179183242	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon99	c.C24061T	p.R8021C	.	.	.
TTN	7273	broad.mit.edu	36	2	179185285	179185285	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon94	c.G23017A	p.E7673K	.	.	.
TTN	7273	broad.mit.edu	36	2	179206807	179206807	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon59	c.G15469A	p.A5157T	.	.	.
TTN	7273	broad.mit.edu	36	2	179284157	179284157	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon94	c.T24319G	p.F8107V	.	.	.
TTN	7273	broad.mit.edu	36	2	179285867	179285867	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon91	c.G23398T	p.G7800X	.	.	.
TTN	7273	broad.mit.edu	36	2	179287988	179287988	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon87	c.G22438A	p.D7480N	.	.	.
TTN	7273	broad.mit.edu	36	2	179288693	179288693	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon86	c.G21961A	p.E7321K	.	.	.
TTN	7273	broad.mit.edu	36	2	179300687	179300687	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon65	c.C16131A	p.F5377L	.	.	.
TTN	7273	broad.mit.edu	36	2	179313522	179313522	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon45	c.C11594A	p.S3865Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179314163	179314163	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon45	c.G10953T	p.E3651D	.	.	.
TTN	7273	broad.mit.edu	36	2	179319734	179319734	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133379	exon46	c.G15638C	p.G5213A	.	.	.
TTN	7273	broad.mit.edu	36	2	179319910	179319910	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133379	exon46	c.G15462T	p.E5154D	.	.	.
TTN	7273	broad.mit.edu	36	2	179322444	179322444	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133379	exon46	c.C12928A	p.Q4310K	.	.	.
TTN	7273	broad.mit.edu	36	2	179323512	179323512	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133379	exon46	c.G11860T	p.E3954X	.	.	.
TTN	7273	broad.mit.edu	36	2	179324658	179324658	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133379	exon46	c.G10714T	p.D3572Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179344292	179344292	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133379	exon34	c.T8007C	p.S2669S	.	.	.
CCDC141	285025	broad.mit.edu	36	2	179410404	179410404	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173648	exon23	c.G3787A	p.E1263K	.	.	.
CCDC141	285025	broad.mit.edu	36	2	179429340	179429340	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173648	exon18	c.G2754T	p.K918N	.	.	.
CWC22	57703	broad.mit.edu	36	2	180537550	180537550	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020943	exon13	c.C1366T	p.R456C	.	.	.
CWC22	57703	broad.mit.edu	36	2	180546186	180546186	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020943	exon8	c.G783A	p.A261A	.	.	.
CERKL	375298	broad.mit.edu	36	2	182131621	182131621	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201548	exon5	c.G737T	p.R246I	.	.	.
SSFA2	6744	broad.mit.edu	36	2	182469897	182469897	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006751	exon4	c.G325T	p.G109X	.	.	.
FRZB	2487	broad.mit.edu	36	2	183407930	183407930	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001463	exon6	c.A869G	p.D290G	.	.	.
NCKAP1	10787	broad.mit.edu	36	2	183503670	183503670	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013436	exon27	c.C2951T	p.S984L	.	.	.
NUP35	129401	broad.mit.edu	36	2	183731287	183731287	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138285	exon7	c.G641A	p.R214H	.	.	.
FSIP2	401024	broad.mit.edu	36	2	186379453	186379453	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173651	exon17	c.G17442A	p.S5814S	.	.	.
FAM171B	165215	broad.mit.edu	36	2	187324269	187324269	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177454	exon5	c.G888T	p.M296I	.	.	.
COL3A1	1281	broad.mit.edu	36	2	189582092	189582092	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000090	exon48	c.T3723C	p.V1241V	.	.	.
COL5A2	1290	broad.mit.edu	36	2	189609692	189609692	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000393	exon52	c.T4008C	p.C1336C	.	.	.
COL5A2	1290	broad.mit.edu	36	2	189625939	189625939	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000393	exon39	c.G2604T	p.Q868H	.	.	.
COL5A2	1290	broad.mit.edu	36	2	189683376	189683376	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000393	exon2	c.T142C	p.Y48H	.	.	.
WDR75	84128	broad.mit.edu	36	2	190040523	190040523	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032168	exon14	c.C1532T	p.S511F	.	.	.
STAT1	6772	broad.mit.edu	36	2	191562596	191562596	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007315	exon12	c.T1087G	p.L363V	.	.	.
MYO1B	4430	broad.mit.edu	36	2	191958924	191958924	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012223	exon16	c.T1423G	p.F475V	.	.	.
MYO1B	4430	broad.mit.edu	36	2	191969443	191969443	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012223	exon21	c.T2270G	p.I757S	.	.	.
TMEFF2	23671	broad.mit.edu	36	2	192572040	192572040	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016192	exon6	c.C676T	p.R226X	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196389885	196389885	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018897	exon51	c.C9473T	p.S3158L	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196473288	196473288	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018897	exon28	c.C4511T	p.A1504V	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196599866	196599866	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018897	exon7	c.T530C	p.V177A	.	.	.
HECW2	57520	broad.mit.edu	36	2	196891688	196891688	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020760	exon9	c.C2171T	p.S724L	.	.	.
HECW2	57520	broad.mit.edu	36	2	196891879	196891879	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020760	exon9	c.C1980T	p.C660C	.	.	.
GTF3C3	9330	broad.mit.edu	36	2	197346099	197346099	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012086	exon14	c.G1855A	p.V619I	.	.	.
SF3B1	23451	broad.mit.edu	36	2	197973818	197973818	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012433	exon18	c.G2584A	p.E862K	.	.	.
COQ10B	80219	broad.mit.edu	36	2	198032981	198032981	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025147	exon2	c.G185A	p.R62Q	.	.	.
MOBKL3	25843	broad.mit.edu	36	2	198108541	198108541	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199482	exon3	c.A70G	p.K24E	.	.	.
RFTN2	130132	broad.mit.edu	36	2	198204006	198204006	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144629	exon5	c.C902T	p.S301F	.	.	.
AOX1	316	broad.mit.edu	36	2	201229811	201229811	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159	exon27	c.C3077T	p.A1026V	.	.	.
CLK1	1195	broad.mit.edu	36	2	201429938	201429938	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001162407	exon8	c.A974C	p.K325T	.	.	.
ORC2	4999	broad.mit.edu	36	2	201508702	201508702	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006190	exon9	c.G673T	p.E225X	.	.	.
CFLAR	8837	broad.mit.edu	36	2	201733749	201733749	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127183	exon9	c.G1143T	p.K381N	.	.	.
ALS2CR11	151254	broad.mit.edu	36	2	202174734	202174734	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152525	exon4	c.C489T	p.F163F	.	.	.
NOP58	51602	broad.mit.edu	36	2	202838925	202838925	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015934	exon1	c.G16T	p.E6X	.	.	.
ICA1L	130026	broad.mit.edu	36	2	203362035	203362035	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138468	exon12	c.G1006T	p.D336Y	.	.	.
PARD3B	117583	broad.mit.edu	36	2	205874505	205874505	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057177	exon17	c.C2258T	p.S753L	.	.	.
GPR1	2825	broad.mit.edu	36	2	206749275	206749275	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098199	exon3	c.C942A	p.R314R	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206877696	206877696	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020923	exon5	c.G199T	p.D67Y	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206879076	206879076	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020923	exon5	c.G1579T	p.V527F	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206879301	206879301	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020923	exon5	c.G1804T	p.G602X	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206880119	206880119	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020923	exon5	c.G2622A	p.S874S	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206881302	206881302	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020923	exon5	c.G3805A	p.E1269K	.	.	.
KLF7	8609	broad.mit.edu	36	2	207738497	207738497	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003709	exon1	c.A41G	p.Q14R	.	.	.
FAM119A	151194	broad.mit.edu	36	2	208186151	208186151	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127395	exon4	c.G521A	p.R174Q	.	.	.
CPS1	1373	broad.mit.edu	36	2	211189490	211189490	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122634	exon11	c.G1314T	p.K438N	.	.	.
IKZF2	22807	broad.mit.edu	36	2	213581039	213581039	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016260	exon8	c.C871T	p.R291X	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215625470	215625470	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173076	exon5	c.C493A	p.L165I	.	.	.
TNS1	7145	broad.mit.edu	36	2	218421355	218421355	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022648	exon17	c.G1755T	p.Q585H	.	.	.
VIL1	7429	broad.mit.edu	36	2	219005142	219005142	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007127	exon12	c.G1333A	p.V445I	.	.	.
STK36	27148	broad.mit.edu	36	2	219269523	219269523	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015690	exon22	c.A2541G	p.G847G	.	.	.
CYP27A1	1593	broad.mit.edu	36	2	219355368	219355368	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000784	exon1	c.C219T	p.F73F	.	.	.
CYP27A1	1593	broad.mit.edu	36	2	219387400	219387400	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000784	exon7	c.T1238G	p.V413G	.	.	.
CDK5R2	8941	broad.mit.edu	36	2	219533365	219533365	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003936	exon1	c.C579T	p.F193F	.	.	.
CCDC108	255101	broad.mit.edu	36	2	219596272	219596272	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194302	exon16	c.G2721A	p.S907S	.	.	.
ANKZF1	55139	broad.mit.edu	36	2	219809343	219809343	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042410	exon14	c.G2113A	p.D705N	.	.	.
TUBA4A	7277	broad.mit.edu	36	2	219824670	219824670	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006000	exon3	c.G236A	p.R79Q	.	.	.
PTPRN	5798	broad.mit.edu	36	2	219880807	219880807	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199763	exon2	c.C117T	p.G39G	.	.	.
SPEG	10290	broad.mit.edu	36	2	220024125	220024125	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005876	exon5	c.T2137C	p.S713P	.	.	.
SPEG	10290	broad.mit.edu	36	2	220050302	220050302	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005876	exon20	c.C4620T	p.C1540C	.	.	.
OBSL1	23363	broad.mit.edu	36	2	220135520	220135520	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173431	exon8	c.A2801G	p.D934G	.	.	.
OBSL1	23363	broad.mit.edu	36	2	220139890	220139890	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173431	exon5	c.A2040G	p.R680R	.	.	.
FARSB	10056	broad.mit.edu	36	2	223212594	223212594	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005687	exon5	c.G404A	p.R135Q	.	.	.
FARSB	10056	broad.mit.edu	36	2	223221706	223221706	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005687	exon2	c.A111C	p.E37D	.	.	.
ACSL3	2181	broad.mit.edu	36	2	223481895	223481895	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004457	exon4	c.G161A	p.R54Q	.	.	.
MRPL44	65080	broad.mit.edu	36	2	224532717	224532717	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022915	exon2	c.G402T	p.Q134H	.	.	.
DOCK10	55619	broad.mit.edu	36	2	225360288	225360288	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014689	exon49	c.C5489T	p.A1830V	.	.	.
KIAA1486	57624	broad.mit.edu	36	2	226155550	226155550	+	Silent	SNP	G	A	A	rs9917362	byFrequency;byHapMap	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020864	exon4	c.G1173A	p.A391A	.	.	.
COL4A3	1285	broad.mit.edu	36	2	227882183	227882183	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000091	exon50	c.C4660T	p.P1554S	.	.	.
SLC19A3	80704	broad.mit.edu	36	2	228272402	228272402	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025243	exon3	c.C273A	p.I91I	.	.	.
DNER	92737	broad.mit.edu	36	2	229931580	229931580	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139072	exon13	c.G2134T	p.D712Y	.	.	.
DNER	92737	broad.mit.edu	36	2	229961346	229961346	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139072	exon11	c.C1734T	p.C578C	.	.	.
TRIP12	9320	broad.mit.edu	36	2	230369580	230369580	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004238	exon24	c.C3562T	p.R1188X	.	.	.
SLC16A14	151473	broad.mit.edu	36	2	230619399	230619399	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152527	exon4	c.G687T	p.L229L	.	.	.
SP100	6672	broad.mit.edu	36	2	231037092	231037092	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080391	exon11	c.G1124A	p.R375Q	.	.	.
NCL	4691	broad.mit.edu	36	2	232029012	232029012	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005381	exon12	c.C1785T	p.S595S	.	.	.
CHRND	1144	broad.mit.edu	36	2	233107218	233107218	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000751	exon11	c.C1293A	p.L431L	.	.	.
USP40	55230	broad.mit.edu	36	2	234071938	234071938	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018218	exon21	c.G2502T	p.V834V	.	.	.
USP40	55230	broad.mit.edu	36	2	234093017	234093017	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018218	exon16	c.A2157C	p.X719Y	.	.	.
UGT1A9	54600	broad.mit.edu	36	2	234245761	234245761	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021027	exon1	c.G442A	p.D148N	.	.	.
UGT1A3	54659	broad.mit.edu	36	2	234302727	234302727	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019093	exon1	c.G216T	p.E72D	.	.	.
AGAP1	116987	broad.mit.edu	36	2	236371240	236371240	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037131	exon7	c.G772A	p.A258T	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237913924	237913924	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057166	exon35	c.G6553A	p.D2185N	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237948142	237948142	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057166	exon5	c.G1510A	p.A504T	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237968128	237968128	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004369	exon3	c.G550A	p.A184T	.	.	.
ATAD2B	54454	broad.mit.edu	36	2	23838627	23838627	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017552	exon24	c.G3350T	p.R1117I	.	.	.
UBXN2A	165324	broad.mit.edu	36	2	24076093	24076093	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181713	exon7	c.G632T	p.R211I	.	.	.
MTERFD2	130916	broad.mit.edu	36	2	241687566	241687566	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182501	exon2	c.G438T	p.K146N	.	.	.
SEPT2	4735	broad.mit.edu	36	2	241924167	241924167	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008491	exon6	c.G322A	p.A108T	.	.	.
PFN4	375189	broad.mit.edu	36	2	24197630	24197630	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199346	exon3	c.G162T	p.K54N	.	.	.
NCOA1	8648	broad.mit.edu	36	2	24803021	24803021	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003743	exon13	c.G2659A	p.D887N	.	.	.
C2orf39	92749	broad.mit.edu	36	2	26525089	26525089	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145038	exon11	c.G1423A	p.A475T	.	.	.
TMEM214	54867	broad.mit.edu	36	2	27112064	27112064	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017727	exon4	c.C601A	p.L201M	.	.	.
CAD	790	broad.mit.edu	36	2	27309834	27309834	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004341	exon20	c.C3142T	p.R1048C	.	.	.
CAD	790	broad.mit.edu	36	2	27314850	27314850	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004341	exon31	c.C4908T	p.C1636C	.	.	.
GTF3C2	2976	broad.mit.edu	36	2	27405611	27405611	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035521	exon14	c.C1920T	p.F640F	.	.	.
NRBP1	29959	broad.mit.edu	36	2	27513200	27513200	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013392	exon8	c.G738T	p.E246D	.	.	.
CCDC121	79635	broad.mit.edu	36	2	27704057	27704057	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142683	exon2	c.C600A	p.F200L	.	.	.
SLC4A1AP	22950	broad.mit.edu	36	2	27745634	27745634	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018158	exon5	c.T1221G	p.D407E	.	.	.
SLC4A1AP	22950	broad.mit.edu	36	2	27754145	27754145	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018158	exon8	c.C1613T	p.A538V	.	.	.
SLC4A1AP	22950	broad.mit.edu	36	2	27764331	27764331	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018158	exon11	c.G2143T	p.E715X	.	.	.
FAM179A	165186	broad.mit.edu	36	2	29103295	29103295	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199280	exon14	c.G1926T	p.E642D	.	.	.
CLIP4	79745	broad.mit.edu	36	2	29208555	29208555	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024692	exon4	c.G307T	p.D103Y	.	.	.
CLIP4	79745	broad.mit.edu	36	2	29233671	29233671	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024692	exon11	c.G1353T	p.K451N	.	.	.
ALK	238	broad.mit.edu	36	2	29460122	29460122	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004304	exon5	c.C1262T	p.A421V	.	.	.
LCLAT1	253558	broad.mit.edu	36	2	30638584	30638584	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182551	exon5	c.G547A	p.E183K	.	.	.
CAPN13	92291	broad.mit.edu	36	2	30853941	30853941	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144575	exon3	c.C267T	p.G89G	.	.	.
XDH	7498	broad.mit.edu	36	2	31446734	31446734	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000379	exon18	c.G1971A	p.A657A	.	.	.
SPAST	6683	broad.mit.edu	36	2	32215206	32215206	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199436	exon9	c.T1220G	p.F407C	.	.	.
SLC30A6	55676	broad.mit.edu	36	2	32299264	32299264	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193513	exon15	c.G1484T	p.R495I	.	.	.
NLRC4	58484	broad.mit.edu	36	2	32329284	32329284	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021209	exon4	c.G1153T	p.D385Y	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32541881	32541881	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016252	exon24	c.A4869G	p.A1623A	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32696449	32696449	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016252	exon74	c.G14548T	p.E4850X	.	.	.
CRIM1	51232	broad.mit.edu	36	2	36560190	36560190	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016441	exon7	c.C1221T	p.G407G	.	.	.
CDC42EP3	10602	broad.mit.edu	36	2	37726983	37726983	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006449	exon2	c.C252A	p.F84L	.	.	.
SOS1	6654	broad.mit.edu	36	2	39078013	39078013	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005633	exon18	c.G2849T	p.R950I	.	.	.
SLC8A1	6546	broad.mit.edu	36	2	40510704	40510704	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001112800	exon1	c.A221C	p.K74T	.	.	.
EML4	27436	broad.mit.edu	36	2	42337188	42337188	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145076	exon3	c.C252A	p.T84T	.	.	.
EML4	27436	broad.mit.edu	36	2	42381998	42381998	+	De_novo_Start_OutOfFrame	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145076	exon13	c.C1429A	p.L477M	.	.	.
PLEKHH2	130271	broad.mit.edu	36	2	43801359	43801359	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172069	exon16	c.G2508T	p.K836N	.	.	.
PLEKHH2	130271	broad.mit.edu	36	2	43807006	43807006	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172069	exon17	c.G2633A	p.R878Q	.	.	.
DYNC2LI1	51626	broad.mit.edu	36	2	43882287	43882287	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193464	exon10	c.C740A	p.S247X	.	.	.
SRBD1	55133	broad.mit.edu	36	2	45557695	45557695	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018079	exon16	c.G1990T	p.D664Y	.	.	.
ATP6V1E2	90423	broad.mit.edu	36	2	46593106	46593106	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080653	exon2	c.C249T	p.V83V	.	.	.
MSH2	4436	broad.mit.edu	36	2	47489081	47489081	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000251	exon2	c.G249T	p.M83I	.	.	.
MSH6	2956	broad.mit.edu	36	2	47876602	47876602	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000179	exon3	c.G523A	p.A175T	.	.	.
MSH6	2956	broad.mit.edu	36	2	47881391	47881391	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000179	exon4	c.G2765A	p.R922Q	.	.	.
KLRAQ1	129285	broad.mit.edu	36	2	48546159	48546159	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135629	exon9	c.G771A	p.G257G	.	.	.
STON1-GTF2A1L	286749	broad.mit.edu	36	2	48750442	48750442	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006872	exon7	c.C1056T	p.S352S	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50578321	50578321	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135659	exon15	c.C2653A	p.H885N	.	.	.
CCDC88A	55704	broad.mit.edu	36	2	55393102	55393102	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135597	exon23	c.C4048A	p.L1350I	.	.	.
CCDC88A	55704	broad.mit.edu	36	2	55413301	55413301	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135597	exon16	c.G2760T	p.Q920H	.	.	.
REL	5966	broad.mit.edu	36	2	60981677	60981677	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002908	exon4	c.G349T	p.E117X	.	.	.
PUS10	150962	broad.mit.edu	36	2	61089567	61089567	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144709	exon3	c.C214T	p.R72X	.	.	.
USP34	9736	broad.mit.edu	36	2	61269553	61269553	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014709	exon79	c.T10029G	p.T3343T	.	.	.
USP34	9736	broad.mit.edu	36	2	61269687	61269687	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014709	exon79	c.C9895T	p.L3299F	.	.	.
USP34	9736	broad.mit.edu	36	2	61399871	61399871	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014709	exon22	c.C3109T	p.R1037X	.	.	.
USP34	9736	broad.mit.edu	36	2	61420068	61420068	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014709	exon18	c.C2666T	p.S889L	.	.	.
FAM161A	84140	broad.mit.edu	36	2	61920848	61920848	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032180	exon3	c.A795G	p.V265V	.	.	.
EHBP1	23301	broad.mit.edu	36	2	63125737	63125737	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142614	exon22	c.G3418A	p.E1140K	.	.	.
UGP2	7360	broad.mit.edu	36	2	63963253	63963253	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001521	exon4	c.G372A	p.E124E	.	.	.
VPS54	51542	broad.mit.edu	36	2	63974091	63974091	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016516	exon23	c.G2911A	p.E971K	.	.	.
VPS54	51542	broad.mit.edu	36	2	64014500	64014500	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016516	exon12	c.T1550G	p.F517C	.	.	.
AFTPH	54812	broad.mit.edu	36	2	64633618	64633618	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017657	exon2	c.G1506T	p.Q502H	.	.	.
MEIS1	4211	broad.mit.edu	36	2	66649689	66649689	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002398	exon12	c.C1118A	p.P373H	.	.	.
ETAA1	54465	broad.mit.edu	36	2	67479926	67479926	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019002	exon2	c.G345T	p.K115N	.	.	.
PROKR1	10887	broad.mit.edu	36	2	68735611	68735611	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138964	exon2	c.C581T	p.A194V	.	.	.
PROKR1	10887	broad.mit.edu	36	2	68735759	68735759	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138964	exon2	c.C729T	p.G243G	.	.	.
ARHGAP25	9938	broad.mit.edu	36	2	68862907	68862907	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166276	exon2	c.C279T	p.I93I	.	.	.
BMP10	27302	broad.mit.edu	36	2	68946718	68946718	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014482	exon2	c.C824A	p.S275Y	.	.	.
ANTXR1	84168	broad.mit.edu	36	2	69153716	69153716	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053034	exon6	c.C471A	p.L157L	.	.	.
AAK1	22848	broad.mit.edu	36	2	69590076	69590076	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014911	exon14	c.A1797G	p.Q599Q	.	.	.
ANXA4	307	broad.mit.edu	36	2	69899286	69899286	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001153	exon10	c.A680C	p.K227T	.	.	.
ADD2	119	broad.mit.edu	36	2	70787016	70787016	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185054	exon3	c.G33A	p.S11S	.	.	.
ZNF638	27332	broad.mit.edu	36	2	71507638	71507638	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014497	exon24	c.G5131T	p.E1711X	.	.	.
DYSF	8291	broad.mit.edu	36	2	71759747	71759747	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130982	exon53	c.G5916T	p.K1972N	.	.	.
EXOC6B	23233	broad.mit.edu	36	2	72561352	72561352	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015189	exon17	c.G1701T	p.E567D	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73528741	73528741	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015120	exon8	c.G1576T	p.E526X	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73533431	73533431	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015120	exon8	c.C6266A	p.S2089Y	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73570986	73570986	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015120	exon10	c.T8389G	p.L2797V	.	.	.
DQX1	165545	broad.mit.edu	36	2	74603972	74603972	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133637	exon5	c.C1017A	p.V339V	.	.	.
HTRA2	27429	broad.mit.edu	36	2	74613528	74613528	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013247	exon8	c.G1285T	p.E429X	.	.	.
TACR1	6869	broad.mit.edu	36	2	75130276	75130276	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001058	exon5	c.A1015G	p.T339A	.	.	.
TACR1	6869	broad.mit.edu	36	2	75201228	75201228	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015727	exon2	c.G564A	p.P188P	.	.	.
FAM176A	84141	broad.mit.edu	36	2	75598745	75598745	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032181	exon3	c.G30A	p.E10E	.	.	.
MRPL19	9801	broad.mit.edu	36	2	75732779	75732779	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014763	exon3	c.C225A	p.F75L	.	.	.
CTNNA2	1496	broad.mit.edu	36	2	80636376	80636376	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004389	exon12	c.G1591T	p.E531X	.	.	.
CTNNA2	1496	broad.mit.edu	36	2	80684754	80684754	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004389	exon16	c.C2237T	p.A746V	.	.	.
SUCLG1	8802	broad.mit.edu	36	2	84512247	84512247	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003849	exon7	c.G721A	p.E241K	.	.	.
DNAH6	1768	broad.mit.edu	36	2	84664718	84664718	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001370	exon15	c.G2314T	p.D772Y	.	.	.
IMMT	10989	broad.mit.edu	36	2	86225231	86225231	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100169	exon15	c.G1945T	p.E649X	.	.	.
IMMT	10989	broad.mit.edu	36	2	86225395	86225395	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100169	exon15	c.C1781T	p.A594V	.	.	.
REEP1	65055	broad.mit.edu	36	2	86332699	86332699	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022912	exon5	c.C309T	p.I103I	.	.	.
RNF103	7844	broad.mit.edu	36	2	86701050	86701050	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198952	exon2	c.G280A	p.E94K	.	.	.
KIDINS220	57498	broad.mit.edu	36	2	8876281	8876281	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020738	exon3	c.G202T	p.D68Y	.	.	.
MBOAT2	129642	broad.mit.edu	36	2	8934773	8934773	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138799	exon7	c.G528A	p.E176E	.	.	.
ZNF514	84874	broad.mit.edu	36	2	95179349	95179349	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032788	exon5	c.C608A	p.S203Y	.	.	.
IAH1	285148	broad.mit.edu	36	2	9545778	9545778	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039613	exon6	c.G616T	p.E206X	.	.	.
ADAM17	6868	broad.mit.edu	36	2	9552240	9552240	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003183	exon15	c.A1891G	p.T631A	.	.	.
NCAPH	23397	broad.mit.edu	36	2	96383741	96383741	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015341	exon9	c.G1096A	p.D366N	.	.	.
ZAP70	7535	broad.mit.edu	36	2	97708063	97708063	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079	exon4	c.G479A	p.R160Q	.	.	.
CNGA3	1261	broad.mit.edu	36	2	98379623	98379623	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001298	exon8	c.T1558C	p.Y520H	.	.	.
INPP4A	3631	broad.mit.edu	36	2	98570474	98570474	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134225	exon25	c.G2890A	p.E964K	.	.	.
MITD1	129531	broad.mit.edu	36	2	99156835	99156835	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138798	exon2	c.G228T	p.K76N	.	.	.
LYG1	129530	broad.mit.edu	36	2	99278550	99278550	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174898	exon3	c.C16A	p.L6M	.	.	.
EIF5B	9669	broad.mit.edu	36	2	99344139	99344139	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015904	exon4	c.G343T	p.E115X	.	.	.
EIF5B	9669	broad.mit.edu	36	2	99377636	99377636	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015904	exon21	c.G3112A	p.D1038N	.	.	.
AFF3	3899	broad.mit.edu	36	2	99990158	99990158	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025108	exon5	c.C446A	p.S149Y	.	.	.
AFF3	3899	broad.mit.edu	36	2	99991824	99991824	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025108	exon4	c.T131C	p.V44A	.	.	.
FILIP1L	11259	broad.mit.edu	36	3	101051128	101051128	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182909	exon5	c.G2082T	p.E694D	.	.	.
TBC1D23	55773	broad.mit.edu	36	3	101512038	101512038	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199198	exon14	c.T1515G	p.V505V	.	.	.
TOMM70A	9868	broad.mit.edu	36	3	101567194	101567194	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014820	exon12	c.G1731A	p.S577S	.	.	.
LNP1	348801	broad.mit.edu	36	3	101657333	101657333	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085451	exon4	c.G410T	p.R137I	.	.	.
TFG	10342	broad.mit.edu	36	3	101930296	101930296	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006070	exon4	c.C319T	p.R107X	.	.	.
ABI3BP	25890	broad.mit.edu	36	3	101991000	101991000	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015429	exon24	c.C2017T	p.H673Y	.	.	.
IMPG2	50939	broad.mit.edu	36	3	102521244	102521244	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016247	exon2	c.G208T	p.E70X	.	.	.
ZBTB11	27107	broad.mit.edu	36	3	102852701	102852701	+	Nonstop_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014415	exon11	c.G3161T	p.X1054L	.	.	.
SEC13	6396	broad.mit.edu	36	3	10320795	10320795	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136232	exon8	c.T728G	p.L243W	.	.	.
CCDC54	84692	broad.mit.edu	36	3	108579548	108579548	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032600	exon1	c.G424T	p.E142X	.	.	.
DZIP3	9666	broad.mit.edu	36	3	109889551	109889551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014648	exon29	c.C3188T	p.A1063V	.	.	.
PVRL3	25945	broad.mit.edu	36	3	112320229	112320229	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015480	exon3	c.C539T	p.S180F	.	.	.
ZBED2	79413	broad.mit.edu	36	3	112795723	112795723	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024508	exon2	c.G16T	p.D6Y	.	.	.
ATG7	10533	broad.mit.edu	36	3	11325480	11325480	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006395	exon5	c.G356A	p.G119D	.	.	.
CCDC80	151887	broad.mit.edu	36	3	113808764	113808764	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199511	exon7	c.T2455A	p.L819I	.	.	.
KIAA2018	205717	broad.mit.edu	36	3	114860257	114860257	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009899	exon7	c.G2962T	p.D988Y	.	.	.
ATP6V1A	523	broad.mit.edu	36	3	115006933	115006933	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001690	exon14	c.G1632A	p.M544I	.	.	.
KIAA1407	57577	broad.mit.edu	36	3	115238272	115238272	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020817	exon5	c.T467G	p.F156C	.	.	.
ARHGAP31	57514	broad.mit.edu	36	3	120615677	120615677	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020754	exon12	c.G2211T	p.E737D	.	.	.
ARHGAP31	57514	broad.mit.edu	36	3	120616868	120616868	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020754	exon12	c.C3402T	p.V1134V	.	.	.
PLA1A	51365	broad.mit.edu	36	3	120811083	120811083	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015900	exon4	c.C532T	p.L178F	.	.	.
GPR156	165829	broad.mit.edu	36	3	121368752	121368752	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168271	exon9	c.C2250A	p.F750L	.	.	.
LRRC58	116064	broad.mit.edu	36	3	121536591	121536591	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099678	exon3	c.G715T	p.E239X	.	.	.
POLQ	10721	broad.mit.edu	36	3	122691889	122691889	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199420	exon16	c.G2579A	p.R860Q	.	.	.
HCLS1	3059	broad.mit.edu	36	3	122848866	122848866	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005335	exon4	c.G278A	p.R93Q	.	.	.
GOLGB1	2804	broad.mit.edu	36	3	122866468	122866468	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004487	exon21	c.C9640T	p.R3214X	.	.	.
GOLGB1	2804	broad.mit.edu	36	3	122895909	122895909	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004487	exon13	c.G6136T	p.E2046X	.	.	.
GOLGB1	2804	broad.mit.edu	36	3	122897700	122897700	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004487	exon13	c.G4345T	p.E1449X	.	.	.
GOLGB1	2804	broad.mit.edu	36	3	122897880	122897880	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004487	exon13	c.G4165T	p.E1389X	.	.	.
CASR	846	broad.mit.edu	36	3	123458797	123458797	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000388	exon3	c.C365A	p.S122Y	.	.	.
CASR	846	broad.mit.edu	36	3	123463804	123463804	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000388	exon4	c.A1232G	p.Y411C	.	.	.
CASR	846	broad.mit.edu	36	3	123485317	123485317	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000388	exon7	c.C1826T	p.T609M	.	.	.
DTX3L	151636	broad.mit.edu	36	3	123771158	123771158	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138287	exon3	c.G1532A	p.G511E	.	.	.
SEMA5B	54437	broad.mit.edu	36	3	124129490	124129490	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031702	exon8	c.C687T	p.C229C	.	.	.
CCDC14	64770	broad.mit.edu	36	3	125116604	125116604	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022757	exon12	c.G2451T	p.K817N	.	.	.
CCDC14	64770	broad.mit.edu	36	3	125148480	125148480	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022757	exon7	c.G1082T	p.R361I	.	.	.
KALRN	8997	broad.mit.edu	36	3	125470408	125470408	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003947	exon5	c.C579A	p.F193L	.	.	.
KALRN	8997	broad.mit.edu	36	3	125600241	125600241	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003947	exon13	c.G2173A	p.A725T	.	.	.
RAF1	5894	broad.mit.edu	36	3	12601681	12601681	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002880	exon15	c.C1608T	p.I536I	.	.	.
CCDC37	348807	broad.mit.edu	36	3	127634704	127634704	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182628	exon14	c.C1389A	p.V463V	.	.	.
CHCHD6	84303	broad.mit.edu	36	3	127934639	127934639	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032343	exon4	c.G295A	p.D99N	.	.	.
RPL32	6161	broad.mit.edu	36	3	12856657	12856657	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001007073	exon2	c.G80A	p.R27Q	.	.	.
RAB7A	7879	broad.mit.edu	36	3	130008058	130008058	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004637	exon4	c.C334T	p.P112S	.	.	.
MBD4	8930	broad.mit.edu	36	3	130633083	130633083	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003925	exon8	c.A1694C	p.K565T	.	.	.
PLXND1	23129	broad.mit.edu	36	3	130773042	130773042	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015103	exon17	c.G3336A	p.T1112T	.	.	.
TMCC1	23023	broad.mit.edu	36	3	130856537	130856537	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017395	exon5	c.C1611T	p.I537I	.	.	.
COL6A5	256076	broad.mit.edu	36	3	131642331	131642331	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153264	exon35	c.C6459A	p.F2153L	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131850719	131850719	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102608	exon32	c.G5356A	p.D1786N	.	.	.
ATP2C1	27032	broad.mit.edu	36	3	132202834	132202834	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199183	exon27	c.A2662C	p.K888Q	.	.	.
MRPL3	11222	broad.mit.edu	36	3	132669670	132669670	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007208	exon9	c.C849A	p.I283I	.	.	.
ACPP	55	broad.mit.edu	36	3	133533736	133533736	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099	exon4	c.G314A	p.R105Q	.	.	.
TF	7018	broad.mit.edu	36	3	134967837	134967837	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001063	exon12	c.G1356A	p.K452K	.	.	.
RYK	6259	broad.mit.edu	36	3	135377510	135377510	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002958	exon12	c.G1367A	p.G456D	.	.	.
RYK	6259	broad.mit.edu	36	3	135390399	135390399	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002958	exon9	c.A1072C	p.K358Q	.	.	.
MSL2	55167	broad.mit.edu	36	3	137354102	137354102	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018133	exon2	c.A311C	p.K104T	.	.	.
STAG1	10274	broad.mit.edu	36	3	137559271	137559271	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005862	exon28	c.C3046T	p.R1016X	.	.	.
DZIP1L	199221	broad.mit.edu	36	3	139264402	139264402	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173543	exon16	c.G2250T	p.E750D	.	.	.
ESYT3	83850	broad.mit.edu	36	3	139675135	139675135	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031913	exon19	c.C2305T	p.R769C	.	.	.
CEP70	80321	broad.mit.edu	36	3	139771908	139771908	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024491	exon6	c.G407T	p.R136M	.	.	.
MRPS22	56945	broad.mit.edu	36	3	140557311	140557311	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020191	exon7	c.A976C	p.N326H	.	.	.
COPB2	9276	broad.mit.edu	36	3	140584954	140584954	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004766	exon2	c.A17G	p.D6G	.	.	.
NMNAT3	349565	broad.mit.edu	36	3	140780434	140780434	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178177	exon3	c.C152T	p.A51V	.	.	.
TMEM43	79188	broad.mit.edu	36	3	14151287	14151287	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024334	exon8	c.C600T	p.V200V	.	.	.
GRK7	131890	broad.mit.edu	36	3	142982051	142982051	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139209	exon2	c.C758A	p.S253Y	 GRK7,skin,NS,Substitution - Missense,0 	.	.
ATR	545	broad.mit.edu	36	3	143709554	143709554	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184	exon28	c.G4940A	p.R1647H	.	.	.
ATR	545	broad.mit.edu	36	3	143751138	143751138	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184	exon15	c.G3044A	p.R1015Q	.	.	.
SLC9A9	285195	broad.mit.edu	36	3	144998412	144998412	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173653	exon3	c.C402A	p.F134L	.	.	.
PLSCR4	57088	broad.mit.edu	36	3	147395725	147395725	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020353	exon8	c.G821T	p.S274I	.	.	.
PLSCR2	57047	broad.mit.edu	36	3	147649793	147649793	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020359	exon7	c.T535C	p.S179P	.	.	.
PLSCR1	5359	broad.mit.edu	36	3	147722434	147722434	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021105	exon6	c.G452A	p.R151Q	.	.	.
C3orf20	84077	broad.mit.edu	36	3	14776487	14776487	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184958	exon14	c.C1964A	p.S655Y	.	.	.
ZIC4	84107	broad.mit.edu	36	3	148596340	148596340	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168378	exon3	c.G827A	p.R276Q	.	.	.
ZIC1	7545	broad.mit.edu	36	3	148613054	148613054	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003412	exon2	c.G1042A	p.D348N	.	.	.
FGD5	152273	broad.mit.edu	36	3	14942686	14942686	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152536	exon18	c.C4174A	p.L1392I	.	.	.
NR2C2	7182	broad.mit.edu	36	3	15030255	15030255	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003298	exon4	c.A285G	p.Q95Q	.	.	.
HPS3	84343	broad.mit.edu	36	3	150355586	150355586	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032383	exon8	c.C1403T	p.S468L	.	.	.
CP	1356	broad.mit.edu	36	3	150410740	150410740	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000096	exon3	c.G511A	p.D171N	.	.	.
NR2C2	7182	broad.mit.edu	36	3	15046898	15046898	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003298	exon10	c.G1102A	p.D368N	.	.	.
TM4SF4	7104	broad.mit.edu	36	3	150688110	150688110	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004617	exon3	c.G279A	p.T93T	.	.	.
TSC22D2	9819	broad.mit.edu	36	3	151658866	151658866	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014779	exon4	c.G2096T	p.S699I	.	.	.
EIF2A	83939	broad.mit.edu	36	3	151772845	151772845	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032025	exon10	c.T1222C	p.L408L	.	.	.
FAM194A	131831	broad.mit.edu	36	3	151869849	151869849	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152394	exon12	c.C1423T	p.P475S	.	.	.
MED12L	116931	broad.mit.edu	36	3	152391286	152391286	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053002	exon13	c.G1846A	p.A616T	.	.	.
MED12L	116931	broad.mit.edu	36	3	152393993	152393993	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053002	exon14	c.C1995A	p.S665S	.	.	.
GPR171	29909	broad.mit.edu	36	3	152398986	152398986	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013308	exon3	c.G878A	p.R293H	.	.	.
GPR87	53836	broad.mit.edu	36	3	152494795	152494795	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023915	exon3	c.A929C	p.D310A	.	.	.
P2RY13	53829	broad.mit.edu	36	3	152529010	152529010	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176894	exon2	c.C524T	p.S175F	.	.	.
P2RY12	64805	broad.mit.edu	36	3	152538821	152538821	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022788	exon3	c.G503A	p.R168K	.	.	.
MED12L	116931	broad.mit.edu	36	3	152578612	152578612	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053002	exon29	c.C4334A	p.S1445Y	.	.	.
MED12L	116931	broad.mit.edu	36	3	152613750	152613750	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053002	exon40	c.C6169T	p.R2057X	.	.	.
IGSF10	285313	broad.mit.edu	36	3	152647547	152647547	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178822	exon4	c.C2912T	p.S971F	.	.	.
ARHGEF26	26084	broad.mit.edu	36	3	155440873	155440873	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015595	exon12	c.T2115G	p.D705E	.	.	.
MME	4311	broad.mit.edu	36	3	156317393	156317393	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000902	exon7	c.C578A	p.S193Y	.	.	.
C3orf33	285315	broad.mit.edu	36	3	156964014	156964014	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173657	exon6	c.C742T	p.R248C	.	.	.
GMPS	8833	broad.mit.edu	36	3	157111667	157111667	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003875	exon7	c.A791G	p.Q264R	.	.	.
TIPARP	25976	broad.mit.edu	36	3	157878577	157878577	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015508	exon2	c.C397T	p.R133X	.	.	.
GALNTL2	117248	broad.mit.edu	36	3	16212330	16212330	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_054110	exon2	c.A599G	p.H200R	.	.	.
B3GALNT1	8706	broad.mit.edu	36	3	162286803	162286803	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033168	exon4	c.G434A	p.R145Q	.	.	.
NMD3	51068	broad.mit.edu	36	3	162427741	162427741	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015938	exon4	c.A192G	p.P64P	.	.	.
SI	6476	broad.mit.edu	36	3	166207415	166207415	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001041	exon37	c.G4289A	p.G1430E	.	.	.
SI	6476	broad.mit.edu	36	3	166265759	166265759	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001041	exon7	c.A791G	p.D264G	.	.	.
BCHE	590	broad.mit.edu	36	3	167031439	167031439	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000055	exon2	c.C77A	p.S26X	.	.	.
PLCL2	23228	broad.mit.edu	36	3	17027674	17027674	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144382	exon3	c.G1813A	p.D605N	.	.	.
MECOM	2122	broad.mit.edu	36	3	170295672	170295672	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105077	exon13	c.C2536T	p.R846C	.	.	.
PRKCI	5584	broad.mit.edu	36	3	171463882	171463882	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002740	exon4	c.G335A	p.R112H	.	.	.
SLC7A14	57709	broad.mit.edu	36	3	171699219	171699219	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020949	exon4	c.C690T	p.I230I	.	.	.
EIF5A2	56648	broad.mit.edu	36	3	172094813	172094813	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020390	exon4	c.G364T	p.E122X	.	.	.
PLD1	5337	broad.mit.edu	36	3	172862647	172862647	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130081	exon19	c.G2123A	p.R708H	.	.	.
PLD1	5337	broad.mit.edu	36	3	172878090	172878090	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130081	exon16	c.C1842T	p.F614F	.	.	.
PLD1	5337	broad.mit.edu	36	3	172914409	172914409	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130081	exon9	c.G879A	p.T293T	.	.	.
TBL1XR1	79718	broad.mit.edu	36	3	178234753	178234753	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024665	exon13	c.G1177T	p.E393X	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180399570	180399570	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006218	exon2	c.G263A	p.R88Q	 PIK3CA,central_nervous_system,brain,Substitution - Missense,0 	.	.
PIK3CA	5290	broad.mit.edu	36	3	180434768	180434768	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006218	exon21	c.G3129T	p.M1043I	 PIK3CA,ovary,NS,Substitution - Missense,0 	.	.
TTC14	151613	broad.mit.edu	36	3	181808143	181808143	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133462	exon10	c.G1186T	p.E396X	.	.	.
CCDC39	339829	broad.mit.edu	36	3	181815491	181815491	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181426	exon20	c.C2738T	p.A913V	.	.	.
CCDC39	339829	broad.mit.edu	36	3	181817421	181817421	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181426	exon17	c.G2293T	p.E765X	.	.	.
CCDC39	339829	broad.mit.edu	36	3	181861123	181861123	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181426	exon4	c.G445A	p.E149K	.	.	.
FXR1	8087	broad.mit.edu	36	3	182149718	182149718	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013438	exon7	c.G523T	p.E175X	.	.	.
DCUN1D1	54165	broad.mit.edu	36	3	184166218	184166218	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020640	exon2	c.G21A	p.S7S	.	.	.
MCF2L2	23101	broad.mit.edu	36	3	184430170	184430170	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015078	exon17	c.G2023T	p.E675X	.	.	.
MCF2L2	23101	broad.mit.edu	36	3	184431453	184431453	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015078	exon16	c.G1909T	p.E637X	.	.	.
B3GNT5	84002	broad.mit.edu	36	3	184470845	184470845	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032047	exon2	c.C565A	p.L189I	.	.	.
MCF2L2	23101	broad.mit.edu	36	3	184511408	184511408	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015078	exon9	c.G982A	p.D328N	.	.	.
ABCC5	10057	broad.mit.edu	36	3	185160224	185160224	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005688	exon17	c.C2473T	p.P825S	.	.	.
ECE2	9718	broad.mit.edu	36	3	185485482	185485482	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014693	exon9	c.C1397T	p.S466F	.	.	.
PSMD2	5708	broad.mit.edu	36	3	185504516	185504516	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002808	exon11	c.C1411A	p.L471I	.	.	.
EPHB3	2049	broad.mit.edu	36	3	185778209	185778209	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004443	exon7	c.G1549A	p.A517T	.	.	.
VPS8	23355	broad.mit.edu	36	3	186035137	186035137	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009921	exon5	c.G360T	p.K120N	.	.	.
VPS8	23355	broad.mit.edu	36	3	186054598	186054598	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009921	exon12	c.A978G	p.I326M	.	.	.
VPS8	23355	broad.mit.edu	36	3	186165000	186165000	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009921	exon37	c.G3234T	p.K1078N	.	.	.
MAP3K13	9175	broad.mit.edu	36	3	186677863	186677863	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004721	exon12	c.T2486G	p.F829C	.	.	.
IGF2BP2	10644	broad.mit.edu	36	3	186847540	186847540	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006548	exon15	c.C1674T	p.I558I	.	.	.
TRA2B	6434	broad.mit.edu	36	3	187126063	187126063	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004593	exon3	c.G216A	p.R72R	.	.	.
ETV5	2119	broad.mit.edu	36	3	187257674	187257674	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004454	exon11	c.C1093T	p.R365X	.	.	.
TBCCD1	55171	broad.mit.edu	36	3	187751729	187751729	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134415	exon7	c.G1578T	p.E526D	.	.	.
HRG	3273	broad.mit.edu	36	3	187877668	187877668	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000412	exon7	c.G880A	p.E294K	.	.	.
HRG	3273	broad.mit.edu	36	3	187877851	187877851	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000412	exon7	c.C1063A	p.H355N	.	.	.
HRG	3273	broad.mit.edu	36	3	187878184	187878184	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000412	exon7	c.A1396C	p.K466Q	.	.	.
KNG1	3827	broad.mit.edu	36	3	187942275	187942275	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102416	exon10	c.G1396A	p.E466K	.	.	.
ADIPOQ	9370	broad.mit.edu	36	3	188054667	188054667	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004797	exon3	c.G215A	p.G72D	.	.	.
ST6GAL1	6480	broad.mit.edu	36	3	188274667	188274667	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173216	exon7	c.C831A	p.F277L	.	.	.
BCL6	604	broad.mit.edu	36	3	188930314	188930314	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130845	exon5	c.G573A	p.P191P	.	.	.
LEPREL1	55214	broad.mit.edu	36	3	191194700	191194700	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134418	exon3	c.G157A	p.E53K	.	.	.
ATP13A5	344905	broad.mit.edu	36	3	194512333	194512333	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198505	exon20	c.T2411C	p.V804A	.	.	.
ATP13A5	344905	broad.mit.edu	36	3	194514581	194514581	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198505	exon19	c.G2254T	p.E752X	.	.	.
CPN2	1370	broad.mit.edu	36	3	195544962	195544962	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080513	exon2	c.C165A	p.I55I	.	.	.
LRRC15	131578	broad.mit.edu	36	3	195561764	195561764	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130830	exon2	c.G1304A	p.R435H	.	.	.
LRRC33	375387	broad.mit.edu	36	3	197872299	197872299	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198565	exon3	c.C1388A	p.S463Y	.	.	.
IQCG	84223	broad.mit.edu	36	3	199143520	199143520	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032263	exon6	c.C566T	p.S189L	.	.	.
EFHB	151651	broad.mit.edu	36	3	19950030	19950030	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144715	exon1	c.C485A	p.A162D	.	.	.
KAT2B	8850	broad.mit.edu	36	3	20131436	20131436	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003884	exon7	c.G1102A	p.D368N	.	.	.
KAT2B	8850	broad.mit.edu	36	3	20156828	20156828	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003884	exon13	c.G1972A	p.E658K	.	.	.
KAT2B	8850	broad.mit.edu	36	3	20162852	20162852	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003884	exon14	c.G2045A	p.R682Q	.	.	.
NR1D2	9975	broad.mit.edu	36	3	23984326	23984326	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005126	exon7	c.G1351A	p.A451T	.	.	.
OXSM	54995	broad.mit.edu	36	3	25808267	25808267	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017897	exon2	c.C752T	p.A251V	.	.	.
CNTN4	152330	broad.mit.edu	36	3	2883482	2883482	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175607	exon7	c.T501G	p.D167E	.	.	.
CRBN	51185	broad.mit.edu	36	3	3172946	3172946	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173482	exon6	c.A704C	p.N235T	.	.	.
GLB1	2720	broad.mit.edu	36	3	33074695	33074695	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000404	exon6	c.G623A	p.R208H	.	.	.
PDCD6IP	10015	broad.mit.edu	36	3	33854768	33854768	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001162429	exon9	c.G1141A	p.D381N	.	.	.
CHL1	10752	broad.mit.edu	36	3	361349	361349	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006614	exon9	c.C805A	p.L269I	.	.	.
STAC	6769	broad.mit.edu	36	3	36522297	36522297	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003149	exon8	c.T887G	p.F296C	.	.	.
LRRFIP2	9209	broad.mit.edu	36	3	37125136	37125136	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006309	exon13	c.G653A	p.R218Q	.	.	.
GOLGA4	2803	broad.mit.edu	36	3	37342989	37342989	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172713	exon15	c.G4674T	p.Q1558H	.	.	.
ITGA9	3680	broad.mit.edu	36	3	37767017	37767017	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002207	exon23	c.C2494T	p.R832X	.	.	.
SLC22A13	9390	broad.mit.edu	36	3	38290789	38290789	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004256	exon2	c.A401C	p.K134T	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38572996	38572996	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099405	exon24	c.C4323A	p.F1441L	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38576785	38576785	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099405	exon23	c.G4102A	p.E1368K	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38591875	38591875	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099405	exon20	c.C3583T	p.R1195C	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38597447	38597447	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099405	exon17	c.G3207A	p.T1069T	.	.	.
SCN10A	6336	broad.mit.edu	36	3	38714128	38714128	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006514	exon27	c.C5587T	p.R1863W	.	.	.
SCN10A	6336	broad.mit.edu	36	3	38714979	38714979	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006514	exon27	c.G4736A	p.R1579Q	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38867014	38867014	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014139	exon25	c.A4289C	p.N1430T	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38888065	38888065	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014139	exon21	c.G3634T	p.D1212Y	.	.	.
TTC21A	199223	broad.mit.edu	36	3	39134656	39134656	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145755	exon7	c.C809A	p.S270Y	.	.	.
CSRNP1	64651	broad.mit.edu	36	3	39159952	39159952	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033027	exon5	c.G1368T	p.E456D	.	.	.
CX3CR1	1524	broad.mit.edu	36	3	39282555	39282555	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171174	exon2	c.C546T	p.S182S	.	.	.
ENTPD3	956	broad.mit.edu	36	3	40439609	40439609	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001248	exon8	c.C1096T	p.P366S	.	.	.
CHL1	10752	broad.mit.edu	36	3	415023	415023	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006614	exon25	c.G3208A	p.D1070N	.	.	.
CHL1	10752	broad.mit.edu	36	3	418314	418314	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006614	exon27	c.G3391A	p.E1131K	.	.	.
SETMAR	6419	broad.mit.edu	36	3	4333834	4333834	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006515	exon3	c.C1959T	p.V653V	.	.	.
C3orf23	285343	broad.mit.edu	36	3	44412975	44412975	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173826	exon7	c.A775G	p.T259A	.	.	.
ZNF197	10168	broad.mit.edu	36	3	44659355	44659355	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006991	exon6	c.C1729T	p.R577X	.	.	.
ZNF501	115560	broad.mit.edu	36	3	44751194	44751194	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145044	exon3	c.C277T	p.L93F	.	.	.
TGM4	7047	broad.mit.edu	36	3	44910105	44910105	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003241	exon5	c.C463T	p.R155C	.	.	.
FYCO1	79443	broad.mit.edu	36	3	45938316	45938316	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024513	exon18	c.T4382G	p.F1461C	.	.	.
LTF	4057	broad.mit.edu	36	3	46476212	46476212	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199149	exon2	c.C13T	p.R5C	.	.	.
ALS2CL	259173	broad.mit.edu	36	3	46698050	46698050	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190707	exon12	c.C1218T	p.F406F	.	.	.
KIF9	64147	broad.mit.edu	36	3	47252623	47252623	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182902	exon19	c.G2122T	p.E708X	.	.	.
QARS	5859	broad.mit.edu	36	3	49108511	49108511	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005051	exon24	c.C2283A	p.V761V	.	.	.
DAG1	1605	broad.mit.edu	36	3	49523250	49523250	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004393	exon2	c.C279A	p.I93I	.	.	.
RNF123	63891	broad.mit.edu	36	3	49712664	49712664	+	Missense_Mutation	SNP	C	T	T	rs34379671	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022064	exon13	c.C985T	p.R329C	.	.	.
IP6K1	9807	broad.mit.edu	36	3	49750727	49750727	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153273	exon3	c.G356A	p.R119H	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51226619	51226619	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004947	exon14	c.C1112T	p.S371L	.	.	.
ALAS1	211	broad.mit.edu	36	3	52212995	52212995	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000688	exon5	c.G504T	p.K168N	.	.	.
DNAH1	25981	broad.mit.edu	36	3	52382064	52382064	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015512	exon44	c.C6940T	p.R2314C	.	.	.
DNAH1	25981	broad.mit.edu	36	3	52392443	52392443	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015512	exon51	c.T7943C	p.I2648T	.	.	.
NISCH	11188	broad.mit.edu	36	3	52496723	52496723	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007184	exon16	c.C2175T	p.F725F	.	.	.
STAB1	23166	broad.mit.edu	36	3	52510285	52510285	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015136	exon2	c.G142A	p.A48T	.	.	.
PBRM1	55193	broad.mit.edu	36	3	52618474	52618474	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018313	exon17	c.C2462A	p.T821K	.	.	.
PBRM1	55193	broad.mit.edu	36	3	52667326	52667326	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018313	exon6	c.G574A	p.A192T	.	.	.
ITIH3	3699	broad.mit.edu	36	3	52814871	52814871	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002217	exon16	c.G1881T	p.P627P	.	.	.
TKT	7086	broad.mit.edu	36	3	53249318	53249318	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135055	exon4	c.C426T	p.F142F	.	.	.
DCP1A	55802	broad.mit.edu	36	3	53351289	53351289	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018403	exon3	c.C226T	p.H76Y	.	.	.
CACNA2D3	55799	broad.mit.edu	36	3	54889864	54889864	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018398	exon21	c.T1846G	p.L616V	.	.	.
ERC2	26059	broad.mit.edu	36	3	56443481	56443481	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015576	exon2	c.G595T	p.E199X	.	.	.
ARHGEF3	50650	broad.mit.edu	36	3	56738490	56738490	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128615	exon13	c.C1525A	p.L509I	.	.	.
ARHGEF3	50650	broad.mit.edu	36	3	56746261	56746261	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128615	exon11	c.C1129T	p.R377W	.	.	.
FAM116A	201627	broad.mit.edu	36	3	57591227	57591227	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152678	exon18	c.A1581C	p.Q527H	.	.	.
ABHD6	57406	broad.mit.edu	36	3	58231727	58231727	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020676	exon5	c.A419C	p.K140T	.	.	.
RPP14	11102	broad.mit.edu	36	3	58278219	58278219	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098783	exon6	c.C331A	p.L111I	.	.	.
PTPRG	5793	broad.mit.edu	36	3	62228463	62228463	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002841	exon19	c.T2803G	p.F935V	.	.	.
PSMD6	9861	broad.mit.edu	36	3	63979545	63979545	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014814	exon4	c.C706T	p.L236F	.	.	.
PRICKLE2	166336	broad.mit.edu	36	3	64117976	64117976	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198859	exon5	c.C502T	p.L168F	.	.	.
ADAMTS9	56999	broad.mit.edu	36	3	64557559	64557559	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182920	exon27	c.G4166A	p.G1389D	.	.	.
SUCLG2	8801	broad.mit.edu	36	3	67662230	67662230	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177599	exon3	c.T297G	p.G99G	.	.	.
TMF1	7110	broad.mit.edu	36	3	69155976	69155976	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007114	exon16	c.G3058A	p.E1020K	.	.	.
ARL6IP5	10550	broad.mit.edu	36	3	69217050	69217050	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006407	exon1	c.G162A	p.M54I	.	.	.
CNTN3	5067	broad.mit.edu	36	3	74493763	74493763	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020872	exon10	c.G1332T	p.K444N	.	.	.
CNTN3	5067	broad.mit.edu	36	3	74497424	74497424	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020872	exon8	c.G1066T	p.A356S	.	.	.
GBE1	2632	broad.mit.edu	36	3	81802776	81802776	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000158	exon3	c.C332T	p.S111L	.	.	.
LMCD1	29995	broad.mit.edu	36	3	8582210	8582210	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014583	exon5	c.C816A	p.C272X	.	.	.
VGLL3	389136	broad.mit.edu	36	3	87100651	87100651	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016206	exon3	c.G716A	p.R239H	.	.	.
PROS1	5627	broad.mit.edu	36	3	95080797	95080797	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000313	exon13	c.G1544A	p.R515H	.	.	.
OGG1	4968	broad.mit.edu	36	3	9768494	9768494	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016828	exon3	c.C426A	p.F142L	.	.	.
PRRT3	285368	broad.mit.edu	36	3	9966667	9966667	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207351	exon2	c.G133T	p.A45S	.	.	.
ADH7	131	broad.mit.edu	36	4	100568010	100568010	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000673	exon5	c.C543A	p.V181V	.	.	.
MTTP	4547	broad.mit.edu	36	4	100731421	100731421	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000253	exon6	c.A508G	p.I170V	.	.	.
MTTP	4547	broad.mit.edu	36	4	100762962	100762962	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000253	exon19	c.G2619T	p.E873D	.	.	.
EMCN	51705	broad.mit.edu	36	4	101563574	101563574	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159694	exon5	c.A387G	p.L129L	.	.	.
BANK1	55024	broad.mit.edu	36	4	102970106	102970106	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017935	exon2	c.G189T	p.E63D	.	.	.
BANK1	55024	broad.mit.edu	36	4	103058233	103058233	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017935	exon7	c.A1070G	p.N357S	.	.	.
CENPE	1062	broad.mit.edu	36	4	104251490	104251490	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001813	exon47	c.T7668G	p.I2556M	.	.	.
CENPE	1062	broad.mit.edu	36	4	104299861	104299861	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001813	exon22	c.C2356A	p.H786N	.	.	.
CENPE	1062	broad.mit.edu	36	4	104317569	104317569	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001813	exon14	c.A1326G	p.I442M	.	.	.
TET2	54790	broad.mit.edu	36	4	106377414	106377414	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017628	exon3	c.C2866A	p.L956I	.	.	.
CFI	3426	broad.mit.edu	36	4	110881698	110881698	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000204	exon13	c.A1552C	p.I518L	.	.	.
LRIT3	345193	broad.mit.edu	36	4	111010703	111010703	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198506	exon3	c.G1214T	p.R405I	.	.	.
ENPEP	2028	broad.mit.edu	36	4	111690448	111690448	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001977	exon17	c.C2458A	p.L820M	.	.	.
AP1AR	55435	broad.mit.edu	36	4	113408907	113408907	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018569	exon10	c.G802A	p.E268K	.	.	.
ALPK1	80216	broad.mit.edu	36	4	113573022	113573022	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025144	exon11	c.C2870A	p.S957Y	.	.	.
C4orf21	55345	broad.mit.edu	36	4	113758402	113758402	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018392	exon6	c.G2245T	p.E749X	.	.	.
ANK2	287	broad.mit.edu	36	4	114499208	114499208	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001148	exon38	c.T9985G	p.F3329V	.	.	.
ARSJ	79642	broad.mit.edu	36	4	115044156	115044156	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024590	exon2	c.G523A	p.G175R	.	.	.
UGT8	7368	broad.mit.edu	36	4	115806306	115806306	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128174	exon4	c.G987T	p.K329N	.	.	.
NDST3	9348	broad.mit.edu	36	4	119194648	119194648	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004784	exon2	c.G135T	p.E45D	.	.	.
NDST3	9348	broad.mit.edu	36	4	119284258	119284258	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004784	exon6	c.G1510T	p.E504X	.	.	.
USP53	54532	broad.mit.edu	36	4	120431779	120431779	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019050	exon17	c.G2263T	p.E755X	.	.	.
FABP2	2169	broad.mit.edu	36	4	120461383	120461383	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000134	exon2	c.G130T	p.E44X	.	.	.
IL2	3558	broad.mit.edu	36	4	123594422	123594422	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000586	exon3	c.G244A	p.E82K	.	.	.
SPATA5	166378	broad.mit.edu	36	4	124078811	124078811	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145207	exon8	c.G1415T	p.R472I	.	.	.
ANKRD50	57182	broad.mit.edu	36	4	125811673	125811673	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167882	exon3	c.C1672T	p.R558X	.	.	.
ANKRD50	57182	broad.mit.edu	36	4	125812912	125812912	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167882	exon3	c.C433T	p.R145C	.	.	.
FAT4	79633	broad.mit.edu	36	4	126458624	126458624	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon1	c.C1608A	p.S536S	.	.	.
FAT4	79633	broad.mit.edu	36	4	126461616	126461616	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon1	c.G4600A	p.A1534T	.	.	.
FAT4	79633	broad.mit.edu	36	4	126461940	126461940	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon1	c.G4924A	p.E1642K	.	.	.
FAT4	79633	broad.mit.edu	36	4	126555570	126555570	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon5	c.A6002G	p.K2001R	.	.	.
FAT4	79633	broad.mit.edu	36	4	126591646	126591646	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon9	c.G10025A	p.R3342Q	.	.	.
FAT4	79633	broad.mit.edu	36	4	126592790	126592790	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon9	c.G11169A	p.K3723K	.	.	.
SLC25A31	83447	broad.mit.edu	36	4	128914152	128914152	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031291	exon6	c.C921T	p.F307F	.	.	.
ELF2	1998	broad.mit.edu	36	4	140200085	140200085	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006874	exon7	c.G1104A	p.A368A	.	.	.
NAA15	80155	broad.mit.edu	36	4	140525515	140525515	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057175	exon18	c.G2235A	p.T745T	.	.	.
MAML3	55534	broad.mit.edu	36	4	140860359	140860359	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018717	exon6	c.G2973A	p.P991P	.	.	.
RNF150	57484	broad.mit.edu	36	4	142108339	142108339	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020724	exon2	c.C623T	p.S208L	.	.	.
INPP4B	8821	broad.mit.edu	36	4	143222727	143222727	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003866	exon26	c.C2549T	p.S850L	.	.	.
ZNF718	255403	broad.mit.edu	36	4	145801	145801	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039127	exon4	c.G1326T	p.K442N	.	.	.
ZNF827	152485	broad.mit.edu	36	4	146920061	146920061	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178835	exon9	c.C2436A	p.F812L	.	.	.
SLC10A7	84068	broad.mit.edu	36	4	147434691	147434691	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029998	exon8	c.C562T	p.R188X	.	.	.
EDNRA	1909	broad.mit.edu	36	4	148660501	148660501	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001957	exon3	c.C469A	p.L157I	.	.	.
TMEM184C	55751	broad.mit.edu	36	4	148773560	148773560	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018241	exon8	c.C836T	p.T279M	.	.	.
NR3C2	4306	broad.mit.edu	36	4	149293114	149293114	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166104	exon5	c.G2115A	p.T705T	.	.	.
LRBA	987	broad.mit.edu	36	4	151993524	151993524	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006726	exon23	c.G2788T	p.E930X	.	.	.
KIAA0922	23240	broad.mit.edu	36	4	154743963	154743963	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015196	exon24	c.G2695A	p.E899K	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155375502	155375502	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017639	exon25	c.T8387G	p.F2796C	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155376623	155376623	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017639	exon25	c.G7266T	p.E2422D	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155376864	155376864	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017639	exon25	c.A7025G	p.D2342G	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155381150	155381150	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017639	exon23	c.G5983T	p.D1995Y	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155438679	155438679	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017639	exon18	c.G4872T	p.E1624D	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155439147	155439147	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017639	exon18	c.T4404G	p.V1468V	.	.	.
FGA	2243	broad.mit.edu	36	4	155727266	155727266	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021871	exon5	c.G765A	p.P255P	.	.	.
FGG	2266	broad.mit.edu	36	4	155750714	155750714	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021870	exon5	c.G487A	p.E163K	.	.	.
RBM46	166863	broad.mit.edu	36	4	155938617	155938617	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144979	exon3	c.G356T	p.R119I	.	.	.
MAP9	79884	broad.mit.edu	36	4	156513790	156513790	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039580	exon4	c.A429C	p.K143N	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156837665	156837665	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130682	exon3	c.C196T	p.R66W	.	.	.
GUCY1B3	2983	broad.mit.edu	36	4	156937097	156937097	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000857	exon8	c.T962C	p.F321S	.	.	.
GRIA2	2891	broad.mit.edu	36	4	158453367	158453367	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083620	exon4	c.G415T	p.D139Y	.	.	.
GRIA2	2891	broad.mit.edu	36	4	158503523	158503523	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083620	exon15	c.G2388A	p.A796A	.	.	.
FAM198B	51313	broad.mit.edu	36	4	159296315	159296315	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128424	exon3	c.G1023T	p.Q341H	.	.	.
RAPGEF2	9693	broad.mit.edu	36	4	160490771	160490771	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014247	exon20	c.C3262A	p.L1088I	.	.	.
FSTL5	56884	broad.mit.edu	36	4	162526397	162526397	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020116	exon16	c.C2496A	p.I832I	.	.	.
ANP32C	23520	broad.mit.edu	36	4	165338187	165338187	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012403	exon1	c.G127T	p.E43X	.	.	.
TRIM60	166655	broad.mit.edu	36	4	166181672	166181672	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152620	exon3	c.T998G	p.F333C	.	.	.
DDX60	55601	broad.mit.edu	36	4	169433192	169433192	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017631	exon16	c.A2183C	p.K728T	.	.	.
NEK1	4750	broad.mit.edu	36	4	170558271	170558271	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199400	exon31	c.C3474A	p.F1158L	.	.	.
CLCN3	1182	broad.mit.edu	36	4	170855125	170855125	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001829	exon9	c.G1228A	p.A410T	.	.	.
CLCN3	1182	broad.mit.edu	36	4	170877778	170877778	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173872	exon14	c.G2588T	p.S863I	.	.	.
LAP3	51056	broad.mit.edu	36	4	17218163	17218163	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015907	exon13	c.C1413T	p.F471F	.	.	.
GALNTL6	442117	broad.mit.edu	36	4	173469468	173469468	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001034845	exon4	c.C376T	p.R126C	.	.	.
GLRA3	8001	broad.mit.edu	36	4	175834918	175834918	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042543	exon7	c.C813A	p.S271S	.	.	.
ADAM29	11086	broad.mit.edu	36	4	176133786	176133786	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130705	exon3	c.G535T	p.E179X	.	.	.
WDR17	116966	broad.mit.edu	36	4	177283447	177283447	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181265	exon5	c.C737A	p.S246Y	.	.	.
SPATA4	132851	broad.mit.edu	36	4	177350905	177350905	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144644	exon4	c.G555A	p.S185S	.	.	.
ASB5	140458	broad.mit.edu	36	4	177379339	177379339	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080874	exon5	c.T631C	p.S211P	.	.	.
ASB5	140458	broad.mit.edu	36	4	177379727	177379727	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080874	exon4	c.G403T	p.D135Y	.	.	.
ASB5	140458	broad.mit.edu	36	4	177383472	177383472	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080874	exon2	c.C211T	p.R71X	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183786926	183786926	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080477	exon4	c.G878T	p.R293I	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183838832	183838832	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080477	exon9	c.C1782A	p.I594I	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183840082	183840082	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080477	exon10	c.C1956A	p.C652X	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183912538	183912538	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080477	exon21	c.C4024A	p.L1342M	.	.	.
C4orf41	60684	broad.mit.edu	36	4	184837514	184837514	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199053	exon9	c.T846C	p.C282C	.	.	.
C4orf41	60684	broad.mit.edu	36	4	184843491	184843491	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199053	exon17	c.G1703A	p.R568Q	.	.	.
STOX2	56977	broad.mit.edu	36	4	185167799	185167799	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020225	exon3	c.C814A	p.R272R	.	.	.
CASP3	836	broad.mit.edu	36	4	185790516	185790516	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032991	exon4	c.C207T	p.V69V	.	.	.
ACSL1	2180	broad.mit.edu	36	4	185942132	185942132	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001995	exon4	c.C318T	p.G106G	.	.	.
SLC25A4	291	broad.mit.edu	36	4	186305071	186305071	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001151	exon4	c.C849T	p.G283G	.	.	.
LRP2BP	55805	broad.mit.edu	36	4	186532347	186532347	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018409	exon5	c.G515T	p.S172I	.	.	.
LRP2BP	55805	broad.mit.edu	36	4	186532579	186532579	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018409	exon4	c.C361T	p.L121F	.	.	.
CCDC110	256309	broad.mit.edu	36	4	186616814	186616814	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152775	exon6	c.A1921C	p.K641Q	.	.	.
TLR3	7098	broad.mit.edu	36	4	187240850	187240850	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003265	exon4	c.C1016A	p.S339Y	.	.	.
FAT1	2195	broad.mit.edu	36	4	187771314	187771314	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005245	exon13	c.G9406T	p.E3136X	.	.	.
TRIML1	339976	broad.mit.edu	36	4	189297938	189297938	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178556	exon1	c.G232A	p.A78T	.	.	.
KCNIP4	80333	broad.mit.edu	36	4	20914545	20914545	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147183	exon1	c.T83A	p.I28N	.	.	.
POLN	353497	broad.mit.edu	36	4	2184627	2184627	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181808	exon2	c.G158T	p.S53I	.	.	.
SEPSECS	51091	broad.mit.edu	36	4	24755802	24755802	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016955	exon7	c.T856G	p.F286V	.	.	.
ZCCHC4	29063	broad.mit.edu	36	4	24926052	24926052	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024936	exon3	c.A261C	p.R87S	.	.	.
STIM2	57620	broad.mit.edu	36	4	26613038	26613038	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001169117	exon6	c.G727T	p.E243X	.	.	.
HTT	3064	broad.mit.edu	36	4	3191799	3191799	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002111	exon53	c.C7335A	p.V2445V	.	.	.
ARAP2	116984	broad.mit.edu	36	4	35888614	35888614	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015230	exon6	c.G1280T	p.R427I	.	.	.
TBC1D1	23216	broad.mit.edu	36	4	37696447	37696447	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015173	exon4	c.C960A	p.S320S	.	.	.
TBC1D1	23216	broad.mit.edu	36	4	37705873	37705873	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015173	exon7	c.C1280T	p.A427V	.	.	.
FAM114A1	92689	broad.mit.edu	36	4	38556428	38556428	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138389	exon3	c.G334A	p.E112K	.	.	.
WDR19	57728	broad.mit.edu	36	4	38922562	38922562	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025132	exon23	c.G2640T	p.K880N	.	.	.
RFC1	5981	broad.mit.edu	36	4	39029384	39029384	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002913	exon2	c.G111T	p.K37N	.	.	.
PDS5A	23244	broad.mit.edu	36	4	39603872	39603872	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100399	exon5	c.G506T	p.R169I	.	.	.
RHOH	399	broad.mit.edu	36	4	39921931	39921931	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004310	exon3	c.G530A	p.R177Q	.	.	.
TMEM33	55161	broad.mit.edu	36	4	41632279	41632279	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018126	exon1	c.C21T	p.N7N	.	.	.
ZNF721	170960	broad.mit.edu	36	4	426032	426032	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133474	exon3	c.G2224A	p.E742K	.	.	.
ZNF721	170960	broad.mit.edu	36	4	426276	426276	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133474	exon3	c.G1980A	p.T660T	.	.	.
GABRA2	2555	broad.mit.edu	36	4	46009295	46009295	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000807	exon5	c.G451T	p.D151Y	.	.	.
GABRA4	2557	broad.mit.edu	36	4	46625285	46625285	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000809	exon9	c.G1379A	p.R460Q	.	.	.
NFXL1	152518	broad.mit.edu	36	4	47551843	47551843	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152995	exon20	c.G2411T	p.R804I	.	.	.
ZAR1	326340	broad.mit.edu	36	4	48189734	48189734	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175619	exon3	c.G1079T	p.R360I	.	.	.
FRYL	285527	broad.mit.edu	36	4	48278226	48278226	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015030	exon21	c.C2140T	p.R714W	.	.	.
FRYL	285527	broad.mit.edu	36	4	48292471	48292471	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015030	exon15	c.C1141T	p.R381C	.	.	.
OCIAD1	54940	broad.mit.edu	36	4	48529401	48529401	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079840	exon2	c.G3T	p.M1I	.	.	.
LRRC66	339977	broad.mit.edu	36	4	52556746	52556746	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024611	exon4	c.A1199G	p.Y400C	.	.	.
SCFD2	152579	broad.mit.edu	36	4	53481723	53481723	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152540	exon6	c.C1633T	p.R545W	.	.	.
KDR	3791	broad.mit.edu	36	4	55655780	55655780	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002253	exon21	c.G2917T	p.A973S	.	.	.
CLOCK	9575	broad.mit.edu	36	4	55999212	55999212	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004898	exon22	c.T2355G	p.F785L	.	.	.
CLOCK	9575	broad.mit.edu	36	4	56039751	56039751	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004898	exon6	c.C244T	p.R82X	.	.	.
EXOC1	55763	broad.mit.edu	36	4	56460612	56460612	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024924	exon17	c.G2142T	p.E714D	.	.	.
CEP135	9662	broad.mit.edu	36	4	56578758	56578758	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025009	exon22	c.C2990T	p.S997L	.	.	.
AASDH	132949	broad.mit.edu	36	4	56910433	56910433	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181806	exon11	c.G2241A	p.A747A	.	.	.
AASDH	132949	broad.mit.edu	36	4	56939072	56939072	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181806	exon4	c.C667T	p.R223W	.	.	.
SRP72	6731	broad.mit.edu	36	4	57062660	57062660	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006947	exon19	c.C1892T	p.A631V	.	.	.
EVC2	132884	broad.mit.edu	36	4	5746982	5746982	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166136	exon3	c.C191A	p.S64Y	.	.	.
JAKMIP1	152789	broad.mit.edu	36	4	6131608	6131608	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144720	exon8	c.C1261T	p.R421C	.	.	.
LPHN3	23284	broad.mit.edu	36	4	62441205	62441205	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015236	exon7	c.G1513T	p.E505X	.	.	.
LPHN3	23284	broad.mit.edu	36	4	62592800	62592800	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015236	exon22	c.G3548A	p.R1183Q	.	.	.
EPHA5	2044	broad.mit.edu	36	4	65914263	65914263	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004439	exon11	c.G2032T	p.E678X	.	.	.
EPHA5	2044	broad.mit.edu	36	4	65968853	65968853	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004439	exon6	c.A1428C	p.K476N	.	.	.
TMPRSS11B	132724	broad.mit.edu	36	4	68790075	68790075	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182502	exon2	c.G51A	p.T17T	.	.	.
UGT2B17	7367	broad.mit.edu	36	4	69116443	69116443	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077	exon1	c.G355A	p.E119K	.	.	.
UGT2A3	79799	broad.mit.edu	36	4	69830206	69830206	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024743	exon6	c.G1498A	p.A500T	.	.	.
UGT2A3	79799	broad.mit.edu	36	4	69845632	69845632	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024743	exon2	c.C845A	p.P282H	.	.	.
UGT2A3	79799	broad.mit.edu	36	4	69852003	69852003	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024743	exon1	c.T65G	p.F22C	.	.	.
UGT2A1	10941	broad.mit.edu	36	4	70489929	70489929	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006798	exon6	c.G1334T	p.R445I	.	.	.
SULT1E1	6783	broad.mit.edu	36	4	70755650	70755650	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005420	exon3	c.C229T	p.R77X	.	.	.
ODAM	54959	broad.mit.edu	36	4	71097037	71097037	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017855	exon2	c.G91T	p.E31X	.	.	.
RUFY3	22902	broad.mit.edu	36	4	71873513	71873513	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014961	exon11	c.G1198T	p.D400Y	.	.	.
RUFY3	22902	broad.mit.edu	36	4	71878382	71878382	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037442	exon13	c.C1354T	p.R452X	.	.	.
DCK	1633	broad.mit.edu	36	4	72111255	72111255	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000788	exon6	c.C675T	p.F225F	.	.	.
SLC4A4	8671	broad.mit.edu	36	4	72535881	72535881	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134742	exon11	c.C1321T	p.R441W	.	.	.
GC	2638	broad.mit.edu	36	4	72842647	72842647	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000583	exon7	c.C807A	p.A269A	.	.	.
ADAMTS3	9508	broad.mit.edu	36	4	73398337	73398337	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014243	exon12	c.T1666C	p.S556P	.	.	.
ADAMTS3	9508	broad.mit.edu	36	4	73499423	73499423	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014243	exon4	c.G634T	p.D212Y	.	.	.
ANKRD17	26057	broad.mit.edu	36	4	74219739	74219739	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198889	exon15	c.G2440A	p.A814T	.	.	.
AFP	174	broad.mit.edu	36	4	74522765	74522765	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134	exon3	c.T148G	p.F50V	.	.	.
AFP	174	broad.mit.edu	36	4	74533945	74533945	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134	exon9	c.C1088T	p.P363L	.	.	.
C4orf26	152816	broad.mit.edu	36	4	76708404	76708404	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178497	exon2	c.G124A	p.D42N	.	.	.
ZNF595	152687	broad.mit.edu	36	4	76725	76725	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182524	exon4	c.G1330T	p.E444X	.	.	.
SORCS2	57537	broad.mit.edu	36	4	7716985	7716985	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020777	exon7	c.C958T	p.R320W	.	.	.
ART3	419	broad.mit.edu	36	4	77222241	77222241	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001179	exon3	c.G310A	p.E104K	.	.	.
CCDC158	339965	broad.mit.edu	36	4	77524826	77524826	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042784	exon4	c.A305C	p.E102A	.	.	.
SEPT11	55752	broad.mit.edu	36	4	78136694	78136694	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018243	exon2	c.C120A	p.F40L	.	.	.
GK2	2712	broad.mit.edu	36	4	80547121	80547121	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033214	exon1	c.C1258T	p.R420C	.	.	.
PRDM8	56978	broad.mit.edu	36	4	81341615	81341615	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099403	exon3	c.G367T	p.D123Y	.	.	.
FGF5	2250	broad.mit.edu	36	4	81407232	81407232	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033143	exon1	c.G230T	p.S77I	.	.	.
SH3TC1	54436	broad.mit.edu	36	4	8290194	8290194	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018986	exon17	c.A3650C	p.K1217T	.	.	.
HNRNPD	3184	broad.mit.edu	36	4	83498929	83498929	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031370	exon4	c.A528C	p.K176N	.	.	.
ACOX3	8310	broad.mit.edu	36	4	8447260	8447260	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003501	exon10	c.G1166A	p.R389H	.	.	.
AFF1	4299	broad.mit.edu	36	4	88187757	88187757	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166693	exon4	c.C1046A	p.S349Y	.	.	.
DSPP	1834	broad.mit.edu	36	4	88756350	88756350	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014208	exon5	c.G3512A	p.S1171N	.	.	.
ABCG2	9429	broad.mit.edu	36	4	89280151	89280151	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004827	exon2	c.A21C	p.E7D	.	.	.
FAM190A	401145	broad.mit.edu	36	4	91448857	91448857	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145065	exon2	c.G399T	p.E133D	.	.	.
GRID2	2895	broad.mit.edu	36	4	94766556	94766556	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001510	exon14	c.A2307G	p.G769G	.	.	.
GRID2	2895	broad.mit.edu	36	4	94909460	94909460	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001510	exon15	c.C2437A	p.L813M	.	.	.
SMARCAD1	56916	broad.mit.edu	36	4	95418686	95418686	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128429	exon17	c.G2173T	p.E725X	.	.	.
PDHA2	5161	broad.mit.edu	36	4	96980580	96980580	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005390	exon1	c.C256T	p.R86C	.	.	.
PDHA2	5161	broad.mit.edu	36	4	96981450	96981450	+	Missense_Mutation	SNP	C	T	T	rs17024795	byCluster;byFrequency;byHapMap	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005390	exon1	c.C1126T	p.R376C	.	.	.
C5orf38	153571	broad.mit.edu	36	5	2805755	2805756	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178569	exon2	c.220_221insG	p.W74fs	.	.	.
SLCO4C1	353189	broad.mit.edu	36	5	101625544	101625544	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_180991	exon5	c.C992T	p.P331L	.	.	.
MARCH6	10299	broad.mit.edu	36	5	10455530	10455530	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005885	exon13	c.G1088A	p.R363H	.	.	.
WDR36	134430	broad.mit.edu	36	5	110467429	110467429	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139281	exon7	c.G811T	p.V271F	.	.	.
WDR36	134430	broad.mit.edu	36	5	110489208	110489208	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139281	exon22	c.A2522G	p.D841G	.	.	.
CTNND2	1501	broad.mit.edu	36	5	11076080	11076080	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001332	exon17	c.A2800G	p.M934V	.	.	.
EPB41L4A	64097	broad.mit.edu	36	5	111604400	111604400	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022140	exon10	c.G802A	p.E268K	.	.	.
APC	324	broad.mit.edu	36	5	112202530	112202530	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.C3286T	p.R1096X	 APC,large_intestine,colon,Substitution - Nonsense,0 	.	.
APC	324	broad.mit.edu	36	5	112203115	112203115	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.G3871T	p.E1291X	 APC,upper_aerodigestive_tract,sinonasal_and_nasal_cavity,Substitution - Missense,0 	.	.
APC	324	broad.mit.edu	36	5	112205276	112205276	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.C6032A	p.S2011Y	.	.	.
SRP19	6728	broad.mit.edu	36	5	112231058	112231058	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003135	exon5	c.A360C	p.Q120H	.	.	.
MCC	4163	broad.mit.edu	36	5	112467829	112467829	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085377	exon7	c.C1150A	p.Q384K	.	.	.
YTHDC2	64848	broad.mit.edu	36	5	112917218	112917218	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022828	exon14	c.G1900A	p.E634K	.	.	.
CTNND2	1501	broad.mit.edu	36	5	11399720	11399720	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001332	exon9	c.C1392T	p.V464V	.	.	.
TRIM36	55521	broad.mit.edu	36	5	114527128	114527128	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018700	exon2	c.G284A	p.R95Q	.	.	.
CCDC112	153733	broad.mit.edu	36	5	114634965	114634965	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040440	exon7	c.G1176A	p.Q392Q	.	.	.
DMXL1	1657	broad.mit.edu	36	5	118530299	118530299	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005509	exon22	c.C5060A	p.S1687Y	.	.	.
HSD17B4	3295	broad.mit.edu	36	5	118893503	118893503	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000414	exon21	c.G1783T	p.D595Y	.	.	.
FAM170A	340069	broad.mit.edu	36	5	118997635	118997635	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182761	exon3	c.G293A	p.R98H	.	.	.
FBN2	2201	broad.mit.edu	36	5	127682513	127682513	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001999	exon35	c.C4551T	p.C1517C	.	.	.
FBN2	2201	broad.mit.edu	36	5	127894276	127894276	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001999	exon3	c.G347T	p.R116I	.	.	.
CHSY3	337876	broad.mit.edu	36	5	129548591	129548591	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175856	exon3	c.G1857T	p.K619N	.	.	.
CHSY3	337876	broad.mit.edu	36	5	129548829	129548829	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175856	exon3	c.C2095T	p.L699F	.	.	.
TERT	7015	broad.mit.edu	36	5	1307511	1307511	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198253	exon15	c.C3267T	p.Y1089Y	.	.	.
RAD50	10111	broad.mit.edu	36	5	131943086	131943086	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005732	exon4	c.G544A	p.A182T	.	.	.
GDF9	2661	broad.mit.edu	36	5	132225369	132225369	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005260	exon2	c.T1176C	p.H392H	.	.	.
VDAC1	7416	broad.mit.edu	36	5	133339505	133339505	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003374	exon7	c.G658A	p.G220R	.	.	.
UBE2B	7320	broad.mit.edu	36	5	133744329	133744329	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003337	exon4	c.G172T	p.E58X	.	.	.
SLC25A48	153328	broad.mit.edu	36	5	135216225	135216225	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145282	exon4	c.C237A	p.V79V	.	.	.
FBXL21	26223	broad.mit.edu	36	5	135300409	135300409	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012159	exon5	c.T227G	p.F76C	.	.	.
KLHL3	26249	broad.mit.edu	36	5	136997654	136997654	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017415	exon12	c.C1421T	p.A474V	.	.	.
MYOT	9499	broad.mit.edu	36	5	137246994	137246994	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006790	exon7	c.A839T	p.D280V	.	.	.
KDM3B	51780	broad.mit.edu	36	5	137755624	137755624	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016604	exon8	c.C2404T	p.R802X	.	.	.
KDM3B	51780	broad.mit.edu	36	5	137781148	137781148	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016604	exon13	c.C3385T	p.R1129X	.	.	.
EGR1	1958	broad.mit.edu	36	5	137831663	137831663	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001964	exon2	c.T1626C	p.I542I	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13805340	13805340	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon64	c.G10931A	p.G3644E	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13823874	13823874	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon56	c.C9589T	p.R3197W	.	.	.
MATR3	9782	broad.mit.edu	36	5	138671789	138671789	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001194955	exon2	c.G786T	p.E262D	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13876440	13876440	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon40	c.G6619T	p.D2207Y	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13898101	13898101	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon32	c.T5116C	p.Y1706H	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13972297	13972297	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon7	c.G963A	p.S321S	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13984251	13984251	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon2	c.G160A	p.E54K	.	.	.
ANKHD1-EIF4EBP3	404734	broad.mit.edu	36	5	139888450	139888450	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017747	exon29	c.G5735A	p.R1912H	.	.	.
PCDHA3	56145	broad.mit.edu	36	5	140161675	140161675	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031497	exon1	c.G709A	p.D237N	.	.	.
PCDHA3	56145	broad.mit.edu	36	5	140162098	140162098	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031497	exon1	c.G1132A	p.D378N	.	.	.
PCDHA7	56141	broad.mit.edu	36	5	140196277	140196277	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018910	exon1	c.A2125G	p.S709G	.	.	.
PCDHAC1	56135	broad.mit.edu	36	5	140288161	140288161	+	Silent	SNP	G	A	A	rs17844366	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031882	exon1	c.G1500A	p.V500V	.	.	.
PCDHAC2	56134	broad.mit.edu	36	5	140326984	140326984	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018899	exon1	c.G449A	p.R150Q	.	.	.
PCDHB1	29930	broad.mit.edu	36	5	140411662	140411662	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013340	exon1	c.G423T	p.K141N	.	.	.
PCDHB2	56133	broad.mit.edu	36	5	140456626	140456626	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018936	exon1	c.G2068A	p.V690I	.	.	.
PCDHB4	56131	broad.mit.edu	36	5	140482446	140482446	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018938	exon1	c.C682T	p.R228X	.	.	.
PCDHB8	56128	broad.mit.edu	36	5	140538502	140538502	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019120	exon1	c.G703A	p.D235N	.	.	.
PCDHB8	56128	broad.mit.edu	36	5	140538675	140538675	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019120	exon1	c.T876G	p.T292T	.	.	.
PCDHB10	56126	broad.mit.edu	36	5	140553953	140553953	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018930	exon1	c.C1644T	p.R548R	.	.	.
PCDHB14	56122	broad.mit.edu	36	5	140585323	140585323	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018934	exon1	c.G2062A	p.V688I	.	.	.
PCDHGA1	56114	broad.mit.edu	36	5	140692688	140692688	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031993	exon1	c.G2253T	p.Q751H	.	.	.
PCDHGA3	56112	broad.mit.edu	36	5	140705021	140705021	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018916	exon1	c.G1237A	p.E413K	.	.	.
PCDHGA5	56110	broad.mit.edu	36	5	140725820	140725820	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032054	exon1	c.G1739A	p.R580H	.	.	.
PCDHGB5	56101	broad.mit.edu	36	5	140759031	140759031	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032099	exon1	c.G1153A	p.E385K	.	.	.
PCDHGB7	56099	broad.mit.edu	36	5	140779115	140779115	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032101	exon1	c.C1505T	p.S502L	.	.	.
PCDHGB7	56099	broad.mit.edu	36	5	140779603	140779603	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032101	exon1	c.G1993A	p.A665T	.	.	.
PCDHGC4	56098	broad.mit.edu	36	5	140845990	140845990	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032406	exon1	c.C1066T	p.L356F	.	.	.
DIAPH1	1729	broad.mit.edu	36	5	140937244	140937244	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005219	exon12	c.G1262A	p.R421Q	.	.	.
TCERG1	10915	broad.mit.edu	36	5	145839798	145839798	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040006	exon11	c.G1771T	p.E591X	.	.	.
TCERG1	10915	broad.mit.edu	36	5	145863641	145863641	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040006	exon17	c.G2546A	p.R849Q	.	.	.
PPP2R2B	5521	broad.mit.edu	36	5	146415455	146415455	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181676	exon1	c.G45A	p.P15P	.	.	.
DPYSL3	1809	broad.mit.edu	36	5	146753836	146753836	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001387	exon14	c.C1668T	p.I556I	.	.	.
ANKH	56172	broad.mit.edu	36	5	14766764	14766764	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_054027	exon10	c.C1154T	p.A385V	.	.	.
CSF1R	1436	broad.mit.edu	36	5	149417062	149417062	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005211	exon17	c.C2300T	p.A767V	.	.	.
SLC6A7	6534	broad.mit.edu	36	5	149569361	149569361	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014228	exon14	c.C1901T	p.S634L	.	.	.
NDST1	3340	broad.mit.edu	36	5	149911528	149911528	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001543	exon14	c.T2447G	p.F816C	.	.	.
FAT2	2196	broad.mit.edu	36	5	150894366	150894366	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001447	exon12	c.G9224A	p.R3075Q	.	.	.
FAT2	2196	broad.mit.edu	36	5	150904745	150904745	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001447	exon9	c.C6136T	p.R2046W	.	.	.
SPARC	6678	broad.mit.edu	36	5	151026188	151026188	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003118	exon8	c.G661A	p.E221K	.	.	.
G3BP1	10146	broad.mit.edu	36	5	151159686	151159686	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005754	exon9	c.G887T	p.R296I	.	.	.
LPCAT1	79888	broad.mit.edu	36	5	1516862	1516862	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024830	exon14	c.G1509T	p.E503D	.	.	.
GRIA1	2890	broad.mit.edu	36	5	153006889	153006889	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114183	exon3	c.G429T	p.Q143H	.	.	.
MFAP3	4238	broad.mit.edu	36	5	153412910	153412910	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005927	exon3	c.G533A	p.R178H	.	.	.
C5orf4	10826	broad.mit.edu	36	5	154190579	154190579	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032385	exon5	c.G341A	p.R114Q	.	.	.
EBF1	1879	broad.mit.edu	36	5	158433018	158433018	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024007	exon6	c.G518A	p.R173Q	.	.	.
ADRA1B	147	broad.mit.edu	36	5	159276650	159276650	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000679	exon1	c.G160A	p.A54T	.	.	.
FBXL7	23194	broad.mit.edu	36	5	15981508	15981508	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012304	exon3	c.G637A	p.E213K	.	.	.
GABRG2	2566	broad.mit.edu	36	5	161457406	161457406	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198904	exon4	c.G512T	p.R171I	.	.	.
GABRG2	2566	broad.mit.edu	36	5	161508778	161508778	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198904	exon8	c.C1009A	p.L337I	.	.	.
GABRG2	2566	broad.mit.edu	36	5	161511320	161511320	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198904	exon9	c.C1135T	p.R379W	.	.	.
HMMR	3161	broad.mit.edu	36	5	162827292	162827292	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012484	exon4	c.C230A	p.S77Y	.	.	.
FAM134B	54463	broad.mit.edu	36	5	16530807	16530807	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001034850	exon8	c.T964C	p.S322P	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167486429	167486429	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122679	exon12	c.C2302T	p.R768C	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167606759	167606759	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122679	exon27	c.C6210A	p.F2070L	.	.	.
MYO10	4651	broad.mit.edu	36	5	16832680	16832680	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012334	exon9	c.G904T	p.D302Y	.	.	.
CCDC99	54908	broad.mit.edu	36	5	168958639	168958639	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017785	exon10	c.C1222T	p.R408X	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169043903	169043903	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004946	exon8	c.C732A	p.L244L	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169059685	169059685	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004946	exon13	c.G1222A	p.A408T	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169061987	169061987	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004946	exon14	c.C1361T	p.A454V	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169106994	169106994	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004946	exon23	c.G2284T	p.E762X	.	.	.
KCNIP1	30820	broad.mit.edu	36	5	170078450	170078450	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001034838	exon2	c.C199T	p.R67X	.	.	.
KCNIP1	30820	broad.mit.edu	36	5	170093463	170093463	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001034838	exon7	c.C613A	p.L205I	.	.	.
FBXW11	23291	broad.mit.edu	36	5	171259574	171259574	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033645	exon3	c.G407A	p.R136Q	.	.	.
STK10	6793	broad.mit.edu	36	5	171516247	171516247	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005990	exon2	c.G307A	p.D103N	.	.	.
HMP19	51617	broad.mit.edu	36	5	173423899	173423899	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015980	exon3	c.G188A	p.R63Q	.	.	.
DRD1	1812	broad.mit.edu	36	5	174802257	174802257	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000794	exon2	c.C452A	p.S151Y	.	.	.
HIGD2A	192286	broad.mit.edu	36	5	175749045	175749045	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138820	exon2	c.T262C	p.F88L	.	.	.
HK3	3101	broad.mit.edu	36	5	176250336	176250336	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002115	exon6	c.G536A	p.S179N	.	.	.
RMND5B	64777	broad.mit.edu	36	5	177503288	177503288	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022762	exon6	c.C481T	p.R161X	.	.	.
ZNF354B	117608	broad.mit.edu	36	5	178243192	178243192	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058230	exon5	c.G1133A	p.G378E	.	.	.
ZNF454	285676	broad.mit.edu	36	5	178306085	178306085	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182594	exon3	c.C153A	p.V51V	.	.	.
ZNF454	285676	broad.mit.edu	36	5	178325306	178325306	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182594	exon5	c.G1295T	p.R432I	.	.	.
GRM6	2916	broad.mit.edu	36	5	178346143	178346143	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000843	exon8	c.C1718A	p.P573H	.	.	.
GRM6	2916	broad.mit.edu	36	5	178351113	178351113	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000843	exon3	c.G775T	p.E259X	.	.	.
ZNF354C	30832	broad.mit.edu	36	5	178438379	178438379	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014594	exon5	c.T340C	p.S114P	.	.	.
ADAMTS2	9509	broad.mit.edu	36	5	178540689	178540689	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021599	exon5	c.G965A	p.S322N	.	.	.
RNF130	55819	broad.mit.edu	36	5	179400216	179400216	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018434	exon2	c.C285A	p.F95L	.	.	.
FLT4	2324	broad.mit.edu	36	5	179968647	179968647	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182925	exon29	c.G3820T	p.D1274Y	.	.	.
TRIM52	84851	broad.mit.edu	36	5	180619642	180619642	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032765	exon1	c.T779C	p.V260A	.	.	.
TRIM52	84851	broad.mit.edu	36	5	180619892	180619892	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032765	exon1	c.C529A	p.L177I	.	.	.
CDH18	1016	broad.mit.edu	36	5	19782938	19782938	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004934	exon4	c.T393C	p.I131I	.	.	.
CDH12	1010	broad.mit.edu	36	5	21838077	21838077	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004061	exon10	c.C1212T	p.G404G	.	.	.
CDH12	1010	broad.mit.edu	36	5	21852906	21852906	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004061	exon9	c.G907T	p.E303X	.	.	.
CDH10	1008	broad.mit.edu	36	5	24523647	24523647	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006727	exon12	c.C2249A	p.S750X	.	.	.
CDH10	1008	broad.mit.edu	36	5	24541077	24541077	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006727	exon8	c.T1294G	p.F432V	.	.	.
CDH10	1008	broad.mit.edu	36	5	24545450	24545450	+	Missense_Mutation	SNP	G	T	T	rs1395027	byHapMap	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006727	exon7	c.C1238A	p.S413Y	.	.	.
CDH10	1008	broad.mit.edu	36	5	24571625	24571625	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006727	exon4	c.G590A	p.R197K	.	.	.
CDH10	1008	broad.mit.edu	36	5	24573525	24573525	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006727	exon3	c.G247T	p.D83Y	.	.	.
CDH9	1007	broad.mit.edu	36	5	26921893	26921893	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016279	exon10	c.C1569A	p.F523L	.	.	.
CDH9	1007	broad.mit.edu	36	5	27024044	27024044	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016279	exon2	c.A154G	p.K52E	.	.	.
CDH6	1004	broad.mit.edu	36	5	31333159	31333159	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004932	exon4	c.T530G	p.F177C	.	.	.
DROSHA	29102	broad.mit.edu	36	5	31508061	31508061	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013235	exon16	c.C2107A	p.L703I	.	.	.
DROSHA	29102	broad.mit.edu	36	5	31540470	31540470	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013235	exon10	c.C1617T	p.S539S	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32124365	32124365	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178140	exon19	c.C5054A	p.S1685X	.	.	.
ZFR	51663	broad.mit.edu	36	5	32439095	32439095	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016107	exon8	c.G1389A	p.T463T	.	.	.
SUB1	10923	broad.mit.edu	36	5	32627473	32627473	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006713	exon3	c.A120T	p.Q40H	.	.	.
RXFP3	51289	broad.mit.edu	36	5	33973073	33973073	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016568	exon1	c.C471T	p.I157I	.	.	.
RAI14	26064	broad.mit.edu	36	5	34860119	34860119	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145522	exon14	c.G2328A	p.S776S	.	.	.
AGXT2	64902	broad.mit.edu	36	5	35075362	35075362	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031900	exon3	c.C186A	p.G62G	.	.	.
SPEF2	79925	broad.mit.edu	36	5	35741603	35741603	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024867	exon18	c.G2601T	p.K867N	.	.	.
SPEF2	79925	broad.mit.edu	36	5	35829064	35829064	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024867	exon32	c.A4601G	p.D1534G	.	.	.
UGT3A2	167127	broad.mit.edu	36	5	36084912	36084912	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168316	exon3	c.G577T	p.E193X	.	.	.
UGT3A2	167127	broad.mit.edu	36	5	36084985	36084985	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168316	exon3	c.G504T	p.K168N	.	.	.
IRX1	79192	broad.mit.edu	36	5	3652401	3652401	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024337	exon2	c.G339A	p.T113T	.	.	.
IRX1	79192	broad.mit.edu	36	5	3652770	3652770	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024337	exon2	c.C708T	p.H236H	.	.	.
NUP155	9631	broad.mit.edu	36	5	37361761	37361761	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153485	exon19	c.C2090T	p.A697V	.	.	.
NUP155	9631	broad.mit.edu	36	5	37387148	37387148	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153485	exon6	c.T624C	p.L208L	.	.	.
EGFLAM	133584	broad.mit.edu	36	5	38443730	38443730	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182798	exon4	c.C512A	p.S171Y	.	.	.
EGFLAM	133584	broad.mit.edu	36	5	38460878	38460878	+	De_novo_Start_OutOfFrame	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182798	exon8	c.C1035A	p.T345T	.	.	.
LIFR	3977	broad.mit.edu	36	5	38539939	38539939	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127671	exon10	c.A1333C	p.N445H	.	.	.
FYB	2533	broad.mit.edu	36	5	39238183	39238183	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199335	exon2	c.G637A	p.E213K	.	.	.
C5orf51	285636	broad.mit.edu	36	5	41953113	41953113	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175921	exon6	c.G840A	p.T280T	.	.	.
MGC42105	167359	broad.mit.edu	36	5	43316334	43316334	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153361	exon4	c.G1057T	p.E353X	.	.	.
C5orf28	64417	broad.mit.edu	36	5	43482245	43482245	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022483	exon3	c.C484T	p.R162C	.	.	.
C5orf55	116349	broad.mit.edu	36	5	495848	495848	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138464	exon1	c.G90A	p.G30G	.	.	.
ADAMTS16	170690	broad.mit.edu	36	5	5244843	5244843	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139056	exon8	c.C1253T	p.T418M	.	.	.
ADAMTS16	170690	broad.mit.edu	36	5	5295285	5295285	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139056	exon17	c.C2643T	p.C881C	.	.	.
ADAMTS16	170690	broad.mit.edu	36	5	5315868	5315868	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139056	exon18	c.C2761T	p.P921S	.	.	.
DHX29	54505	broad.mit.edu	36	5	54602167	54602167	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019030	exon19	c.G2989T	p.E997X	.	.	.
DHX29	54505	broad.mit.edu	36	5	54606273	54606273	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019030	exon16	c.C2616A	p.I872I	.	.	.
DHX29	54505	broad.mit.edu	36	5	54606463	54606463	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019030	exon15	c.C2560A	p.L854I	.	.	.
IL31RA	133396	broad.mit.edu	36	5	55246502	55246502	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139017	exon14	c.G1807A	p.D603N	.	.	.
MIER3	166968	broad.mit.edu	36	5	56270493	56270493	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152622	exon4	c.G289T	p.E97X	.	.	.
ACTBL2	345651	broad.mit.edu	36	5	56813266	56813266	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017992	exon1	c.T1026G	p.I342M	.	.	.
PDE4D	5144	broad.mit.edu	36	5	58516820	58516820	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197219	exon4	c.G344A	p.R115Q	.	.	.
IPO11	51194	broad.mit.edu	36	5	61825694	61825694	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134779	exon16	c.G1696T	p.D566Y	.	.	.
ADAMTS6	11174	broad.mit.edu	36	5	64546913	64546913	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_197941	exon19	c.C2430T	p.I810I	.	.	.
TRIM23	373	broad.mit.edu	36	5	64941004	64941004	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033228	exon6	c.G866A	p.R289Q	.	.	.
ERBB2IP	55914	broad.mit.edu	36	5	65378058	65378058	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018695	exon18	c.T1724C	p.V575A	.	.	.
CDK7	1022	broad.mit.edu	36	5	68567026	68567026	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001799	exon2	c.C116T	p.A39V	.	.	.
OCLN	4950	broad.mit.edu	36	5	68841201	68841201	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002538	exon3	c.G528C	p.V176V	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71528156	71528156	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005909	exon5	c.G3218A	p.G1073E	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71531653	71531653	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005909	exon5	c.C6715A	p.L2239M	.	.	.
PTCD2	79810	broad.mit.edu	36	5	71689942	71689942	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024754	exon10	c.C1099T	p.L367L	.	.	.
TNPO1	3842	broad.mit.edu	36	5	72224993	72224993	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153188	exon17	c.C1906T	p.P636S	.	.	.
FCHO2	115548	broad.mit.edu	36	5	72384049	72384049	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146032	exon12	c.A1033C	p.K345Q	.	.	.
FCHO2	115548	broad.mit.edu	36	5	72400309	72400309	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146032	exon18	c.C1427A	p.S476Y	.	.	.
COL4A3BP	10087	broad.mit.edu	36	5	74717502	74717502	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130105	exon14	c.C1782T	p.D594D	.	.	.
SV2C	22987	broad.mit.edu	36	5	75657016	75657016	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014979	exon13	c.C2072A	p.S691Y	.	.	.
IQGAP2	10788	broad.mit.edu	36	5	75932439	75932439	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006633	exon11	c.C1118T	p.S373F	.	.	.
PDE8B	8622	broad.mit.edu	36	5	76736356	76736356	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003719	exon12	c.G1266A	p.S422S	.	.	.
ADCY2	108	broad.mit.edu	36	5	7751384	7751384	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020546	exon7	c.A1006T	p.I336F	.	.	.
AP3B1	8546	broad.mit.edu	36	5	77547672	77547672	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003664	exon7	c.G749A	p.R250Q	.	.	.
ADCY2	108	broad.mit.edu	36	5	7826192	7826192	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020546	exon18	c.T2362C	p.Y788H	.	.	.
DMGDH	29958	broad.mit.edu	36	5	78329667	78329667	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013391	exon16	c.A2595C	p.K865N	.	.	.
DMGDH	29958	broad.mit.edu	36	5	78355890	78355890	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013391	exon14	c.C2210A	p.P737H	.	.	.
DMGDH	29958	broad.mit.edu	36	5	78376050	78376050	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013391	exon6	c.C827T	p.S276L	.	.	.
DMGDH	29958	broad.mit.edu	36	5	78387433	78387433	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013391	exon3	c.G331T	p.D111Y	.	.	.
BHMT2	23743	broad.mit.edu	36	5	78410950	78410950	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178005	exon3	c.C169T	p.R57C	.	.	.
PAPD4	167153	broad.mit.edu	36	5	78951652	78951652	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114394	exon3	c.C217T	p.R73X	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79066449	79066449	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153610	exon2	c.T6105C	p.D2035D	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79090431	79090431	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153610	exon7	c.C11210A	p.S3737X	.	.	.
FASTKD3	79072	broad.mit.edu	36	5	7920000	7920000	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024091	exon2	c.A1197C	p.Q399H	.	.	.
SPZ1	84654	broad.mit.edu	36	5	79652505	79652505	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032567	exon1	c.G715T	p.E239X	.	.	.
ZFYVE16	9765	broad.mit.edu	36	5	79804404	79804404	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105251	exon16	c.G4093T	p.D1365Y	.	.	.
RASGRF2	5924	broad.mit.edu	36	5	80511803	80511803	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006909	exon18	c.G2740T	p.A914S	.	.	.
ACOT12	134526	broad.mit.edu	36	5	80662442	80662442	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130767	exon14	c.G1465T	p.E489X	.	.	.
RPS23	6228	broad.mit.edu	36	5	81609316	81609316	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025	exon2	c.A116C	p.N39T	.	.	.
XRCC4	7518	broad.mit.edu	36	5	82536478	82536478	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022406	exon6	c.C727T	p.L243F	.	.	.
VCAN	1462	broad.mit.edu	36	5	82868907	82868907	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164097	exon7	c.C1368A	p.F456L	.	.	.
VCAN	1462	broad.mit.edu	36	5	82871235	82871235	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164097	exon7	c.A3696G	p.E1232E	.	.	.
VCAN	1462	broad.mit.edu	36	5	82873840	82873840	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164097	exon7	c.C6301A	p.P2101T	.	.	.
HAPLN1	1404	broad.mit.edu	36	5	82973156	82973156	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001884	exon5	c.C980A	p.P327H	.	.	.
RASA1	5921	broad.mit.edu	36	5	86708468	86708468	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002890	exon17	c.G2199A	p.K733K	.	.	.
CCNH	902	broad.mit.edu	36	5	86742831	86742831	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001239	exon2	c.C206T	p.S69L	.	.	.
MEF2C	4208	broad.mit.edu	36	5	88063453	88063453	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193350	exon7	c.G659A	p.R220Q	.	.	.
GPR98	84059	broad.mit.edu	36	5	90028688	90028688	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032119	exon34	c.G8124T	p.Q2708H	.	.	.
GPR98	84059	broad.mit.edu	36	5	90043888	90043888	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032119	exon42	c.A9071G	p.Y3024C	.	.	.
ARRDC3	57561	broad.mit.edu	36	5	90705711	90705711	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020801	exon6	c.T1009G	p.L337V	.	.	.
C5orf36	285600	broad.mit.edu	36	5	93882005	93882005	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145678	exon5	c.G674T	p.W225L	.	.	.
CAST	831	broad.mit.edu	36	5	96101525	96101525	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173060	exon9	c.G511T	p.E171X	.	.	.
LIX1	167410	broad.mit.edu	36	5	96456336	96456336	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153234	exon6	c.G721T	p.E241X	.	.	.
CHD1	1105	broad.mit.edu	36	5	98220285	98220285	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001270	exon35	c.G4832T	p.R1611M	.	.	.
CHD1	1105	broad.mit.edu	36	5	98237202	98237202	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001270	exon25	c.G3566A	p.R1189Q	.	.	.
USP45	85015	broad.mit.edu	36	6	100000610	100000610	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080481	exon14	c.T1759G	p.L587V	.	.	.
SIM1	6492	broad.mit.edu	36	6	100945086	100945086	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005068	exon11	c.G2173A	p.E725K	.	.	.
ASCC3	10973	broad.mit.edu	36	6	101064581	101064581	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006828	exon41	c.C6409T	p.R2137X	.	.	.
ATG5	9474	broad.mit.edu	36	6	106741143	106741143	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004849	exon8	c.C793A	p.L265I	.	.	.
ATG5	9474	broad.mit.edu	36	6	106870761	106870761	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004849	exon2	c.G16T	p.D6Y	.	.	.
GCNT2	2651	broad.mit.edu	36	6	10734777	10734777	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145655	exon3	c.G1160T	p.R387I	.	.	.
SOBP	55084	broad.mit.edu	36	6	107934240	107934240	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018013	exon3	c.G337T	p.D113Y	.	.	.
ARMC2	84071	broad.mit.edu	36	6	109332251	109332251	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032131	exon8	c.G973T	p.D325Y	.	.	.
FIG4	9896	broad.mit.edu	36	6	110217513	110217513	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014845	exon19	c.G2120T	p.G707V	.	.	.
REV3L	5980	broad.mit.edu	36	6	111795276	111795276	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002912	exon14	c.C6408A	p.S2136S	.	.	.
WISP3	8838	broad.mit.edu	36	6	112492820	112492820	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198239	exon3	c.G570T	p.K190N	.	.	.
WISP3	8838	broad.mit.edu	36	6	112496268	112496268	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198239	exon4	c.G811A	p.D271N	.	.	.
C6orf225	619208	broad.mit.edu	36	6	112528635	112528635	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033564	exon4	c.A195G	p.T65T	.	.	.
LAMA4	3910	broad.mit.edu	36	6	112557839	112557839	+	Silent	SNP	G	A	A	rs34753919	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105207	exon30	c.C4044T	p.F1348F	.	.	.
FAM26E	254228	broad.mit.edu	36	6	116943526	116943526	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153711	exon2	c.G611A	p.R204Q	.	.	.
RSPH4A	345895	broad.mit.edu	36	6	117060087	117060087	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010892	exon6	c.C1941A	p.G647G	.	.	.
GPRC6A	222545	broad.mit.edu	36	6	117223647	117223647	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148963	exon5	c.G1593T	p.M531I	.	.	.
GPRC6A	222545	broad.mit.edu	36	6	117234243	117234243	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148963	exon3	c.G1318A	p.A440T	.	.	.
RFX6	222546	broad.mit.edu	36	6	117344124	117344124	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173560	exon9	c.C926A	p.P309H	.	.	.
RFX6	222546	broad.mit.edu	36	6	117352542	117352542	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173560	exon15	c.C1573T	p.R525X	.	.	.
RFX6	222546	broad.mit.edu	36	6	117353312	117353312	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173560	exon16	c.C1682T	p.A561V	.	.	.
ROS1	6098	broad.mit.edu	36	6	117813629	117813629	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002944	exon15	c.G2214T	p.E738D	.	.	.
ROS1	6098	broad.mit.edu	36	6	117817395	117817395	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002944	exon12	c.T1570C	p.S524P	.	.	.
ROS1	6098	broad.mit.edu	36	6	117822530	117822530	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002944	exon9	c.A921T	p.K307N	.	.	.
DCBLD1	285761	broad.mit.edu	36	6	117947797	117947797	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173674	exon3	c.G451A	p.D151N	.	.	.
C6orf204	387119	broad.mit.edu	36	6	118911699	118911699	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178035	exon8	c.C1462T	p.R488X	.	.	.
ASF1A	25842	broad.mit.edu	36	6	119270383	119270383	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014034	exon3	c.C413A	p.S138Y	.	.	.
FAM184A	79632	broad.mit.edu	36	6	119379789	119379789	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024581	exon5	c.G1352T	p.R451I	.	.	.
C6orf170	221322	broad.mit.edu	36	6	121604384	121604384	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152730	exon19	c.A2171C	p.K724T	.	.	.
RNF146	81847	broad.mit.edu	36	6	127650259	127650259	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030963	exon5	c.C805A	p.H269N	.	.	.
KIAA0408	9729	broad.mit.edu	36	6	127809815	127809815	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014702	exon5	c.A1342C	p.T448P	.	.	.
C6orf174	387104	broad.mit.edu	36	6	127879307	127879307	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012279	exon2	c.C146T	p.S49L	.	.	.
C6orf58	352999	broad.mit.edu	36	6	127954402	127954402	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010905	exon6	c.C935A	p.S312Y	.	.	.
PTPRK	5796	broad.mit.edu	36	6	128441729	128441729	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002844	exon11	c.T1805C	p.V602A	.	.	.
PTPRK	5796	broad.mit.edu	36	6	128445307	128445307	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002844	exon10	c.C1745T	p.A582V	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129614992	129614992	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079823	exon14	c.T1955C	p.V652A	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129801551	129801551	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079823	exon42	c.C6036A	p.L2012L	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129877407	129877407	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079823	exon63	c.A9173G	p.D3058G	.	.	.
EPB41L2	2037	broad.mit.edu	36	6	131247958	131247958	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135555	exon12	c.G1804A	p.A602T	.	.	.
MED23	9439	broad.mit.edu	36	6	131953238	131953238	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015979	exon28	c.G3742A	p.E1248K	.	.	.
MED23	9439	broad.mit.edu	36	6	131954258	131954258	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015979	exon27	c.G3592T	p.D1198Y	.	.	.
MOXD1	26002	broad.mit.edu	36	6	132660740	132660740	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015529	exon11	c.C1556A	p.S519Y	.	.	.
TAAR9	134860	broad.mit.edu	36	6	132901754	132901754	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175057	exon1	c.C633T	p.V211V	.	.	.
PHACTR1	221692	broad.mit.edu	36	6	13290884	13290884	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030948	exon6	c.C651A	p.I217I	.	.	.
TAAR8	83551	broad.mit.edu	36	6	132916324	132916324	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053278	exon1	c.T800C	p.V267A	.	.	.
SLC2A12	154091	broad.mit.edu	36	6	134391947	134391947	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145176	exon2	c.C709A	p.L237I	.	.	.
ALDH8A1	64577	broad.mit.edu	36	6	135281297	135281297	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170771	exon6	c.G1251T	p.K417N	.	.	.
FAM54A	113115	broad.mit.edu	36	6	136596236	136596236	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138419	exon7	c.G964A	p.A322T	.	.	.
MAP3K5	4217	broad.mit.edu	36	6	137022120	137022120	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005923	exon9	c.G1456A	p.V486I	.	.	.
SLC35D3	340146	broad.mit.edu	36	6	137287427	137287427	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008783	exon2	c.C1151T	p.S384L	.	.	.
IFNGR1	3459	broad.mit.edu	36	6	137563759	137563759	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000416	exon6	c.G813T	p.K271N	.	.	.
KIAA1244	57221	broad.mit.edu	36	6	138649545	138649545	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020340	exon16	c.C2584T	p.R862C	.	.	.
CCDC28A	25901	broad.mit.edu	36	6	139148062	139148062	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015439	exon4	c.G598T	p.E200X	.	.	.
REPS1	85021	broad.mit.edu	36	6	139283074	139283074	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031922	exon12	c.C1499T	p.S500L	.	.	.
REPS1	85021	broad.mit.edu	36	6	139306829	139306829	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031922	exon6	c.G770A	p.R257Q	.	.	.
TXLNB	167838	broad.mit.edu	36	6	139633342	139633342	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153235	exon4	c.C631T	p.R211X	.	.	.
CITED2	10370	broad.mit.edu	36	6	139736093	139736093	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168388	exon2	c.C682A	p.L228I	.	.	.
HIVEP2	3097	broad.mit.edu	36	6	143132856	143132856	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006734	exon5	c.C4713T	p.I1571I	.	.	.
ADAT2	134637	broad.mit.edu	36	6	143791297	143791297	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182503	exon6	c.C572A	p.S191Y	.	.	.
FUCA2	2519	broad.mit.edu	36	6	143870227	143870227	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032020	exon2	c.G252A	p.P84P	.	.	.
FBXO30	84085	broad.mit.edu	36	6	146168564	146168564	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032145	exon2	c.C671T	p.A224V	.	.	.
TAB2	23118	broad.mit.edu	36	6	149741757	149741757	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015093	exon5	c.C1013A	p.S338Y	.	.	.
RAET1E	135250	broad.mit.edu	36	6	150252836	150252836	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139165	exon2	c.G224A	p.G75D	.	.	.
ULBP1	80329	broad.mit.edu	36	6	150326945	150326945	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025218	exon1	c.T67C	p.S23P	.	.	.
IYD	389434	broad.mit.edu	36	6	150755325	150755325	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164695	exon3	c.G522T	p.K174N	.	.	.
MTHFD1L	25902	broad.mit.edu	36	6	151299756	151299756	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015440	exon12	c.G1380A	p.T460T	.	.	.
AKAP12	9590	broad.mit.edu	36	6	151711633	151711633	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005100	exon4	c.G414A	p.G138G	.	.	.
AKAP12	9590	broad.mit.edu	36	6	151715063	151715063	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005100	exon4	c.G3844A	p.E1282K	.	.	.
C6orf211	79624	broad.mit.edu	36	6	151821189	151821189	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024573	exon3	c.C181A	p.L61I	.	.	.
C6orf97	80129	broad.mit.edu	36	6	151959288	151959288	+	Silent	SNP	G	A	A	rs3757321	byHapMap	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025059	exon9	c.G1593A	p.A531A	.	.	.
ESR1	2099	broad.mit.edu	36	6	152461562	152461562	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122740	exon9	c.A1556G	p.N519S	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152640981	152640981	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015293	exon13	c.G2081T	p.R694I	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152644643	152644643	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015293	exon12	c.G1945A	p.D649N	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152646899	152646899	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015293	exon11	c.G1686A	p.A562A	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152686460	152686460	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon81	c.G15550A	p.D5184N	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152721248	152721248	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon66	c.C10582A	p.L3528I	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152764168	152764168	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon47	c.T6848G	p.F2283C	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152767097	152767097	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon46	c.A6790G	p.K2264E	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152770006	152770006	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon45	c.G6580T	p.E2194X	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152810371	152810371	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon29	c.C3605A	p.S1202Y	.	.	.
TIAM2	26230	broad.mit.edu	36	6	155500377	155500377	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012454	exon4	c.G1569T	p.K523N	.	.	.
ARID1B	57492	broad.mit.edu	36	6	157543948	157543948	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017519	exon11	c.C3250T	p.P1084S	.	.	.
TULP4	56995	broad.mit.edu	36	6	158770861	158770861	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007466	exon3	c.G487A	p.E163K	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159556156	159556156	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032532	exon5	c.G652A	p.E218K	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159592337	159592337	+	Silent	SNP	G	A	A	rs45576631	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032532	exon17	c.G4848A	p.T1616T	.	.	.
MAS1	4142	broad.mit.edu	36	6	160248203	160248203	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002377	exon1	c.G226A	p.A76T	.	.	.
IGF2R	3482	broad.mit.edu	36	6	160404549	160404549	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000876	exon27	c.C3783A	p.V1261V	.	.	.
LPA	4018	broad.mit.edu	36	6	160932004	160932004	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005577	exon24	c.C3749A	p.S1250X	.	.	.
MAP3K4	4216	broad.mit.edu	36	6	161390118	161390118	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006724	exon3	c.G824A	p.R275Q	.	.	.
PARK2	5071	broad.mit.edu	36	6	161910430	161910430	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004562	exon8	c.C880T	p.P294S	.	.	.
QKI	9444	broad.mit.edu	36	6	163907746	163907746	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006775	exon7	c.C938T	p.A313V	.	.	.
UNC93A	54346	broad.mit.edu	36	6	167648775	167648775	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143947	exon7	c.G1093A	p.V365M	.	.	.
MLLT4	4301	broad.mit.edu	36	6	168095296	168095296	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040000	exon29	c.C4392T	p.P1464P	.	.	.
FRMD1	79981	broad.mit.edu	36	6	168210334	168210334	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122841	exon4	c.C207T	p.F69F	.	.	.
WDR27	253769	broad.mit.edu	36	6	169806268	169806268	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182552	exon8	c.C823T	p.R275C	.	.	.
TCTE3	6991	broad.mit.edu	36	6	169886287	169886287	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174910	exon2	c.G129A	p.Q43Q	.	.	.
FAM120B	84498	broad.mit.edu	36	6	170468775	170468775	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032448	exon2	c.G372A	p.E124E	.	.	.
FAM8A1	51439	broad.mit.edu	36	6	17713155	17713155	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016255	exon3	c.A873C	p.E291D	.	.	.
NUP153	9972	broad.mit.edu	36	6	17814493	17814493	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005124	exon1	c.G105A	p.Q35Q	.	.	.
DCDC2	51473	broad.mit.edu	36	6	24465740	24465740	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195610	exon2	c.G218A	p.R73Q	.	.	.
LRRC16A	55604	broad.mit.edu	36	6	25689536	25689536	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017640	exon31	c.C2896T	p.R966W	.	.	.
HIST1H3C	8352	broad.mit.edu	36	6	26153768	26153768	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003531	exon1	c.G151A	p.E51K	.	.	.
PRSS16	10279	broad.mit.edu	36	6	27324908	27324908	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005865	exon4	c.G388C	p.E130Q	.	.	.
ZNF391	346157	broad.mit.edu	36	6	27476189	27476189	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001076781	exon3	c.G61A	p.E21K	.	.	.
ZKSCAN4	387032	broad.mit.edu	36	6	28321555	28321555	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019110	exon5	c.G956A	p.R319Q	.	.	.
ZNF311	282890	broad.mit.edu	36	6	29071968	29071968	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010877	exon7	c.C790T	p.L264F	.	.	.
OR2J3	442186	broad.mit.edu	36	6	29187925	29187925	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005216	exon1	c.G279T	p.K93N	.	.	.
OR2J2	26707	broad.mit.edu	36	6	29250190	29250190	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030905	exon1	c.A799C	p.N267H	.	.	.
OR5V1	81696	broad.mit.edu	36	6	29431888	29431888	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030876	exon1	c.G64T	p.E22X	.	.	.
OR12D3	81797	broad.mit.edu	36	6	29450444	29450444	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030959	exon1	c.C600A	p.V200V	.	.	.
OR2H2	7932	broad.mit.edu	36	6	29664309	29664309	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007160	exon1	c.C609A	p.F203L	.	.	.
MOG	4340	broad.mit.edu	36	6	29746476	29746476	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206812	exon6	c.A612G	p.L204L	.	.	.
TUBB2A	7280	broad.mit.edu	36	6	3099126	3099126	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001069	exon4	c.C1308T	p.F436F	.	.	.
CCHCR1	54535	broad.mit.edu	36	6	31230500	31230500	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105563	exon4	c.C445T	p.R149W	.	.	.
HLA-DRA	3122	broad.mit.edu	36	6	32518334	32518334	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019111	exon2	c.G214T	p.E72X	.	.	.
HLA-DRA	3122	broad.mit.edu	36	6	32518978	32518978	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019111	exon3	c.G367T	p.E123X	.	.	.
HSD17B8	7923	broad.mit.edu	36	6	33282398	33282398	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014234	exon9	c.C775A	p.L259I	.	.	.
ITPR3	3710	broad.mit.edu	36	6	33761983	33761983	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002224	exon42	c.G5843T	p.C1948F	.	.	.
GRM4	2914	broad.mit.edu	36	6	34209209	34209209	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000841	exon1	c.C43T	p.P15S	.	.	.
C6orf106	64771	broad.mit.edu	36	6	34772261	34772261	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022758	exon1	c.G98T	p.R33M	.	.	.
SCUBE3	222663	broad.mit.edu	36	6	35321123	35321123	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152753	exon19	c.G2542T	p.E848X	.	.	.
FKBP5	2289	broad.mit.edu	36	6	35655891	35655891	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145775	exon10	c.C926T	p.S309L	.	.	.
SRPK1	6732	broad.mit.edu	36	6	35911240	35911240	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003137	exon16	c.A1787G	p.D596G	.	.	.
CPNE5	57699	broad.mit.edu	36	6	36875781	36875781	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020939	exon4	c.C228T	p.F76F	.	.	.
C6orf89	221477	broad.mit.edu	36	6	36990371	36990371	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152734	exon5	c.G640T	p.E214X	.	.	.
MDGA1	266727	broad.mit.edu	36	6	37721697	37721697	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153487	exon12	c.G2238A	p.P746P	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38970605	38970605	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001371	exon57	c.G8083A	p.V2695I	.	.	.
PECI	10455	broad.mit.edu	36	6	4071459	4071459	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206836	exon6	c.T583G	p.Y195D	.	.	.
TREM1	54210	broad.mit.edu	36	6	41358252	41358252	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018643	exon2	c.G265A	p.D89N	.	.	.
GUCA1B	2979	broad.mit.edu	36	6	42264323	42264323	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002098	exon2	c.G332A	p.R111H	.	.	.
TRERF1	55809	broad.mit.edu	36	6	42332525	42332525	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033502	exon12	c.C2499T	p.C833C	.	.	.
TRERF1	55809	broad.mit.edu	36	6	42344766	42344766	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033502	exon5	c.C541A	p.L181I	.	.	.
PRPH2	5961	broad.mit.edu	36	6	42797503	42797503	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000322	exon1	c.G548A	p.R183H	.	.	.
PTK7	5754	broad.mit.edu	36	6	43204842	43204842	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152880	exon2	c.C229T	p.R77W	.	.	.
PTK7	5754	broad.mit.edu	36	6	43219154	43219154	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152880	exon13	c.C1949T	p.S650L	.	.	.
CUL9	23113	broad.mit.edu	36	6	43263458	43263458	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015089	exon7	c.C1611A	p.I537I	.	.	.
CUL9	23113	broad.mit.edu	36	6	43274562	43274562	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015089	exon12	c.C3041A	p.S1014Y	.	.	.
ZNF318	24149	broad.mit.edu	36	6	43413076	43413076	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014345	exon10	c.C6638T	p.S2213L	.	.	.
TMEM63B	55362	broad.mit.edu	36	6	44225594	44225594	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018426	exon16	c.C1434A	p.F478L	.	.	.
TDRD6	221400	broad.mit.edu	36	6	46767023	46767023	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010870	exon1	c.T3199G	p.F1067V	.	.	.
PLA2G7	7941	broad.mit.edu	36	6	46786257	46786257	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168357	exon8	c.A761G	p.D254G	.	.	.
CDYL	9425	broad.mit.edu	36	6	4888785	4888785	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143970	exon5	c.C732T	p.F244F	.	.	.
RHAG	6005	broad.mit.edu	36	6	49693779	49693779	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000324	exon3	c.C453A	p.F151L	.	.	.
CRISP3	10321	broad.mit.edu	36	6	49809477	49809477	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006061	exon5	c.C360T	p.S120S	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51632688	51632688	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138694	exon61	c.C10195A	p.L3399M	.	.	.
EFHC1	114327	broad.mit.edu	36	6	52426966	52426966	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018100	exon5	c.G838A	p.E280K	.	.	.
GSTA5	221357	broad.mit.edu	36	6	52809012	52809012	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153699	exon4	c.G253T	p.D85Y	.	.	.
FBXO9	26268	broad.mit.edu	36	6	53070543	53070543	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012347	exon12	c.G1300A	p.A434T	.	.	.
TINAG	27283	broad.mit.edu	36	6	54281538	54281538	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014464	exon1	c.G231A	p.A77A	.	.	.
HCRTR2	3062	broad.mit.edu	36	6	55147450	55147450	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001526	exon1	c.G106A	p.D36N	.	.	.
GFRAL	389400	broad.mit.edu	36	6	55331816	55331816	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207410	exon6	c.T873C	p.C291C	.	.	.
COL21A1	81578	broad.mit.edu	36	6	56033525	56033525	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030820	exon27	c.C2380T	p.R794X	.	.	.
DST	667	broad.mit.edu	36	6	56525647	56525647	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015548	exon42	c.C8033T	p.S2678L	.	.	.
KIAA1586	57691	broad.mit.edu	36	6	57023564	57023564	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020931	exon3	c.G139A	p.D47N	.	.	.
ZNF451	26036	broad.mit.edu	36	6	57120231	57120231	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015555	exon10	c.G1389T	p.Q463H	.	.	.
LGSN	51557	broad.mit.edu	36	6	64048544	64048544	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016571	exon4	c.G871T	p.E291X	.	.	.
EYS	346007	broad.mit.edu	36	6	66101727	66101727	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198283	exon10	c.G1633T	p.E545X	.	.	.
EYS	346007	broad.mit.edu	36	6	66257267	66257267	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198283	exon4	c.G803T	p.G268V	.	.	.
COL9A1	1297	broad.mit.edu	36	6	71040478	71040478	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001851	exon12	c.G1058T	p.G353V	.	.	.
COL9A1	1297	broad.mit.edu	36	6	71041191	71041191	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001851	exon11	c.A981C	p.L327F	.	.	.
FAM135A	57579	broad.mit.edu	36	6	71291841	71291841	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001162529	exon13	c.C2333T	p.S778F	.	.	.
B3GAT2	135152	broad.mit.edu	36	6	71628290	71628290	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080742	exon3	c.C849T	p.V283V	.	.	.
B3GAT2	135152	broad.mit.edu	36	6	71722581	71722581	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080742	exon1	c.C273T	p.R91R	.	.	.
RIMS1	22999	broad.mit.edu	36	6	73024580	73024580	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168409	exon12	c.A981C	p.K327N	.	.	.
RIMS1	22999	broad.mit.edu	36	6	73157024	73157024	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168409	exon18	c.C1574T	p.S525L	.	.	.
RIMS1	22999	broad.mit.edu	36	6	73167102	73167102	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168409	exon22	c.G2248T	p.E750X	.	.	.
DDX43	55510	broad.mit.edu	36	6	74180212	74180212	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018665	exon12	c.C1479T	p.F493F	.	.	.
CD109	135228	broad.mit.edu	36	6	74496850	74496850	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133493	exon4	c.G339T	p.E113D	.	.	.
CD109	135228	broad.mit.edu	36	6	74529191	74529191	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133493	exon9	c.G862T	p.G288X	.	.	.
CD109	135228	broad.mit.edu	36	6	74546916	74546916	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133493	exon16	c.T1876C	p.F626L	.	.	.
CD109	135228	broad.mit.edu	36	6	74584897	74584897	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133493	exon31	c.T3977C	p.V1326A	.	.	.
DSP	1832	broad.mit.edu	36	6	7525157	7525157	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004415	exon23	c.A3735G	p.E1245E	.	.	.
DSP	1832	broad.mit.edu	36	6	7528549	7528549	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008844	exon24	c.G4258A	p.A1420T	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75891677	75891677	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004370	exon40	c.G6493T	p.E2165X	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75947641	75947641	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004370	exon11	c.T1898C	p.V633A	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75950059	75950059	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004370	exon10	c.G1318A	p.D440N	.	.	.
TMEM30A	55754	broad.mit.edu	36	6	76025300	76025300	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018247	exon6	c.C808T	p.R270C	.	.	.
PHIP	55023	broad.mit.edu	36	6	79737289	79737289	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017934	exon25	c.C2925T	p.V975V	.	.	.
LCA5	167691	broad.mit.edu	36	6	80254141	80254141	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181714	exon9	c.G1393T	p.E465X	.	.	.
SH3BGRL2	83699	broad.mit.edu	36	6	80440124	80440124	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031469	exon2	c.A120G	p.T40T	.	.	.
TTK	7272	broad.mit.edu	36	6	80801566	80801566	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166691	exon15	c.G1757A	p.R586Q	.	.	.
TTK	7272	broad.mit.edu	36	6	80806273	80806273	+	Missense_Mutation	SNP	G	A	A	rs2230512	byFrequency	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166691	exon19	c.G2269A	p.D757N	.	.	.
ME1	4199	broad.mit.edu	36	6	83978413	83978413	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002395	exon14	c.T1668C	p.C556C	.	.	.
PRSS35	167681	broad.mit.edu	36	6	84290591	84290591	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170423	exon3	c.C712T	p.R238W	.	.	.
SNAP91	9892	broad.mit.edu	36	6	84359923	84359923	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014841	exon17	c.C1689A	p.I563I	.	.	.
SNAP91	9892	broad.mit.edu	36	6	84367873	84367873	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014841	exon15	c.C1160A	p.S387Y	.	.	.
SNAP91	9892	broad.mit.edu	36	6	84428856	84428856	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014841	exon4	c.T278G	p.F93C	.	.	.
MRAP2	112609	broad.mit.edu	36	6	84821881	84821881	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138409	exon2	c.A125C	p.K42T	.	.	.
TBX18	9096	broad.mit.edu	36	6	85514476	85514476	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080508	exon5	c.C820T	p.R274C	.	.	.
HTR1E	3354	broad.mit.edu	36	6	87782466	87782466	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000865	exon2	c.C695A	p.S232Y	.	.	.
PM20D2	135293	broad.mit.edu	36	6	89928576	89928576	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010853	exon7	c.C1186T	p.R396W	.	.	.
MDN1	23195	broad.mit.edu	36	6	90451324	90451324	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014611	exon71	c.G11821T	p.E3941X	.	.	.
CASP8AP2	9994	broad.mit.edu	36	6	90633697	90633697	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001137667	exon8	c.C3967A	p.L1323I	.	.	.
MAP3K7	6885	broad.mit.edu	36	6	91283066	91283066	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003188	exon16	c.C1615T	p.R539C	.	.	.
FUT9	10690	broad.mit.edu	36	6	96758491	96758491	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006581	exon3	c.T739G	p.S247A	.	.	.
KLHL32	114792	broad.mit.edu	36	6	97668873	97668873	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052904	exon7	c.G1121A	p.R374H	.	.	.
C6orf167	253714	broad.mit.edu	36	6	97809308	97809308	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198468	exon10	c.A965C	p.K322T	.	.	.
HLA-A	3105	broad.mit.edu	36	6	30019157	30019161	+	Frame_Shift_Del	DEL	GGCGG	-	-	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	GGCGG	GGCGG	GGCGG	-	GGCGG	GGCGG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002116	exon3	c.477_481del	p.159_161del	.	.	.
MIR133B	442890	broad.mit.edu	36	6	52121746	52121746	+	RNA	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MIR30C2	407032	broad.mit.edu	36	6	72143432	72143432	+	RNA	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TFR2	7036	broad.mit.edu	36	7	100066467	100066467	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003227	exon9	c.C1251T	p.I417I	.	.	.
ACTL6B	51412	broad.mit.edu	36	7	100090650	100090650	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016188	exon4	c.C297T	p.I99I	.	.	.
MUC17	140453	broad.mit.edu	36	7	100468376	100468376	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040105	exon3	c.C6959A	p.P2320H	.	.	.
FBXL13	222235	broad.mit.edu	36	7	102340871	102340871	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111038	exon11	c.T906C	p.S302S	.	.	.
LRRC17	10234	broad.mit.edu	36	7	102362206	102362206	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005824	exon2	c.C610T	p.R204W	.	.	.
NAPEPLD	222236	broad.mit.edu	36	7	102556392	102556392	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198990	exon2	c.A68G	p.K23R	.	.	.
SLC26A5	375611	broad.mit.edu	36	7	102818189	102818189	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206884	exon12	c.C1234A	p.L412I	.	.	.
RELN	5649	broad.mit.edu	36	7	102981490	102981490	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005045	exon39	c.T5822G	p.V1941G	.	.	.
RELN	5649	broad.mit.edu	36	7	102993111	102993111	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005045	exon34	c.C5060A	p.S1687Y	.	.	.
RELN	5649	broad.mit.edu	36	7	103125589	103125589	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005045	exon10	c.C1090A	p.L364I	.	.	.
MLL5	55904	broad.mit.edu	36	7	104491260	104491260	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182931	exon5	c.G413T	p.C138F	.	.	.
PUS7	54517	broad.mit.edu	36	7	104890365	104890365	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019042	exon14	c.C1696T	p.R566X	.	.	.
PIK3CG	5294	broad.mit.edu	36	7	106295954	106295954	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002649	exon2	c.G712A	p.D238N	.	.	.
BCAP29	55973	broad.mit.edu	36	7	107023571	107023571	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008405	exon4	c.T368G	p.L123R	.	.	.
LAMB4	22798	broad.mit.edu	36	7	107504685	107504685	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007356	exon17	c.C2064A	p.V688V	.	.	.
PNPLA8	50640	broad.mit.edu	36	7	107942357	107942357	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015723	exon4	c.C815A	p.P272H	.	.	.
THAP5	168451	broad.mit.edu	36	7	107992199	107992199	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130475	exon3	c.C860A	p.S287Y	.	.	.
DOCK4	9732	broad.mit.edu	36	7	111372162	111372162	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014705	exon10	c.G784T	p.D262Y	.	.	.
TMEM168	64418	broad.mit.edu	36	7	112212017	112212017	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022484	exon2	c.C100T	p.R34W	.	.	.
PPP1R3A	5506	broad.mit.edu	36	7	113345589	113345589	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002711	exon1	c.G699T	p.K233N	.	.	.
TFEC	22797	broad.mit.edu	36	7	115369245	115369245	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018058	exon6	c.G514T	p.E172X	.	.	.
THSD7A	221981	broad.mit.edu	36	7	11642959	11642959	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015204	exon2	c.C345T	p.C115C	.	.	.
ST7	7982	broad.mit.edu	36	7	116649263	116649263	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018412	exon14	c.C1480A	p.L494I	.	.	.
ASZ1	136991	broad.mit.edu	36	7	116794657	116794657	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130768	exon12	c.A1260C	p.K420N	.	.	.
CFTR	1080	broad.mit.edu	36	7	117017656	117017656	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000492	exon13	c.G1693T	p.D565Y	.	.	.
ANKRD7	56311	broad.mit.edu	36	7	117663391	117663391	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019644	exon4	c.C529A	p.L177I	.	.	.
KCND2	3751	broad.mit.edu	36	7	119702460	119702460	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012281	exon1	c.A538G	p.T180A	.	.	.
PTPRZ1	5803	broad.mit.edu	36	7	121439821	121439821	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002851	exon12	c.C3485A	p.S1162Y	.	.	.
PTPRZ1	5803	broad.mit.edu	36	7	121440293	121440293	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002851	exon12	c.T3957G	p.I1319M	.	.	.
AASS	10157	broad.mit.edu	36	7	121544187	121544187	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005763	exon7	c.G748T	p.E250X	.	.	.
CADPS2	93664	broad.mit.edu	36	7	121747610	121747610	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167940	exon30	c.C3748T	p.R1250X	.	.	.
CADPS2	93664	broad.mit.edu	36	7	122048785	122048785	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167940	exon5	c.T1090C	p.S364P	.	.	.
SLC13A1	6561	broad.mit.edu	36	7	122542827	122542827	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022444	exon15	c.G1769A	p.S590N	.	.	.
SLC13A1	6561	broad.mit.edu	36	7	122556723	122556723	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022444	exon9	c.A981C	p.K327N	.	.	.
WASL	8976	broad.mit.edu	36	7	123123914	123123914	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003941	exon6	c.A584C	p.K195T	.	.	.
GPR37	2861	broad.mit.edu	36	7	124174187	124174187	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005302	exon2	c.G1470T	p.M490I	.	.	.
POT1	25913	broad.mit.edu	36	7	124252584	124252584	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042594	exon17	c.G1357T	p.D453Y	.	.	.
GRM8	2918	broad.mit.edu	36	7	125960720	125960720	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127323	exon9	c.G1952A	p.R651Q	.	.	.
GRM8	2918	broad.mit.edu	36	7	126331948	126331948	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127323	exon4	c.G753T	p.Q251H	.	.	.
ZNF800	168850	broad.mit.edu	36	7	126800827	126800827	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176814	exon5	c.A1799G	p.Y600C	.	.	.
ZNF800	168850	broad.mit.edu	36	7	126802183	126802183	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176814	exon5	c.C443T	p.S148L	.	.	.
FAM71F1	84691	broad.mit.edu	36	7	128142735	128142735	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032599	exon1	c.T4G	p.L2V	.	.	.
FLNC	2318	broad.mit.edu	36	7	128266046	128266046	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001458	exon8	c.C1364T	p.A455V	.	.	.
IRF5	3663	broad.mit.edu	36	7	128375221	128375221	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098627	exon7	c.G942A	p.T314T	.	.	.
SMO	6608	broad.mit.edu	36	7	128632818	128632818	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005631	exon4	c.C879T	p.I293I	.	.	.
AHCYL2	23382	broad.mit.edu	36	7	128849960	128849960	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015328	exon13	c.C1505T	p.S502F	.	.	.
NRF1	4899	broad.mit.edu	36	7	129154318	129154318	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005011	exon10	c.G1225A	p.E409K	.	.	.
MKLN1	4289	broad.mit.edu	36	7	130732590	130732590	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013255	exon5	c.G425A	p.S142N	.	.	.
PODXL	5420	broad.mit.edu	36	7	130841216	130841216	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018111	exon8	c.C1430T	p.A477V	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131820171	131820171	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181775	exon5	c.C1513A	p.Q505K	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131843850	131843850	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181775	exon3	c.C143T	p.A48V	.	.	.
AKR1B1	231	broad.mit.edu	36	7	133780544	133780544	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001628	exon9	c.C894A	p.V298V	.	.	.
CALD1	800	broad.mit.edu	36	7	134276490	134276490	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033157	exon7	c.C807A	p.F269L	.	.	.
SLC13A4	26266	broad.mit.edu	36	7	135043531	135043531	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012450	exon3	c.C236T	p.A79V	.	.	.
UBN2	254048	broad.mit.edu	36	7	138596856	138596856	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173569	exon6	c.C1224T	p.F408F	.	.	.
ETV1	2115	broad.mit.edu	36	7	13942013	13942013	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163147	exon7	c.G399A	p.R133R	.	.	.
MKRN1	23608	broad.mit.edu	36	7	139805357	139805357	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145125	exon4	c.T690A	p.Y230X	.	.	.
KIAA1147	57189	broad.mit.edu	36	7	141011543	141011543	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080392	exon6	c.G865A	p.G289R	.	.	.
MGAM	8972	broad.mit.edu	36	7	141404526	141404526	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004668	exon31	c.C3748T	p.R1250C	.	.	.
KEL	3792	broad.mit.edu	36	7	142349656	142349656	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000420	exon18	c.G2024A	p.R675Q	.	.	.
CLCN1	1180	broad.mit.edu	36	7	142746752	142746752	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000083	exon14	c.G1498T	p.E500X	.	.	.
OR2A5	393046	broad.mit.edu	36	7	143378664	143378664	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012365	exon1	c.G237T	p.K79N	.	.	.
OR2A7	401427	broad.mit.edu	36	7	143586953	143586953	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005328	exon1	c.G702A	p.R234R	.	.	.
NOBOX	135935	broad.mit.edu	36	7	143728275	143728275	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080413	exon3	c.G653A	p.R218Q	.	.	.
NOBOX	135935	broad.mit.edu	36	7	143729089	143729089	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080413	exon2	c.G572A	p.R191Q	.	.	.
NOBOX	135935	broad.mit.edu	36	7	143729155	143729155	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080413	exon2	c.G506A	p.S169N	.	.	.
DGKB	1607	broad.mit.edu	36	7	14627584	14627584	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145695	exon14	c.G1231T	p.D411Y	.	.	.
CNTNAP2	26047	broad.mit.edu	36	7	146372000	146372000	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014141	exon4	c.C471A	p.R157R	.	.	.
CNTNAP2	26047	broad.mit.edu	36	7	146460314	146460314	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014141	exon8	c.C1128T	p.V376V	.	.	.
INTS1	26173	broad.mit.edu	36	7	1479836	1479836	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080453	exon42	c.G5849A	p.R1950H	.	.	.
LOC155060	155060	broad.mit.edu	36	7	148594626	148594626	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001195220	exon2	c.G292A	p.V98M	.	.	.
ZNF777	27153	broad.mit.edu	36	7	148764825	148764825	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015694	exon5	c.C1113T	p.I371I	.	.	.
ZNF467	168544	broad.mit.edu	36	7	149098572	149098572	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207336	exon3	c.C41A	p.S14Y	.	.	.
SSPO	23145	broad.mit.edu	36	7	149143716	149143716	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198455	exon72	c.C10800A	p.P3600P	.	.	.
ZNF862	643641	broad.mit.edu	36	7	149176123	149176123	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099220	exon4	c.T608C	p.V203A	.	.	.
NOS3	4846	broad.mit.edu	36	7	150329942	150329942	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000603	exon13	c.G1603A	p.A535T	.	.	.
GALNTL5	168391	broad.mit.edu	36	7	151342800	151342800	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145292	exon8	c.G1165A	p.D389N	.	.	.
GALNT11	63917	broad.mit.edu	36	7	151422390	151422390	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022087	exon2	c.G145A	p.G49R	.	.	.
MLL3	58508	broad.mit.edu	36	7	151509555	151509555	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170606	exon36	c.C6323A	p.S2108Y	.	.	.
MLL3	58508	broad.mit.edu	36	7	151522139	151522139	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170606	exon31	c.C4548T	p.G1516G	.	.	.
MLL3	58508	broad.mit.edu	36	7	151576486	151576486	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170606	exon14	c.G1966A	p.V656I	.	.	.
XRCC2	7516	broad.mit.edu	36	7	151977022	151977022	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005431	exon3	c.A481G	p.N161D	.	.	.
PAXIP1	22976	broad.mit.edu	36	7	154369188	154369188	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007349	exon19	c.C3100A	p.H1034N	.	.	.
PAXIP1	22976	broad.mit.edu	36	7	154376990	154376990	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007349	exon16	c.G2729A	p.R910H	.	.	.
RNF32	140545	broad.mit.edu	36	7	156140153	156140153	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184996	exon4	c.G397T	p.E133X	.	.	.
UBE3C	9690	broad.mit.edu	36	7	156667771	156667771	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014671	exon8	c.G979A	p.E327K	.	.	.
PTPRN2	5799	broad.mit.edu	36	7	157622110	157622110	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130843	exon8	c.G1171T	p.E391X	.	.	.
VIPR2	7434	broad.mit.edu	36	7	158544030	158544030	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003382	exon5	c.A358G	p.I120V	.	.	.
ANKMY2	57037	broad.mit.edu	36	7	16606989	16606989	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020319	exon10	c.G1248T	p.K416N	.	.	.
HDAC9	9734	broad.mit.edu	36	7	18841705	18841705	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178423	exon20	c.T2548G	p.F850V	.	.	.
TWISTNB	221830	broad.mit.edu	36	7	19704523	19704523	+	Missense_Mutation	SNP	C	T	T	rs61734275	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002926	exon4	c.G958A	p.E320K	.	.	.
MACC1	346389	broad.mit.edu	36	7	20166148	20166148	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182762	exon5	c.G361T	p.D121Y	.	.	.
ITGB8	3696	broad.mit.edu	36	7	20408240	20408240	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002214	exon10	c.T1653A	p.F551L	.	.	.
ABCB5	340273	broad.mit.edu	36	7	20649436	20649436	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163941	exon6	c.G419A	p.R140Q	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21565909	21565909	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003777	exon4	c.G856T	p.E286X	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21732021	21732021	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003777	exon45	c.C7356T	p.V2452V	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21771598	21771598	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003777	exon55	c.C8990T	p.S2997L	.	.	.
CDCA7L	55536	broad.mit.edu	36	7	21914578	21914578	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127371	exon3	c.G238T	p.D80Y	.	.	.
GPNMB	10457	broad.mit.edu	36	7	23263125	23263125	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005340	exon4	c.C457A	p.H153N	.	.	.
C7orf30	115416	broad.mit.edu	36	7	23307149	23307149	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138446	exon2	c.C423T	p.Y141Y	.	.	.
IGF2BP3	10643	broad.mit.edu	36	7	23318891	23318891	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006547	exon14	c.C1629A	p.F543L	.	.	.
IGF2BP3	10643	broad.mit.edu	36	7	23474678	23474678	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006547	exon2	c.G184T	p.E62X	.	.	.
STK31	56164	broad.mit.edu	36	7	23821292	23821292	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122833	exon23	c.C2696A	p.S899Y	.	.	.
CBX3	11335	broad.mit.edu	36	7	26218259	26218259	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007276	exon6	c.C458T	p.A153V	.	.	.
HOXA4	3201	broad.mit.edu	36	7	27135475	27135475	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002141	exon2	c.C857T	p.S286L	.	.	.
PLEKHA8	84725	broad.mit.edu	36	7	30058989	30058989	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197027	exon7	c.A778G	p.T260A	.	.	.
CRHR2	1395	broad.mit.edu	36	7	30668887	30668887	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001883	exon6	c.G645T	p.M215I	.	.	.
INMT	11185	broad.mit.edu	36	7	30759891	30759891	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006774	exon2	c.G174A	p.T58T	.	.	.
FAM188B	84182	broad.mit.edu	36	7	30784652	30784652	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032222	exon2	c.G143A	p.R48Q	.	.	.
C7orf16	10842	broad.mit.edu	36	7	31703131	31703131	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006658	exon4	c.G263T	p.R88I	.	.	.
FKBP9	11328	broad.mit.edu	36	7	33011438	33011438	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007270	exon10	c.G1663A	p.A555T	.	.	.
NT5C3	51251	broad.mit.edu	36	7	33021974	33021974	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016489	exon9	c.C625A	p.H209N	.	.	.
BBS9	27241	broad.mit.edu	36	7	33540122	33540122	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033605	exon20	c.C2315T	p.S772F	.	.	.
BMPER	168667	broad.mit.edu	36	7	34091905	34091905	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133468	exon13	c.C1421A	p.S474Y	.	.	.
BMPER	168667	broad.mit.edu	36	7	34149380	34149380	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133468	exon14	c.G1759T	p.D587Y	.	.	.
NPSR1	387129	broad.mit.edu	36	7	34854665	34854665	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207172	exon8	c.A890G	p.D297G	.	.	.
TBX20	57057	broad.mit.edu	36	7	35210659	35210659	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077653	exon7	c.C951T	p.Y317Y	.	.	.
KIAA0895	23366	broad.mit.edu	36	7	36363215	36363215	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100425	exon3	c.G688T	p.D230Y	.	.	.
AMPH	273	broad.mit.edu	36	7	38541089	38541089	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139316	exon2	c.C117T	p.F39F	.	.	.
CDK13	8621	broad.mit.edu	36	7	40052126	40052126	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003718	exon6	c.T2520G	p.C840W	.	.	.
CDK13	8621	broad.mit.edu	36	7	40100396	40100396	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003718	exon14	c.T3831C	p.Y1277Y	.	.	.
SDK1	221935	broad.mit.edu	36	7	4119583	4119583	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152744	exon24	c.C3571T	p.R1191W	.	.	.
GLI3	2737	broad.mit.edu	36	7	41971706	41971706	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000168	exon15	c.G3490A	p.E1164K	.	.	.
C7orf25	79020	broad.mit.edu	36	7	42916199	42916199	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024054	exon2	c.C826T	p.L276F	.	.	.
URGCP	55665	broad.mit.edu	36	7	43884664	43884664	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077664	exon6	c.C794T	p.S265L	.	.	.
MYL7	58498	broad.mit.edu	36	7	44145954	44145954	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021223	exon5	c.C329T	p.A110V	.	.	.
CAMK2B	816	broad.mit.edu	36	7	44260680	44260680	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172078	exon5	c.C327T	p.S109S	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48284578	48284578	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152701	exon15	c.T4606C	p.X1536Q	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48286236	48286236	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152701	exon15	c.G6264T	p.X2088Y	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48382410	48382410	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152701	exon31	c.G10740A	p.S3580S	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48590487	48590487	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152701	exon54	c.C14313T	p.Y4771Y	.	.	.
PAPOLB	56903	broad.mit.edu	36	7	4867242	4867242	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020144	exon1	c.A726C	p.L242F	.	.	.
EGFR	1956	broad.mit.edu	36	7	55191832	55191832	+	Silent	SNP	G	A	A	rs2302536	byCluster;byFrequency;byHapMap	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201282	exon9	c.G1119A	p.P373P	.	.	.
SEPT14	346288	broad.mit.edu	36	7	55881806	55881806	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207366	exon3	c.C73T	p.R25C	.	.	.
ZNF107	51427	broad.mit.edu	36	7	63804789	63804789	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013746	exon5	c.C672A	p.V224V	.	.	.
ZNF117	51351	broad.mit.edu	36	7	64076830	64076830	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015852	exon4	c.G554T	p.R185I	.	.	.
TPST1	8460	broad.mit.edu	36	7	65343049	65343049	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003596	exon2	c.G202T	p.D68Y	.	.	.
RABGEF1	27342	broad.mit.edu	36	7	65911476	65911476	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014504	exon9	c.C1246A	p.L416I	.	.	.
WBSCR17	64409	broad.mit.edu	36	7	70780132	70780132	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022479	exon9	c.C1405T	p.L469F	.	.	.
POM121	9883	broad.mit.edu	36	7	72054699	72054699	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172020	exon15	c.G2945A	p.R982H	.	.	.
STX1A	6804	broad.mit.edu	36	7	72755209	72755209	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004603	exon8	c.G580A	p.E194K	.	.	.
CCDC146	57639	broad.mit.edu	36	7	76746085	76746085	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020879	exon12	c.T1521G	p.I507M	.	.	.
PCLO	27445	broad.mit.edu	36	7	82423238	82423238	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033026	exon5	c.T4967G	p.L1656R	.	.	.
PCLO	27445	broad.mit.edu	36	7	82433252	82433252	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033026	exon4	c.A3788G	p.D1263G	.	.	.
SEMA3D	223117	broad.mit.edu	36	7	84589096	84589096	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152754	exon1	c.T48C	p.F16F	.	.	.
ABCB1	5243	broad.mit.edu	36	7	87067401	87067401	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000927	exon3	c.G36T	p.K12N	.	.	.
RUNDC3B	154661	broad.mit.edu	36	7	87245062	87245062	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134405	exon8	c.G811T	p.E271X	.	.	.
RUNDC3B	154661	broad.mit.edu	36	7	87274653	87274653	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134405	exon9	c.C986T	p.S329L	.	.	.
C7orf63	79846	broad.mit.edu	36	7	89732577	89732577	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160138	exon5	c.C383T	p.S128L	.	.	.
CYP51A1	1595	broad.mit.edu	36	7	91580928	91580928	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000786	exon10	c.G1517A	p.R506Q	.	.	.
CYP51A1	1595	broad.mit.edu	36	7	91591030	91591030	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000786	exon6	c.G844T	p.E282X	.	.	.
SAMD9L	219285	broad.mit.edu	36	7	92601868	92601868	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152703	exon5	c.G1353T	p.M451I	.	.	.
HEPACAM2	253012	broad.mit.edu	36	7	92682901	92682901	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198151	exon2	c.C428A	p.P143H	.	.	.
CALCR	799	broad.mit.edu	36	7	92893661	92893661	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001742	exon14	c.C1368T	p.G456G	.	.	.
COL1A2	1278	broad.mit.edu	36	7	93893686	93893686	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000089	exon46	c.C3013T	p.R1005C	.	.	.
COL1A2	1278	broad.mit.edu	36	7	93893775	93893775	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000089	exon46	c.C3102T	p.I1034I	.	.	.
PPP1R9A	55607	broad.mit.edu	36	7	94578552	94578552	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166163	exon2	c.G1441A	p.E481K	.	.	.
PPP1R9A	55607	broad.mit.edu	36	7	94753510	94753510	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166163	exon12	c.C2814T	p.S938S	.	.	.
LMTK2	22853	broad.mit.edu	36	7	97658024	97658024	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014916	exon10	c.G1047A	p.P349P	.	.	.
BAIAP2L1	55971	broad.mit.edu	36	7	97829662	97829662	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018842	exon2	c.A70G	p.N24D	.	.	.
NPTX2	4885	broad.mit.edu	36	7	98092320	98092320	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002523	exon3	c.G794A	p.G265D	.	.	.
TMEM130	222865	broad.mit.edu	36	7	98295746	98295746	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134451	exon2	c.C237T	p.F79F	.	.	.
ATP5J2	9551	broad.mit.edu	36	7	98893896	98893896	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003713	exon4	c.A257C	p.K86T	.	.	.
ZNF789	285989	broad.mit.edu	36	7	98922091	98922091	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213603	exon5	c.G322A	p.D108N	.	.	.
CYP3A5	1577	broad.mit.edu	36	7	99099583	99099583	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000777	exon8	c.T742G	p.F248V	.	.	.
CYP3A7	1551	broad.mit.edu	36	7	99146385	99146385	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000765	exon10	c.G932T	p.S311I	.	.	.
CYP3A4	1576	broad.mit.edu	36	7	99197764	99197764	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017460	exon11	c.G1089A	p.T363T	.	.	.
CYP3A43	64816	broad.mit.edu	36	7	99291193	99291193	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057096	exon8	c.C714T	p.I238I	.	.	.
ZNF3	7551	broad.mit.edu	36	7	99506796	99506796	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032924	exon6	c.G1247T	p.R416I	.	.	.
GPC2	221914	broad.mit.edu	36	7	99611288	99611288	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152742	exon3	c.C491T	p.A164V	.	.	.
GATS	352954	broad.mit.edu	36	7	99659604	99659604	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178831	exon3	c.C248T	p.A83V	.	.	.
ZCWPW1	55063	broad.mit.edu	36	7	99855201	99855201	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017984	exon4	c.G270T	p.E90D	.	.	.
ZCWPW1	55063	broad.mit.edu	36	7	99855421	99855421	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017984	exon4	c.G50T	p.R17I	.	.	.
SLC26A5	375611	broad.mit.edu	36	7	102802238	102802238	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167962	exon19	c.1983delT	p.F661fs	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100589306	100589306	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017890	exon28	c.C4290A	p.F1430L	.	.	.
COX6C	1345	broad.mit.edu	36	8	100968956	100968956	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004374	exon3	c.G181T	p.D61Y	.	.	.
NCALD	83988	broad.mit.edu	36	8	102774223	102774223	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040624	exon7	c.C456A	p.I152I	.	.	.
AZIN1	51582	broad.mit.edu	36	8	103914616	103914616	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015878	exon10	c.C748A	p.H250N	.	.	.
ATP6V1C1	528	broad.mit.edu	36	8	104137285	104137285	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001695	exon8	c.G586A	p.D196N	.	.	.
PRSS55	203074	broad.mit.edu	36	8	10427899	10427899	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197020	exon4	c.G672T	p.K224N	.	.	.
CTHRC1	115908	broad.mit.edu	36	8	104463976	104463976	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138455	exon4	c.G704A	p.R235H	.	.	.
DCAF13	25879	broad.mit.edu	36	8	104521638	104521638	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015420	exon9	c.G1505A	p.R502H	.	.	.
RIMS2	9699	broad.mit.edu	36	8	104967004	104967004	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100117	exon4	c.G1001A	p.R334Q	.	.	.
RIMS2	9699	broad.mit.edu	36	8	104997832	104997832	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100117	exon8	c.G1927T	p.E643X	.	.	.
RIMS2	9699	broad.mit.edu	36	8	105018039	105018039	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100117	exon13	c.C2460T	p.H820H	.	.	.
RP1L1	94137	broad.mit.edu	36	8	10518024	10518024	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178857	exon2	c.C98A	p.A33D	.	.	.
LRP12	29967	broad.mit.edu	36	8	105578385	105578385	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013437	exon5	c.T1571C	p.F524S	.	.	.
C8orf74	203076	broad.mit.edu	36	8	10595385	10595385	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040032	exon4	c.G879A	p.R293R	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110526842	110526842	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177531	exon38	c.C5568A	p.F1856L	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110530880	110530880	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177531	exon40	c.C6163A	p.P2055T	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113771381	113771381	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon14	c.C2047T	p.R683C	.	.	.
GATA4	2626	broad.mit.edu	36	8	11643918	11643918	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002052	exon3	c.C698T	p.T233M	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116701172	116701172	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014112	exon3	c.T328C	p.F110L	.	.	.
SLC30A8	169026	broad.mit.edu	36	8	118252506	118252506	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173851	exon7	c.C882T	p.V294V	.	.	.
EXT1	2131	broad.mit.edu	36	8	119192159	119192159	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000127	exon1	c.G308A	p.C103Y	.	.	.
DEPDC6	64798	broad.mit.edu	36	8	121009900	121009900	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022783	exon2	c.G202T	p.E68X	.	.	.
COL14A1	7373	broad.mit.edu	36	8	121336735	121336735	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021110	exon23	c.G2828A	p.R943H	.	.	.
COL14A1	7373	broad.mit.edu	36	8	121426798	121426798	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021110	exon45	c.A4892G	p.H1631R	.	.	.
MTBP	27085	broad.mit.edu	36	8	121538087	121538087	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022045	exon7	c.G743T	p.R248I	.	.	.
ZHX2	22882	broad.mit.edu	36	8	124034681	124034681	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014943	exon3	c.C1750T	p.R584X	.	.	.
TATDN1	83940	broad.mit.edu	36	8	125590049	125590049	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146160	exon5	c.C310T	p.R104X	.	.	.
NDUFB9	4715	broad.mit.edu	36	8	125628512	125628512	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005005	exon3	c.C385T	p.R129W	.	.	.
SQLE	6713	broad.mit.edu	36	8	126103206	126103206	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003129	exon11	c.G1563A	p.W521X	.	.	.
TRIB1	10221	broad.mit.edu	36	8	126514797	126514797	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025195	exon2	c.G417A	p.S139S	.	.	.
DLC1	10395	broad.mit.edu	36	8	13001481	13001481	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182643	exon9	c.C2736T	p.H912H	.	.	.
GSDMC	56169	broad.mit.edu	36	8	130858893	130858893	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031415	exon2	c.G123T	p.K41N	.	.	.
ADCY8	114	broad.mit.edu	36	8	131862087	131862087	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001115	exon18	c.G3487T	p.G1163X	.	.	.
EFR3A	23167	broad.mit.edu	36	8	133077843	133077843	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015137	exon19	c.C2074T	p.R692X	.	.	.
PHF20L1	51105	broad.mit.edu	36	8	133924057	133924057	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016018	exon19	c.G2503T	p.E835X	.	.	.
TG	7038	broad.mit.edu	36	8	133981739	133981739	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003235	exon15	c.C3406T	p.R1136W	.	.	.
DLC1	10395	broad.mit.edu	36	8	13401286	13401286	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182643	exon2	c.G666T	p.E222D	.	.	.
DLC1	10395	broad.mit.edu	36	8	13401449	13401449	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182643	exon2	c.G503A	p.G168D	.	.	.
TG	7038	broad.mit.edu	36	8	134015096	134015096	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003235	exon24	c.C4925T	p.S1642F	.	.	.
TG	7038	broad.mit.edu	36	8	134099209	134099209	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003235	exon38	c.C6567A	p.I2189I	.	.	.
WISP1	8840	broad.mit.edu	36	8	134302172	134302172	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003882	exon3	c.C516T	p.R172R	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139249432	139249432	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015912	exon12	c.G1146T	p.S382S	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139449377	139449377	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015912	exon2	c.C32T	p.S11L	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139670836	139670836	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152888	exon65	c.G4723T	p.D1575Y	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139843852	139843852	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152888	exon17	c.G1843A	p.D615N	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139902828	139902828	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152888	exon7	c.C978A	p.I326I	.	.	.
TRAPPC9	83696	broad.mit.edu	36	8	141379860	141379860	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160372	exon11	c.G1658A	p.R553Q	.	.	.
SGCZ	137868	broad.mit.edu	36	8	14225987	14225987	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139167	exon3	c.G332A	p.R111Q	.	.	.
GML	2765	broad.mit.edu	36	8	143919643	143919643	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002066	exon3	c.C181T	p.R61C	.	.	.
CYP11B2	1585	broad.mit.edu	36	8	143990402	143990402	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000498	exon9	c.A1508C	p.N503T	.	.	.
SGCZ	137868	broad.mit.edu	36	8	14456723	14456723	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139167	exon2	c.T123G	p.I41M	.	.	.
ZNF623	9831	broad.mit.edu	36	8	144803188	144803188	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014789	exon1	c.G3T	p.M1I	.	.	.
ZNF623	9831	broad.mit.edu	36	8	144804360	144804360	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014789	exon1	c.G1175A	p.R392Q	.	.	.
PLEC	5339	broad.mit.edu	36	8	145072976	145072976	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201383	exon30	c.C4020A	p.F1340L	.	.	.
ZNF251	90987	broad.mit.edu	36	8	145918524	145918524	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138367	exon5	c.C1330T	p.R444W	.	.	.
ZNF7	7553	broad.mit.edu	36	8	146038189	146038189	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003416	exon5	c.G893T	p.R298I	.	.	.
ZNF16	7564	broad.mit.edu	36	8	146127547	146127547	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006958	exon3	c.G1430A	p.R477Q	.	.	.
DLGAP2	9228	broad.mit.edu	36	8	1568562	1568562	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004745	exon5	c.G1513A	p.E505K	.	.	.
MSR1	4481	broad.mit.edu	36	8	16070629	16070629	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138716	exon4	c.C339A	p.V113V	.	.	.
EFHA2	286097	broad.mit.edu	36	8	17000340	17000340	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181723	exon9	c.A891G	p.V297V	.	.	.
MTUS1	57509	broad.mit.edu	36	8	17617617	17617617	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001925	exon4	c.C2361A	p.S787S	.	.	.
PCM1	5108	broad.mit.edu	36	8	17859390	17859390	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006197	exon13	c.G1866T	p.E622D	.	.	.
PCM1	5108	broad.mit.edu	36	8	17866360	17866360	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006197	exon18	c.G2658A	p.T886T	.	.	.
ZNF596	169270	broad.mit.edu	36	8	183748	183748	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042416	exon4	c.C166T	p.L56F	.	.	.
ZNF596	169270	broad.mit.edu	36	8	186126	186126	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042416	exon6	c.G1279T	p.A427S	.	.	.
ARHGEF10	9639	broad.mit.edu	36	8	1881103	1881103	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014629	exon27	c.C3272T	p.A1091V	.	.	.
SH2D4A	63898	broad.mit.edu	36	8	19221465	19221465	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022071	exon2	c.G127T	p.E43X	.	.	.
LPL	4023	broad.mit.edu	36	8	19863927	19863927	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000237	exon9	c.G1344T	p.E448D	.	.	.
SLC18A1	6570	broad.mit.edu	36	8	20049055	20049055	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003053	exon15	c.G1458T	p.E486D	.	.	.
SLC18A1	6570	broad.mit.edu	36	8	20052496	20052496	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003053	exon11	c.G1055A	p.G352D	.	.	.
MYOM2	9172	broad.mit.edu	36	8	2051300	2051300	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003970	exon26	c.G3322T	p.D1108Y	.	.	.
RHOBTB2	23221	broad.mit.edu	36	8	22918061	22918061	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160036	exon4	c.G235A	p.D79N	.	.	.
CHMP7	91782	broad.mit.edu	36	8	23171828	23171828	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152272	exon7	c.G881A	p.R294H	.	.	.
LOXL2	4017	broad.mit.edu	36	8	23241914	23241914	+	Missense_Mutation	SNP	G	A	A	rs4602894	byHapMap	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002318	exon6	c.C1076T	p.S359L	.	.	.
ADAMDEC1	27299	broad.mit.edu	36	8	24309221	24309221	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145272	exon4	c.C170A	p.S57Y	.	.	.
NEFM	4741	broad.mit.edu	36	8	24830721	24830721	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105541	exon3	c.C320T	p.S107F	.	.	.
NEFL	4747	broad.mit.edu	36	8	24867670	24867670	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006158	exon2	c.G1111T	p.E371X	.	.	.
NEFL	4747	broad.mit.edu	36	8	24869265	24869265	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006158	exon1	c.G682A	p.E228K	.	.	.
DOCK5	80005	broad.mit.edu	36	8	25276533	25276533	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024940	exon29	c.C3003A	p.V1001V	.	.	.
CDCA2	157313	broad.mit.edu	36	8	25393507	25393507	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152562	exon8	c.C982T	p.R328C	.	.	.
CHRNA2	1135	broad.mit.edu	36	8	27377247	27377247	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000742	exon6	c.G630T	p.K210N	.	.	.
SCARA3	51435	broad.mit.edu	36	8	27572666	27572666	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182826	exon5	c.G1060A	p.E354K	.	.	.
C8orf80	389643	broad.mit.edu	36	8	27936837	27936837	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010906	exon19	c.G2307T	p.E769D	.	.	.
C8orf80	389643	broad.mit.edu	36	8	27944696	27944696	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010906	exon15	c.A1891C	p.N631H	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2823623	2823623	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon55	c.G8485T	p.E2829X	.	.	.
FZD3	7976	broad.mit.edu	36	8	28441295	28441295	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145866	exon4	c.G1099A	p.D367N	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2963360	2963360	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon42	c.G6399T	p.Q2133H	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3059505	3059505	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon30	c.T4789C	p.S1597P	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3059569	3059569	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon30	c.G4725T	p.K1575N	.	.	.
TEX15	56154	broad.mit.edu	36	8	30821588	30821588	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031271	exon1	c.C4488A	p.I1496I	.	.	.
TEX15	56154	broad.mit.edu	36	8	30823035	30823035	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031271	exon1	c.C3041A	p.S1014Y	.	.	.
NRG1	3084	broad.mit.edu	36	8	31617676	31617676	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013962	exon1	c.G634A	p.D212N	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3244383	3244383	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon16	c.C2343A	p.F781L	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3253147	3253147	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon14	c.T1753C	p.F585L	.	.	.
DUSP26	78986	broad.mit.edu	36	8	33569163	33569163	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024025	exon4	c.C546A	p.V182V	.	.	.
UNC5D	137970	broad.mit.edu	36	8	35526431	35526431	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080872	exon2	c.T183C	p.D61D	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3553361	3553361	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon7	c.G992A	p.S331N	.	.	.
KCNU1	157855	broad.mit.edu	36	8	36781946	36781946	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031836	exon4	c.C453A	p.F151L	.	.	.
KCNU1	157855	broad.mit.edu	36	8	36899275	36899275	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031836	exon24	c.C2706T	p.S902S	.	.	.
ASH2L	9070	broad.mit.edu	36	8	38105049	38105049	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105214	exon11	c.C967T	p.R323W	.	.	.
LSM1	27257	broad.mit.edu	36	8	38140383	38140383	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014462	exon4	c.C364A	p.L122I	.	.	.
BAG4	9530	broad.mit.edu	36	8	38186794	38186794	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004874	exon5	c.C1000A	p.L334I	.	.	.
MYST3	7994	broad.mit.edu	36	8	41914082	41914082	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099413	exon17	c.C3201T	p.I1067I	.	.	.
MYST3	7994	broad.mit.edu	36	8	42025417	42025417	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099413	exon3	c.G236A	p.R79Q	.	.	.
CHRNA6	8973	broad.mit.edu	36	8	42730716	42730716	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004198	exon5	c.C783A	p.V261V	.	.	.
FNTA	2339	broad.mit.edu	36	8	43038449	43038449	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002027	exon3	c.G335T	p.R112I	.	.	.
HGSNAT	138050	broad.mit.edu	36	8	43121310	43121310	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152419	exon2	c.G181T	p.E61X	.	.	.
HGSNAT	138050	broad.mit.edu	36	8	43152413	43152413	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152419	exon10	c.G891T	p.M297I	.	.	.
HGSNAT	138050	broad.mit.edu	36	8	43172169	43172169	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152419	exon17	c.C1643A	p.S548Y	.	.	.
KIAA0146	23514	broad.mit.edu	36	8	48369075	48369075	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080394	exon5	c.T428C	p.F143S	.	.	.
PRKDC	5591	broad.mit.edu	36	8	48972290	48972290	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081640	exon30	c.C3582T	p.F1194F	.	.	.
ATP6V1H	51606	broad.mit.edu	36	8	54847139	54847139	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015941	exon10	c.C1012A	p.L338I	.	.	.
RP1	6101	broad.mit.edu	36	8	55696223	55696223	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006269	exon2	c.C144T	p.F48F	.	.	.
RP1	6101	broad.mit.edu	36	8	55704808	55704808	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006269	exon4	c.G5813A	p.R1938H	.	.	.
PLAG1	5324	broad.mit.edu	36	8	57241593	57241593	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114635	exon3	c.T1020G	p.F340L	.	.	.
PLAG1	5324	broad.mit.edu	36	8	57242194	57242194	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114635	exon3	c.T419G	p.F140C	.	.	.
SDR16C5	195814	broad.mit.edu	36	8	57391456	57391456	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138969	exon2	c.C5A	p.S2Y	.	.	.
FAM110B	90362	broad.mit.edu	36	8	59221946	59221946	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147189	exon5	c.G603A	p.S201S	.	.	.
TOX	9760	broad.mit.edu	36	8	59890782	59890782	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014729	exon7	c.C1061T	p.S354L	.	.	.
TOX	9760	broad.mit.edu	36	8	59926915	59926915	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014729	exon4	c.C415T	p.P139S	.	.	.
ERICH1	157697	broad.mit.edu	36	8	613851	613851	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207332	exon4	c.G501T	p.K167N	.	.	.
CHD7	55636	broad.mit.edu	36	8	61905447	61905447	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017780	exon15	c.C3535A	p.Q1179K	.	.	.
MCPH1	79648	broad.mit.edu	36	8	6289724	6289724	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024596	exon8	c.G1073T	p.R358I	.	.	.
YTHDF3	253943	broad.mit.edu	36	8	64262584	64262584	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152758	exon4	c.G1460A	p.R487H	.	.	.
AGPAT5	55326	broad.mit.edu	36	8	6553801	6553801	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018361	exon1	c.T204G	p.N68K	.	.	.
ADHFE1	137872	broad.mit.edu	36	8	67535170	67535170	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144650	exon13	c.C1236T	p.F412F	.	.	.
C8orf45	157777	broad.mit.edu	36	8	67953643	67953643	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173518	exon7	c.G644A	p.R215H	.	.	.
CSPP1	79848	broad.mit.edu	36	8	68186772	68186772	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024790	exon9	c.C1132T	p.R378X	.	.	.
CSPP1	79848	broad.mit.edu	36	8	68228896	68228896	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024790	exon17	c.G2197T	p.E733X	.	.	.
ARFGEF1	10565	broad.mit.edu	36	8	68340811	68340811	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006421	exon14	c.G2107T	p.E703X	.	.	.
SLCO5A1	81796	broad.mit.edu	36	8	70907197	70907197	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030958	exon2	c.C266T	p.S89L	.	.	.
NCOA2	10499	broad.mit.edu	36	8	71201766	71201766	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006540	exon19	c.A3752G	p.Q1251R	.	.	.
TRPA1	8989	broad.mit.edu	36	8	73111122	73111122	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007332	exon21	c.T2510G	p.I837S	.	.	.
TRPA1	8989	broad.mit.edu	36	8	73146606	73146606	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007332	exon2	c.G162T	p.K54N	.	.	.
JPH1	56704	broad.mit.edu	36	8	75389704	75389704	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020647	exon2	c.C1086T	p.G362G	.	.	.
PI15	51050	broad.mit.edu	36	8	75900191	75900191	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015886	exon2	c.C152T	p.A51V	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77779589	77779589	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024721	exon2	c.G711T	p.E237D	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77779866	77779866	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024721	exon2	c.G988T	p.E330X	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77853196	77853196	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024721	exon4	c.C3291T	p.I1097I	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77927593	77927593	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024721	exon10	c.T5881C	p.L1961L	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77929172	77929172	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024721	exon10	c.C7460T	p.P2487L	.	.	.
PEX2	5828	broad.mit.edu	36	8	78058079	78058079	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000318	exon4	c.C891T	p.I297I	.	.	.
FAM164A	51101	broad.mit.edu	36	8	79764074	79764074	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016010	exon5	c.A415C	p.N139H	.	.	.
SNX16	64089	broad.mit.edu	36	8	82890140	82890140	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152837	exon4	c.C569A	p.P190Q	.	.	.
ATP6V0D2	245972	broad.mit.edu	36	8	87180435	87180435	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152565	exon1	c.C112T	p.Q38X	.	.	.
FAM82B	51115	broad.mit.edu	36	8	87569979	87569979	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016033	exon3	c.G253T	p.E85X	.	.	.
CNGB3	54714	broad.mit.edu	36	8	87710288	87710288	+	Nonsense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019098	exon12	c.T1455G	p.Y485X	.	.	.
CNGB3	54714	broad.mit.edu	36	8	87748335	87748335	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019098	exon6	c.C786T	p.I262I	.	.	.
DCAF4L2	138009	broad.mit.edu	36	8	88955098	88955098	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152418	exon1	c.G218A	p.R73Q	.	.	.
TMEM55A	55529	broad.mit.edu	36	8	92078122	92078122	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018710	exon6	c.G566A	p.R189Q	.	.	.
PDP1	54704	broad.mit.edu	36	8	95003940	95003940	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001161779	exon3	c.C552A	p.L184L	.	.	.
GEM	2669	broad.mit.edu	36	8	95341847	95341847	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181702	exon2	c.C61T	p.R21C	.	.	.
RAD54B	25788	broad.mit.edu	36	8	95468407	95468407	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012415	exon11	c.G1966A	p.E656K	.	.	.
TP53INP1	94241	broad.mit.edu	36	8	96011978	96011978	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033285	exon4	c.C628T	p.R210C	.	.	.
PLEKHF2	79666	broad.mit.edu	36	8	96235617	96235617	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024613	exon2	c.T169G	p.L57V	.	.	.
MIR124-2	406908	broad.mit.edu	36	8	65454328	65454328	+	RNA	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
LHX3	8022	broad.mit.edu	36	9	138229353	138229354	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178138	exon6	c.833_834insG	p.E278fs	.	.	.
NR4A3	8013	broad.mit.edu	36	9	101665888	101665888	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006981	exon8	c.G1799A	p.R600H	.	.	.
TEX10	54881	broad.mit.edu	36	9	102149359	102149359	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017746	exon3	c.G331T	p.D111Y	.	.	.
GRIN3A	116443	broad.mit.edu	36	9	103472730	103472730	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133445	exon3	c.C1785T	p.F595F	.	.	.
CYLC2	1539	broad.mit.edu	36	9	104797497	104797497	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001340	exon1	c.G14T	p.R5I	.	.	.
CYLC2	1539	broad.mit.edu	36	9	104807693	104807693	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001340	exon5	c.A959C	p.K320T	.	.	.
OR13C3	138803	broad.mit.edu	36	9	106338777	106338777	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001961	exon1	c.C139A	p.L47I	.	.	.
OR13C3	138803	broad.mit.edu	36	9	106338883	106338883	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001961	exon1	c.C33A	p.F11L	.	.	.
OR13C9	286362	broad.mit.edu	36	9	106419626	106419626	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001956	exon1	c.G681T	p.K227N	.	.	.
OR13D1	286365	broad.mit.edu	36	9	106497372	106497372	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004484	exon1	c.C849A	p.F283L	.	.	.
ABCA1	19	broad.mit.edu	36	9	106685191	106685191	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005502	exon5	c.A371G	p.D124G	.	.	.
EPB41L4B	54566	broad.mit.edu	36	9	111005811	111005811	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019114	exon19	c.G1899A	p.P633P	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112206635	112206635	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153366	exon39	c.G9459A	p.T3153T	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112232420	112232420	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153366	exon33	c.T5485C	p.C1829R	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112234042	112234042	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153366	exon32	c.A5327G	p.Y1776C	.	.	.
KIAA0368	23392	broad.mit.edu	36	9	113194916	113194916	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080398	exon29	c.A3579C	p.Q1193H	.	.	.
KIAA0368	23392	broad.mit.edu	36	9	113224061	113224061	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080398	exon16	c.A1950G	p.R650R	.	.	.
KIAA0368	23392	broad.mit.edu	36	9	113286818	113286818	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080398	exon1	c.A29G	p.K10R	.	.	.
ZNF483	158399	broad.mit.edu	36	9	113344832	113344832	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133464	exon6	c.G1796T	p.R599I	.	.	.
UGCG	7357	broad.mit.edu	36	9	113734370	113734370	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003358	exon8	c.C924T	p.H308H	.	.	.
SUSD1	64420	broad.mit.edu	36	9	113913786	113913786	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022486	exon8	c.G1140A	p.S380S	.	.	.
ROD1	9991	broad.mit.edu	36	9	114026239	114026239	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163790	exon14	c.C1530A	p.F510L	.	.	.
TNC	3371	broad.mit.edu	36	9	116888210	116888210	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002160	exon3	c.C1621T	p.R541C	.	.	.
CDK5RAP2	55755	broad.mit.edu	36	9	122245761	122245761	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018249	exon23	c.G3106A	p.D1036N	.	.	.
PHF19	26147	broad.mit.edu	36	9	122671817	122671817	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009936	exon5	c.G592A	p.A198T	.	.	.
TTLL11	158135	broad.mit.edu	36	9	123833901	123833901	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001139442	exon3	c.G885A	p.Q295Q	.	.	.
OR1J4	26219	broad.mit.edu	36	9	124321955	124321955	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004452	exon1	c.T715C	p.S239P	.	.	.
OR1N1	138883	broad.mit.edu	36	9	124328980	124328980	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012363	exon1	c.C414A	p.V138V	.	.	.
OR1N2	138882	broad.mit.edu	36	9	124356095	124356095	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004457	exon1	c.T826C	p.Y276H	.	.	.
OR1L6	392390	broad.mit.edu	36	9	124552144	124552144	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004453	exon1	c.A197G	p.N66S	.	.	.
OR1K1	392392	broad.mit.edu	36	9	124602339	124602339	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080859	exon1	c.C117T	p.S39S	.	.	.
GPR21	2844	broad.mit.edu	36	9	124837313	124837313	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005294	exon1	c.G647A	p.R216H	.	.	.
STRBP	55342	broad.mit.edu	36	9	124981162	124981162	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171137	exon4	c.A127C	p.K43Q	.	.	.
OLFML2A	169611	broad.mit.edu	36	9	126603642	126603642	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182487	exon5	c.C798T	p.S266S	.	.	.
WDR38	401551	broad.mit.edu	36	9	126657806	126657806	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001045476	exon3	c.G263A	p.R88H	.	.	.
RABEPK	10244	broad.mit.edu	36	9	127022745	127022745	+	Silent	SNP	C	T	T	rs1045383	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005833	exon5	c.C471T	p.G157G	.	.	.
FAM125B	89853	broad.mit.edu	36	9	128188680	128188680	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011703	exon4	c.T331C	p.L111L	.	.	.
LRSAM1	90678	broad.mit.edu	36	9	129303135	129303135	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005373	exon25	c.C1938T	p.V646V	.	.	.
NAIF1	203245	broad.mit.edu	36	9	129868727	129868727	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_197956	exon1	c.G475A	p.A159T	.	.	.
DNM1	1759	broad.mit.edu	36	9	130022343	130022343	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005336	exon6	c.G751A	p.A251T	.	.	.
C9orf119	375757	broad.mit.edu	36	9	130078274	130078274	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040011	exon1	c.G29T	p.W10L	.	.	.
TRUB2	26995	broad.mit.edu	36	9	130111940	130111940	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015679	exon8	c.C706T	p.R236W	.	.	.
FNBP1	23048	broad.mit.edu	36	9	131727170	131727170	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015033	exon9	c.C877T	p.R293C	.	.	.
FNBP1	23048	broad.mit.edu	36	9	131780675	131780675	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015033	exon4	c.G235A	p.E79K	.	.	.
FAM78A	286336	broad.mit.edu	36	9	133141379	133141379	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033387	exon1	c.T9C	p.G3G	.	.	.
POMT1	10585	broad.mit.edu	36	9	133384640	133384640	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007171	exon16	c.G1596A	p.A532A	.	.	.
MED27	9442	broad.mit.edu	36	9	133759171	133759171	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004269	exon5	c.C603T	p.I201I	.	.	.
SETX	23064	broad.mit.edu	36	9	134142343	134142343	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015046	exon22	c.G6860A	p.R2287Q	.	.	.
TTF1	7270	broad.mit.edu	36	9	134241186	134241186	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007344	exon11	c.G2655A	p.A885A	.	.	.
C9orf98	158067	broad.mit.edu	36	9	134692230	134692230	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152572	exon8	c.G589A	p.E197K	.	.	.
SURF6	6838	broad.mit.edu	36	9	135190415	135190415	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006753	exon3	c.G353A	p.R118Q	.	.	.
SURF4	6836	broad.mit.edu	36	9	135224025	135224025	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033161	exon2	c.G166A	p.D56N	.	.	.
RXRA	6256	broad.mit.edu	36	9	136468220	136468220	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002957	exon10	c.G1328A	p.G443E	.	.	.
FCN2	2220	broad.mit.edu	36	9	136916912	136916912	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004108	exon5	c.G308A	p.R103H	.	.	.
PMPCA	23203	broad.mit.edu	36	9	138426791	138426791	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015160	exon3	c.A303C	p.E101D	.	.	.
SEC16A	9919	broad.mit.edu	36	9	138470018	138470018	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014866	exon20	c.C5713T	p.P1905S	.	.	.
UAP1L1	91373	broad.mit.edu	36	9	139094342	139094342	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207309	exon6	c.A1105G	p.N369D	.	.	.
FREM1	158326	broad.mit.edu	36	9	14730164	14730164	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144966	exon37	c.G6323A	p.R2108K	.	.	.
FREM1	158326	broad.mit.edu	36	9	14737388	14737388	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144966	exon34	c.T5883G	p.S1961R	.	.	.
FREM1	158326	broad.mit.edu	36	9	14774562	14774562	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144966	exon25	c.G4248A	p.T1416T	.	.	.
BNC2	54796	broad.mit.edu	36	9	16426658	16426658	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017637	exon6	c.C1534T	p.R512W	.	.	.
ADAMTSL1	92949	broad.mit.edu	36	9	18464288	18464288	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052866	exon1	c.C58T	p.L20F	.	.	.
ADAMTSL1	92949	broad.mit.edu	36	9	18743454	18743454	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040272	exon16	c.C2165T	p.A722V	.	.	.
HAUS6	54801	broad.mit.edu	36	9	19048123	19048123	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017645	exon16	c.T2642C	p.F881S	.	.	.
SLC24A2	25769	broad.mit.edu	36	9	19776611	19776611	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020344	exon2	c.G254T	p.R85I	.	.	.
KLHL9	55958	broad.mit.edu	36	9	21323610	21323610	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018847	exon1	c.G1249T	p.E417X	.	.	.
IFNA6	3443	broad.mit.edu	36	9	21340876	21340876	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021002	exon1	c.C11A	p.P4H	.	.	.
IFNA8	3445	broad.mit.edu	36	9	21399499	21399499	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002170	exon1	c.C324A	p.F108L	.	.	.
ELAVL2	1993	broad.mit.edu	36	9	23721022	23721022	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171197	exon3	c.A331C	p.K111Q	.	.	.
TOPORS	10210	broad.mit.edu	36	9	32534014	32534014	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195622	exon2	c.C314A	p.S105Y	.	.	.
NFX1	4799	broad.mit.edu	36	9	33284462	33284462	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147134	exon2	c.G70T	p.E24X	.	.	.
NOL6	65083	broad.mit.edu	36	9	33454941	33454941	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022917	exon21	c.C2715A	p.F905L	.	.	.
NOL6	65083	broad.mit.edu	36	9	33457240	33457240	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022917	exon14	c.C1746A	p.F582L	.	.	.
PRSS3	5646	broad.mit.edu	36	9	33785594	33785594	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002771	exon1	c.C23T	p.A8V	.	.	.
UBE2R2	54926	broad.mit.edu	36	9	33890191	33890191	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017811	exon3	c.C284T	p.S95L	.	.	.
CCL27	10850	broad.mit.edu	36	9	34651979	34651979	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006664	exon3	c.C301A	p.P101T	.	.	.
HINT2	84681	broad.mit.edu	36	9	35803656	35803656	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032593	exon2	c.C207A	p.L69L	.	.	.
DOCK8	81704	broad.mit.edu	36	9	404884	404884	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190458	exon27	c.C3333T	p.I1111I	.	.	.
ZNF658	26149	broad.mit.edu	36	9	40764525	40764525	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033160	exon5	c.A750C	p.K250N	.	.	.
KIAA2026	158358	broad.mit.edu	36	9	5958511	5958511	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017969	exon3	c.C1720T	p.R574C	.	.	.
TRPM3	80036	broad.mit.edu	36	9	72420805	72420805	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007471	exon17	c.C2329A	p.L777M	.	.	.
TMC1	117531	broad.mit.edu	36	9	74505316	74505316	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138691	exon8	c.G299T	p.R100I	.	.	.
ALDH1A1	216	broad.mit.edu	36	9	74706014	74706014	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000689	exon13	c.G1436T	p.G479V	.	.	.
RORB	6096	broad.mit.edu	36	9	76439446	76439446	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006914	exon3	c.A173G	p.N58S	.	.	.
TRPM6	140803	broad.mit.edu	36	9	76580743	76580743	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177310	exon24	c.G3264T	p.M1088I	.	.	.
TRPM6	140803	broad.mit.edu	36	9	76692569	76692569	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017662	exon1	c.G24A	p.E8E	.	.	.
C9orf41	138199	broad.mit.edu	36	9	76803375	76803375	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152420	exon5	c.C869A	p.S290Y	.	.	.
PRUNE2	158471	broad.mit.edu	36	9	78658931	78658931	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015225	exon2	c.G50A	p.R17H	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79186744	79186744	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018037	exon67	c.G8993A	p.R2998Q	.	.	.
TLE4	7091	broad.mit.edu	36	9	81525012	81525012	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007005	exon16	c.A1822T	p.N608Y	.	.	.
FAM75D1	389763	broad.mit.edu	36	9	83798500	83798500	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001670	exon4	c.G3295A	p.E1099K	.	.	.
PTPRD	5789	broad.mit.edu	36	9	8482898	8482898	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002839	exon27	c.C2431T	p.R811C	.	.	.
PTPRD	5789	broad.mit.edu	36	9	8626706	8626706	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040712	exon2	c.G203T	p.R68I	.	.	.
NTRK2	4915	broad.mit.edu	36	9	86549745	86549745	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018066	exon11	c.G1233A	p.T411T	.	.	.
AGTPBP1	23287	broad.mit.edu	36	9	87394372	87394372	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015239	exon20	c.C2493A	p.I831I	.	.	.
NAA35	60560	broad.mit.edu	36	9	87763298	87763298	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024635	exon4	c.C250A	p.L84I	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89444126	89444126	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004938	exon5	c.A461C	p.K154T	.	.	.
DIRAS2	54769	broad.mit.edu	36	9	92415398	92415398	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017594	exon2	c.A532G	p.I178V	.	.	.
AUH	549	broad.mit.edu	36	9	93023072	93023072	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001698	exon7	c.G679A	p.A227T	.	.	.
IARS	3376	broad.mit.edu	36	9	94082905	94082905	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013417	exon7	c.T689G	p.L230R	.	.	.
OMD	4958	broad.mit.edu	36	9	94218812	94218812	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005014	exon2	c.G850T	p.E284X	.	.	.
OMD	4958	broad.mit.edu	36	9	94218980	94218980	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005014	exon2	c.C682T	p.P228S	.	.	.
FAM120A	23196	broad.mit.edu	36	9	95299625	95299625	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014612	exon4	c.G856A	p.V286I	.	.	.
PHF2	5253	broad.mit.edu	36	9	95469276	95469276	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005392	exon17	c.G2281A	p.A761T	.	.	.
PTPDC1	138639	broad.mit.edu	36	9	95887359	95887359	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152422	exon2	c.T244C	p.L82L	.	.	.
FAM22F	54754	broad.mit.edu	36	9	96120761	96120761	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017561	exon7	c.C2078A	p.A693D	.	.	.
FBP2	8789	broad.mit.edu	36	9	96395816	96395816	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003837	exon1	c.G14A	p.S5N	.	.	.
PTCH1	5727	broad.mit.edu	36	9	97269283	97269283	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083605	exon15	c.C2043A	p.V681V	.	.	.
C9orf102	375748	broad.mit.edu	36	9	97724432	97724432	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010895	exon8	c.A1357C	p.K453Q	.	.	.
DMRT3	58524	broad.mit.edu	36	9	980942	980942	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021240	exon2	c.C1356T	p.T452T	.	.	.
CDC14B	8555	broad.mit.edu	36	9	98325454	98325454	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077181	exon11	c.A1044G	p.Q348Q	.	.	.
ZNF510	22869	broad.mit.edu	36	9	98561074	98561074	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014930	exon6	c.G1859T	p.R620I	.	.	.
LOC57653	57653	broad.mit.edu	36	9	99156716	99156716	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020893	exon23	c.C3179A	p.S1060X	.	.	.
CORO2A	7464	broad.mit.edu	36	9	99928682	99928682	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003389	exon11	c.C1416T	p.F472F	.	.	.
TMEM35	59353	broad.mit.edu	36	X	100236537	100236537	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021637	exon2	c.G440A	p.G147E	.	.	.
BTK	695	broad.mit.edu	36	X	100497787	100497787	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000061	exon15	c.G1475A	p.R492H	.	.	.
GPRASP1	9737	broad.mit.edu	36	X	101798579	101798579	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099411	exon3	c.T3082C	p.S1028P	.	.	.
GPRASP2	114928	broad.mit.edu	36	X	101858251	101858251	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004051	exon5	c.G1798T	p.E600X	.	.	.
TMEM31	203562	broad.mit.edu	36	X	102855197	102855197	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182541	exon3	c.G122A	p.R41Q	.	.	.
NRK	203447	broad.mit.edu	36	X	105065020	105065020	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198465	exon20	c.T3427G	p.F1143V	.	.	.
TBC1D8B	54885	broad.mit.edu	36	X	105956081	105956081	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198881	exon6	c.C993T	p.S331S	.	.	.
VSIG1	340547	broad.mit.edu	36	X	107187946	107187946	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182607	exon2	c.G72T	p.V24V	.	.	.
COL4A5	1287	broad.mit.edu	36	X	107716573	107716573	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000495	exon19	c.G1105T	p.E369X	.	.	.
IRS4	8471	broad.mit.edu	36	X	107863055	107863055	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003604	exon1	c.C3176A	p.S1059Y	.	.	.
IRS4	8471	broad.mit.edu	36	X	107863445	107863445	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003604	exon1	c.G2786T	p.R929I	.	.	.
GUCY2F	2986	broad.mit.edu	36	X	108522874	108522874	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001522	exon13	c.T2491A	p.Y831N	.	.	.
GUCY2F	2986	broad.mit.edu	36	X	108583693	108583693	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001522	exon4	c.G1084A	p.A362T	.	.	.
ACSL4	2182	broad.mit.edu	36	X	108789257	108789257	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004458	exon15	c.C1837T	p.R613X	.	.	.
TMEM164	84187	broad.mit.edu	36	X	109197272	109197272	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032227	exon3	c.C432T	p.V144V	.	.	.
AMMECR1	9949	broad.mit.edu	36	X	109332396	109332396	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171689	exon6	c.G355T	p.E119X	.	.	.
PAK3	5063	broad.mit.edu	36	X	110292874	110292874	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128166	exon7	c.G544T	p.E182X	.	.	.
DCX	1641	broad.mit.edu	36	X	110431573	110431573	+	Nonstop_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178153	exon7	c.T1081C	p.X361Q	.	.	.
ALG13	79868	broad.mit.edu	36	X	110817880	110817880	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018466	exon4	c.A493C	p.K165Q	.	.	.
TRPC5	7224	broad.mit.edu	36	X	110977229	110977229	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012471	exon6	c.C1469T	p.S490L	.	.	.
HTR2C	3358	broad.mit.edu	36	X	113988972	113988972	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000868	exon5	c.C500T	p.S167L	.	.	.
KLHL13	90293	broad.mit.edu	36	X	116927816	116927816	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168300	exon5	c.A824G	p.N275S	.	.	.
WDR44	54521	broad.mit.edu	36	X	117428934	117428934	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184966	exon11	c.C1646T	p.S549L	.	.	.
DOCK11	139818	broad.mit.edu	36	X	117628403	117628403	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144658	exon28	c.C3090T	p.F1030F	.	.	.
ATP1B4	23439	broad.mit.edu	36	X	119397509	119397509	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142447	exon8	c.G1066T	p.E356X	.	.	.
CUL4B	8450	broad.mit.edu	36	X	119550310	119550310	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079872	exon18	c.G2434T	p.E812X	.	.	.
GRIA3	2892	broad.mit.edu	36	X	122214878	122214878	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007325	exon3	c.C312A	p.F104L	.	.	.
DCAF12L2	340578	broad.mit.edu	36	X	125127089	125127089	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013628	exon1	c.G500A	p.G167D	.	.	.
ACTRT1	139741	broad.mit.edu	36	X	127012749	127012749	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138289	exon1	c.G1118T	p.R373I	.	.	.
SMARCA1	6594	broad.mit.edu	36	X	128451766	128451766	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003069	exon15	c.G1900T	p.E634X	.	.	.
SMARCA1	6594	broad.mit.edu	36	X	128478031	128478031	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003069	exon3	c.G386A	p.R129Q	.	.	.
IGSF1	3547	broad.mit.edu	36	X	130237198	130237198	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170962	exon15	c.A3092G	p.Y1031C	.	.	.
SAGE1	55511	broad.mit.edu	36	X	134820377	134820377	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018666	exon16	c.C2002A	p.L668M	.	.	.
GPR112	139378	broad.mit.edu	36	X	135257448	135257448	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153834	exon6	c.A3917C	p.K1306T	.	.	.
GPR112	139378	broad.mit.edu	36	X	135297675	135297675	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153834	exon16	c.C7887A	p.F2629L	.	.	.
GPR112	139378	broad.mit.edu	36	X	135324037	135324037	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153834	exon25	c.G9090T	p.K3030N	.	.	.
CD40LG	959	broad.mit.edu	36	X	135558121	135558121	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000074	exon1	c.A48G	p.G16G	.	.	.
CD40LG	959	broad.mit.edu	36	X	135568868	135568868	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000074	exon5	c.A414G	p.L138L	.	.	.
ARHGEF6	9459	broad.mit.edu	36	X	135623165	135623165	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004840	exon7	c.G763T	p.E255X	.	.	.
GPR101	83550	broad.mit.edu	36	X	135940141	135940141	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_054021	exon1	c.C1359A	p.V453V	.	.	.
F9	2158	broad.mit.edu	36	X	138471695	138471695	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000133	exon8	c.C1185A	p.F395L	.	.	.
MCF2	4168	broad.mit.edu	36	X	138526113	138526113	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099855	exon12	c.G1365T	p.E455D	.	.	.
ATP11C	286410	broad.mit.edu	36	X	138708102	138708102	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010986	exon10	c.G862T	p.E288X	.	.	.
MAGEC1	9947	broad.mit.edu	36	X	140822311	140822311	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005462	exon4	c.C1455A	p.S485S	.	.	.
MAGEC1	9947	broad.mit.edu	36	X	140822903	140822903	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005462	exon4	c.C2047T	p.P683S	.	.	.
SPANXN2	494119	broad.mit.edu	36	X	142622858	142622858	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009615	exon2	c.G486T	p.Q162H	.	.	.
UBE2NL	389898	broad.mit.edu	36	X	142795125	142795125	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012989	exon1	c.G257T	p.R86I	.	.	.
SLITRK2	84631	broad.mit.edu	36	X	144712639	144712639	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144006	exon3	c.C1004A	p.P335H	.	.	.
FMR1NB	158521	broad.mit.edu	36	X	146895989	146895989	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152578	exon3	c.G473T	p.R158I	.	.	.
AFF2	2334	broad.mit.edu	36	X	147869969	147869969	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002025	exon19	c.C3588T	p.V1196V	.	.	.
MTMR1	8776	broad.mit.edu	36	X	149674939	149674939	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003828	exon14	c.C1777A	p.H593N	.	.	.
GABRE	2564	broad.mit.edu	36	X	150880459	150880459	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004961	exon5	c.C598T	p.L200F	.	.	.
PNMA5	114824	broad.mit.edu	36	X	151909681	151909681	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001103150	exon2	c.C1118A	p.S373Y	.	.	.
DKC1	1736	broad.mit.edu	36	X	153649893	153649893	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001363	exon8	c.A763G	p.S255G	.	.	.
DKC1	1736	broad.mit.edu	36	X	153657710	153657710	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001363	exon14	c.T1393C	p.L465L	.	.	.
F8	2157	broad.mit.edu	36	X	153812469	153812469	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000132	exon14	c.T2790G	p.V930V	.	.	.
F8	2157	broad.mit.edu	36	X	153813076	153813076	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000132	exon14	c.C2183A	p.S728Y	.	.	.
F8	2157	broad.mit.edu	36	X	153866256	153866256	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000132	exon6	c.A687G	p.S229S	.	.	.
ACE2	59272	broad.mit.edu	36	X	15509325	15509325	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021804	exon9	c.G1010A	p.G337E	.	.	.
TXLNG	55787	broad.mit.edu	36	X	16767911	16767911	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018360	exon9	c.G1199A	p.R400H	.	.	.
PPEF1	5475	broad.mit.edu	36	X	18732075	18732075	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006240	exon14	c.G1210T	p.E404X	.	.	.
SH3KBP1	30011	broad.mit.edu	36	X	19464485	19464485	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024666	exon17	c.G1858A	p.D620N	.	.	.
MAP7D2	256714	broad.mit.edu	36	X	19944318	19944318	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168465	exon11	c.C1459T	p.R487C	.	.	.
MBTPS2	51360	broad.mit.edu	36	X	21810548	21810548	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015884	exon11	c.C1414T	p.L472L	.	.	.
ZNF645	158506	broad.mit.edu	36	X	22201311	22201311	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152577	exon1	c.G282A	p.P94P	.	.	.
DCAF8L1	139425	broad.mit.edu	36	X	27907786	27907786	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017930	exon1	c.G1587A	p.K529K	.	.	.
ARSE	415	broad.mit.edu	36	X	2871135	2871135	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000047	exon8	c.A1097G	p.Q366R	.	.	.
IL1RAPL1	11141	broad.mit.edu	36	X	29883608	29883608	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014271	exon11	c.C1841T	p.T614M	.	.	.
GK	2710	broad.mit.edu	36	X	30622509	30622509	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128127	exon6	c.A486G	p.R162R	.	.	.
DMD	1756	broad.mit.edu	36	X	32308575	32308575	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004011	exon6	c.T795G	p.N265K	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3239335	3239335	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015419	exon7	c.C6909A	p.V2303V	.	.	.
CXorf59	286464	broad.mit.edu	36	X	35999983	35999983	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173695	exon3	c.A164C	p.E55A	.	.	.
CYBB	1536	broad.mit.edu	36	X	37540272	37540272	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000397	exon6	c.C612A	p.V204V	.	.	.
SYTL5	94122	broad.mit.edu	36	X	37778146	37778146	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138780	exon2	c.G60T	p.M20I	.	.	.
RPGR	6103	broad.mit.edu	36	X	38063115	38063115	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000328	exon5	c.G380T	p.R127I	.	.	.
OTC	5009	broad.mit.edu	36	X	38125583	38125583	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000531	exon4	c.G343A	p.D115N	.	.	.
EFHC2	80258	broad.mit.edu	36	X	43986478	43986478	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025184	exon8	c.G1113T	p.E371D	.	.	.
ZNF182	7569	broad.mit.edu	36	X	47720824	47720824	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006962	exon7	c.C1606A	p.H536N	.	.	.
TBC1D25	4943	broad.mit.edu	36	X	48284758	48284758	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002536	exon2	c.G217A	p.A73T	.	.	.
PQBP1	10084	broad.mit.edu	36	X	48644241	48644241	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005710	exon3	c.G270T	p.K90N	.	.	.
KCND1	3750	broad.mit.edu	36	X	48711192	48711192	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004979	exon1	c.C431T	p.A144V	.	.	.
SYP	6855	broad.mit.edu	36	X	48941144	48941144	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003179	exon3	c.C201T	p.I67I	.	.	.
CACNA1F	778	broad.mit.edu	36	X	48975115	48975115	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005183	exon2	c.C244T	p.R82X	.	.	.
GPR173	54328	broad.mit.edu	36	X	53123362	53123362	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018969	exon2	c.C834A	p.V278V	.	.	.
KDM5C	8242	broad.mit.edu	36	X	53262002	53262002	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004187	exon6	c.G760T	p.D254Y	.	.	.
SMC1A	8243	broad.mit.edu	36	X	53423796	53423796	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006306	exon25	c.G3655A	p.D1219N	.	.	.
USP51	158880	broad.mit.edu	36	X	55530600	55530600	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201286	exon2	c.G1498A	p.A500T	.	.	.
USP51	158880	broad.mit.edu	36	X	55531303	55531303	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201286	exon2	c.A795G	p.K265K	.	.	.
FAM123B	139285	broad.mit.edu	36	X	63327322	63327322	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152424	exon2	c.G2570A	p.R857Q	.	.	.
AR	367	broad.mit.edu	36	X	66682578	66682578	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000044	exon1	c.G865A	p.E289K	.	.	.
EDA	1896	broad.mit.edu	36	X	69169975	69169975	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005609	exon7	c.C796A	p.L266I	.	.	.
DGAT2L6	347516	broad.mit.edu	36	X	69341675	69341675	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198512	exon7	c.T1008C	p.I336I	.	.	.
SLC7A3	84889	broad.mit.edu	36	X	70063136	70063136	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032803	exon10	c.G1586T	p.R529I	.	.	.
MED12	9968	broad.mit.edu	36	X	70255978	70255978	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005120	exon2	c.G130T	p.G44C	.	.	.
MED12	9968	broad.mit.edu	36	X	70258319	70258319	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005120	exon7	c.G1029A	p.S343S	.	.	.
NLGN3	54413	broad.mit.edu	36	X	70303979	70303979	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166660	exon5	c.T1187G	p.F396C	.	.	.
ZMYM3	9203	broad.mit.edu	36	X	70380544	70380544	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171162	exon21	c.C3256T	p.R1086C	.	.	.
TAF1	6872	broad.mit.edu	36	X	70514903	70514903	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138923	exon7	c.C1024T	p.R342C	.	.	.
OGT	8473	broad.mit.edu	36	X	70710208	70710208	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181673	exon22	c.C2950T	p.R984C	.	.	.
RGAG4	340526	broad.mit.edu	36	X	71267257	71267257	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024455	exon1	c.G859T	p.E287X	.	.	.
NHSL2	340527	broad.mit.edu	36	X	71275494	71275494	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013627	exon6	c.C1371T	p.Y457Y	.	.	.
PHKA1	5255	broad.mit.edu	36	X	71717619	71717619	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172436	exon30	c.C3414T	p.Y1138Y	.	.	.
NAP1L2	4674	broad.mit.edu	36	X	72349992	72349992	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021963	exon1	c.C1062A	p.I354I	.	.	.
KIAA2022	340533	broad.mit.edu	36	X	73877781	73877781	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008537	exon3	c.C3336A	p.I1112I	.	.	.
KIAA2022	340533	broad.mit.edu	36	X	73880331	73880331	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008537	exon3	c.G786T	p.E262D	.	.	.
ATRX	546	broad.mit.edu	36	X	76776801	76776801	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000489	exon17	c.G4749T	p.K1583N	.	.	.
ATRX	546	broad.mit.edu	36	X	76825651	76825651	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000489	exon9	c.G1753A	p.E585K	.	.	.
ATRX	546	broad.mit.edu	36	X	76825864	76825864	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000489	exon9	c.G1540T	p.D514Y	.	.	.
ATRX	546	broad.mit.edu	36	X	76826242	76826242	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000489	exon9	c.A1162C	p.K388Q	.	.	.
MAGT1	84061	broad.mit.edu	36	X	77017589	77017589	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032121	exon2	c.C360T	p.V120V	.	.	.
P2RY10	27334	broad.mit.edu	36	X	78103553	78103553	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198333	exon2	c.G880A	p.A294T	.	.	.
TBX22	50945	broad.mit.edu	36	X	79169416	79169416	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109878	exon7	c.G804A	p.T268T	.	.	.
DACH2	117154	broad.mit.edu	36	X	85956375	85956375	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053281	exon10	c.G1566T	p.E522D	.	.	.
FAM9B	171483	broad.mit.edu	36	X	8960469	8960469	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_205849	exon2	c.G62T	p.R21I	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91019870	91019870	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032968	exon2	c.G1975A	p.V659I	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91343096	91343096	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032968	exon3	c.C3100A	p.H1034N	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91760520	91760520	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032968	exon7	c.G3969T	p.L1323F	.	.	.
FAM133A	286499	broad.mit.edu	36	X	92851456	92851456	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171110	exon5	c.G382T	p.G128X	.	.	.
RPA4	29935	broad.mit.edu	36	X	96026558	96026558	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013347	exon1	c.G593A	p.R198H	.	.	.
DIAPH2	1730	broad.mit.edu	36	X	96389443	96389443	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006729	exon23	c.G2793T	p.K931N	.	.	.
TNMD	64102	broad.mit.edu	36	X	99735978	99735978	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022144	exon4	c.T386G	p.I129S	.	.	.
UTY	7404	broad.mit.edu	36	Y	13927384	13927384	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007125	exon21	c.C3053A	p.S1018Y	.	.	.
PCDH11Y	83259	broad.mit.edu	36	Y	5026401	5026401	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032971	exon5	c.G749A	p.R250K	.	.	.
PCDH11Y	83259	broad.mit.edu	36	Y	5026985	5026985	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032971	exon5	c.C1333A	p.L445I	.	.	.
