Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
IDH2	3418	genome.wustl.edu	36	15	88432938	88432938	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	15	88432938	88432938	C	T	SNP	IDH2	NM_002168	human	genbank	54_36p	-1	reviewed	missense	c.419	p.R140Q	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
UMODL1	89766	genome.wustl.edu	36	21	42416262	42416262	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	42416262	42416262	G	A	SNP	UMODL1	NM_173568	human	genbank	54_36p	+1	validated	missense	c.3464	p.S1155N	0.977	HMMPfam_Zona_pellucida,HMMSmart_SM00241	HMMPfam_EMI,superfamily_Elafin-like,HMMPfam_WAP,HMMSmart_SM00217,PatternScan_4_DISULFIDE_CORE,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_SEA domain,HMMPfam_SEA,HMMPfam_fn3,HMMPfam_Zona_pellucida,HMMSmart_SM00241	-	no_errors
RNF5	6048	genome.wustl.edu	36	6	32254298	32254298	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	32254298	32254298	C	T	SNP	RNF5	NM_006913	human	genbank	54_36p	+1	reviewed	missense	c.32	p.P11L	0.987	superfamily_SSF57850	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors
FRG1	2483	genome.wustl.edu	36	4	191111231	191111231	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	191111231	191111231	A	C	SNP	FRG1	NM_004477	human	genbank	54_36p	+1	reviewed	missense	c.274	p.S92R	0.996	superfamily_Actin-crosslinking proteins,HMMPfam_FRG1	PatternScan_LIPOCALIN,superfamily_Actin-crosslinking proteins,HMMPfam_FRG1	-	no_errors
CD97	976	genome.wustl.edu	36	19	14377616	14377616	+	Silent	SNP	G	G	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	14377616	14377616	G	A	SNP	CD97	NM_078481	human	genbank	54_36p	+1	reviewed	silent	c.1686	p.L562	0.697	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2	HMMSmart_SM00181,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
LAMA1	284217	genome.wustl.edu	36	18	7026046	7026046	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	18	7026046	7026046	G	T	SNP	LAMA1	NM_005559	human	genbank	54_36p	-1	validated	nonsense	c.1779	p.Y593*	0.990	HMMPfam_Laminin_B,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00281	HMMPfam_Laminin_B,HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00281,superfamily_EGF/Laminin	-	no_errors
TANC1	85461	genome.wustl.edu	36	2	159792618	159792618	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	159792618	159792618	T	A	SNP	TANC1	NM_033394	human	genbank	54_36p	+1	validated	missense	c.3946	p.L1316I	1.000	HMMSmart_SM00028,superfamily_TPR-like	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00248,HMMPfam_Ank,superfamily_Ankyrin repeat,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1,HMMPfam_TPR_2	-	no_errors
PLEKHG1	57480	genome.wustl.edu	36	6	151203347	151203347	+	Silent	SNP	A	A	G			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	151203347	151203347	A	G	SNP	PLEKHG1	NM_001029884	human	genbank	54_36p	+1	provisional	silent	c.3780	p.Q1260	0.092	NULL	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
LOC153328	153328	genome.wustl.edu	36	5	135198454	135198454	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	135198454	135198454	G	T	SNP	LOC153328	NM_145282	human	genbank	54_36p	+1	validated	nonsense	c.19	p.E7*	1.000	HMMPfam_Mito_carr,superfamily_Mitoch_carrier	HMMPfam_Mito_carr,superfamily_Mitoch_carrier	-	no_errors
NXF3	56000	genome.wustl.edu	36	X	102222197	102222197	+	Splice_Site	SNP	C	C	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	X	102222197	102222197	C	T	SNP	NXF3	NM_022052	human	genbank	54_36p	-1	reviewed	splice_site	c.891-1	e10-1	0.376	-	-	-	no_errors
LOC728205	728205	genome.wustl.edu	36	18	59315520	59315520	+	RNA	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	18	59315520	59315520	G	A	SNP	LOC728205	XR_015404	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
INSC	387755	genome.wustl.edu	36	11	15199673	15199673	+	Silent	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	11	15199673	15199673	G	A	SNP	INSC	NM_001031853	human	genbank	54_36p	+1	provisional	silent	c.1035	p.A345	0.876	superfamily_ARM repeat,HMMSmart_SM00185	PatternScan_PA2_HIS,superfamily_ARM repeat,HMMSmart_SM00185	-	no_errors
ASXL1	171023	genome.wustl.edu	36	20	30486388	30486388	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	30486388	30486388	G	-	DEL	ASXL1	NM_015338	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.2212	p.G738fs	0.000	NULL	NULL	-	no_errors
TOP1MT	116447	genome.wustl.edu	36	8	144479050	144479050	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	144479050	144479050	T	C	SNP	TOP1MT	NM_052963	human	genbank	54_36p	-1	reviewed	missense	c.512	p.Q171R	1.000	superfamily_TopoI_DNA_bd_euk,HMMPfam_Topoisom_I_N	superfamily_TopoI_DNA_bd_euk,HMMPfam_Topoisom_I_N,HMMSmart_TOPEUc,superfamily_DNA_brk_join_enz,HMMPfam_Topoisom_I,superfamily_Topismrse_insert,PatternScan_TOPOISOMERASE_I_EUK	-	no_errors
SEC31A	22872	genome.wustl.edu	36	4	83982417	83982417	+	Silent	SNP	G	G	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	83982417	83982417	G	A	SNP	SEC31A	NM_001077207	human	genbank	54_36p	-1	reviewed	silent	c.2868	p.G956	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
FMNL2	114793	genome.wustl.edu	36	2	153191381	153191381	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	2	153191381	153191381	G	A	SNP	FMNL2	NM_052905	human	genbank	54_36p	+1	reviewed	missense	c.2059	p.G687R	1.000	superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2	HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2	-	no_errors
DCLK1	9201	genome.wustl.edu	36	13	35343426	35343426	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	13	35343426	35343426	C	T	SNP	DCLK1	NM_004734	human	genbank	54_36p	-1	validated	missense	c.875	p.R292H	1.000	NULL	superfamily_SSF89837,HMMSmart_DCX,HMMPfam_DCX,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
LPA	4018	genome.wustl.edu	36	6	160918157	160918157	+	Splice_Site	SNP	C	C	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	6	160918157	160918157	C	T	SNP	LPA	NM_005577	human	genbank	54_36p	-1	validated	splice_site	c.4631+1	e28+1	1.000	-	-	-	no_errors
CTTNBP2NL	55917	genome.wustl.edu	36	1	112798626	112798626	+	Silent	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	1	112798626	112798626	G	A	SNP	CTTNBP2NL	NM_018704	human	genbank	54_36p	+1	validated	silent	c.363	p.R121	1.000	HMMPfam_CortBP2	HMMPfam_CortBP2	-	no_errors
ABCB9	23457	genome.wustl.edu	36	12	122000407	122000407	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	122000407	122000407	G	A	SNP	ABCB9	NM_019625	human	genbank	54_36p	-1	reviewed	missense	c.728	p.A243V	1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
DYSF	8291	genome.wustl.edu	36	2	71763306	71763306	+	Silent	SNP	C	C	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	71763306	71763306	C	T	SNP	DYSF	NM_003494	human	genbank	54_36p	+1	reviewed	silent	c.6195	p.Y2065	0.987	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00693,HMMSmart_SM00694,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerA,HMMPfam_FerB,HMMPfam_FerI	-	no_errors
PCLO	27445	genome.wustl.edu	36	7	82376253	82376253	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	7	82376253	82376253	C	T	SNP	PCLO	NM_033026	human	genbank	54_36p	-1	validated	missense	c.13313	p.R4438H	1.000	NULL	superfamily_FYVE/PHD zinc finger,HMMPfam_zf-piccolo,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
ENSG00000210082	0	genome.wustl.edu	36	MT	1856	1856	+	RNA	SNP	T	T	C			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	1856	1856	T	C	SNP	ENSG00000210082	ENST00000387347	human	ensembl	54_36p	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
GJB5	2709	genome.wustl.edu	36	1	34996214	34996214	+	Silent	SNP	C	C	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	34996214	34996214	C	T	SNP	GJB5	NM_005268	human	genbank	54_36p	+1	provisional	silent	c.696	p.H232	0.002	NULL	HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2	-	no_errors
SPTB	6710	genome.wustl.edu	36	14	64333058	64333058	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	64333058	64333058	C	T	SNP	SPTB	NM_001024858	human	genbank	54_36p	-1	validated	nonsense	c.1311	p.W437*	1.000	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_PH,HMMSmart_PH,HMMPfam_Spectrin,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin,superfamily_SSF50729	-	no_errors
SBK2	646643	genome.wustl.edu	36	19	60739287	60739287	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	60739287	60739287	C	T	SNP	SBK2	NM_001101401	human	genbank	54_36p	-1	provisional	missense	c.187	p.E63K	0.965	superfamily_Kinase_like,HMMPfam_Pkinase	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
ECEL1	9427	genome.wustl.edu	36	2	233057818	233057818	+	Silent	SNP	C	C	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	233057818	233057818	C	T	SNP	ECEL1	NM_004826	human	genbank	54_36p	-1	validated	silent	c.996	p.R332	0.010	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M13_N"	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13"	-	no_errors
NES	10763	genome.wustl.edu	36	1	154906314	154906315	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	154906314	154906315	-	A	INS	NES	NM_006617	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.4290_4289	p.R1430fs	0.009:0.001	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors
TYRO3	7301	genome.wustl.edu	36	15	39642181	39642181	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	15	39642181	39642181	C	T	SNP	TYRO3	NM_006293	human	genbank	54_36p	+1	provisional	missense	c.553	p.P185S	0.035	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
ALPK3	57538	genome.wustl.edu	36	15	83202326	83202326	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	83202326	83202326	C	T	SNP	ALPK3	NM_020778	human	genbank	54_36p	+1	validated	missense	c.3959	p.A1320V	0.000	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
POM121L12	285877	genome.wustl.edu	36	7	53071334	53071334	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	53071334	53071334	G	A	SNP	DKFZp564N2472	NM_182595	human	genbank	54_36p	+1	validated	missense	c.476	p.R159H	0.001	NULL	NULL	-	no_errors
POLR2E	5434	genome.wustl.edu	36	19	1041936	1041936	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	1041936	1041936	C	A	SNP	POLR2E	NM_002695	human	genbank	54_36p	-1	reviewed	nonsense	c.400	p.E134*	1.000	superfamily_RNA_pol_Rpb5_N	HMMPfam_RNA_pol_Rpb5_N,superfamily_RNA_pol_Rpb5_N,HMMPfam_RNA_pol_Rpb5_C,superfamily_RNApol_RPB5_like,PatternScan_RNA_POL_H_23KD	-	no_errors
USP6	9098	genome.wustl.edu	36	17	5005548	5005548	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	17	5005548	5005548	G	A	SNP	USP6	NM_004505	human	genbank	54_36p	+1	validated	missense	c.2830	p.D944N	1.000	superfamily_Cysteine proteinases,HMMPfam_UCH	superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
SIGLEC1	6614	genome.wustl.edu	36	20	3635158	3635158	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	3635158	3635158	C	A	SNP	SIGLEC1	NM_023068	human	genbank	54_36p	-1	reviewed	missense	c.245	p.R82L	0.002	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin	-	no_errors
LOC388885	388885	genome.wustl.edu	36	22	22996046	22996046	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	22996046	22996046	C	T	SNP	LOC388885	XM_373949	human	genbank	54_36p	-1	model	missense	c.55	p.E19K	1.000	HMMPfam_S10_plectin	HMMPfam_S10_plectin	-	pseudogene
TMEM131	23505	genome.wustl.edu	36	2	97744969	97744969	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	97744969	97744969	C	T	SNP	TMEM131	NM_015348	human	genbank	54_36p	-1	validated	missense	c.4850	p.R1617Q	1.000	NULL	NULL	-	no_errors
CAMKK1	84254	genome.wustl.edu	36	17	3732306	3732306	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	17	3732306	3732306	G	A	SNP	CAMKK1	NM_172207	human	genbank	54_36p	-1	reviewed	missense	c.793	p.R265C	0.001	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
SRA1	10011	genome.wustl.edu	36	5	139910518	139910518	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	139910518	139910518	G	A	SNP	SRA1	NM_001035235	human	genbank	54_36p	-1	reviewed	missense	c.662	p.A221V	0.005	HMMPfam_SRA1	HMMPfam_SRA1	-	no_errors
RUNX1	861	genome.wustl.edu	36	21	35174726	35174731	+	In_Frame_Del	DEL	CTTCCA	CTTCCA	-			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	CTTCCA	CTTCCA			CTTCCA	CTTCCA	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	21	35174726	35174731	CTTCCA	-	DEL	RUNX1	NM_001754	human	genbank	54_36p	-1	reviewed	in_frame_del	c.506_501	p.SG167in_frame_del	1.000:1.000:1.000:1.000:1.000:0.990	superfamily_p53-like transcription factors,HMMPfam_Runt	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
SIDT2	51092	genome.wustl.edu	36	11	116555328	116555328	+	Silent	SNP	C	C	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	116555328	116555328	C	T	SNP	SIDT2	NM_001040455	human	genbank	54_36p	+1	validated	silent	c.139	p.L47	1.000	NULL	NULL	-	no_errors
CCDC150	284992	genome.wustl.edu	36	2	197302357	197302357	+	Splice_Site	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	2	197302357	197302357	G	A	SNP	CCDC150	NM_001080539	human	genbank	54_36p	+1	provisional	splice_site	c.2751+1	e23+1	0.997	-	-	-	no_errors
IFT140	9742	genome.wustl.edu	36	16	1577306	1577306	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	1577306	1577306	T	A	SNP	IFT140	NM_014714	human	genbank	54_36p	-1	validated	missense	c.903	p.R301S	0.994	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40,superfamily_TPR-like	-	no_errors
AKAP12	9590	genome.wustl.edu	36	6	151715435	151715435	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	6	151715435	151715435	G	A	SNP	AKAP12	NM_005100	human	genbank	54_36p	+1	reviewed	missense	c.4216	p.V1406I	0.000	NULL	HMMPfam_WSK,HMMPfam_RII_binding_1	-	no_errors
uc002vdl.1	0	genome.wustl.edu	36	2	210491539	210491539	+	Silent	SNP	G	G	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	210491539	210491539	G	A	SNP	uc002vdl.1	ENST00000272845	human	ensembl	54_36p	+1	known	silent	c.2577	p.P859	0.915	NULL	NULL	-	no_start_codon
CPAMD8	27151	genome.wustl.edu	36	19	16899875	16899875	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	16899875	16899875	A	G	SNP	CPAMD8	NM_015692	human	genbank	54_36p	-1	validated	missense	c.3455	p.L1152P	1.000	NULL	HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep,superfamily_Kazal-type serine protease inhibitors,HMMSmart_SM00280,HMMPfam_Kazal_1	-	no_errors
GMPR2	51292	genome.wustl.edu	36	14	23776187	23776187	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	23776187	23776187	G	A	SNP	GMPR2	NM_016576	human	genbank	54_36p	+1	validated	missense	c.590	p.G197E	1.000	superfamily_Inosine monophosphate dehydrogenase (IMPDH),HMMPfam_IMPDH,PatternScan_IMP_DH_GMP_RED	superfamily_Inosine monophosphate dehydrogenase (IMPDH),HMMPfam_IMPDH,PatternScan_IMP_DH_GMP_RED	-	no_errors
IRF2	3660	genome.wustl.edu	36	4	185547173	185547173	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	185547173	185547173	C	G	SNP	IRF2	NM_002199	human	genbank	54_36p	-1	reviewed	missense	c.783	p.Q261H	1.000	NULL	"HMMSmart_SM00348,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_IRF,PatternScan_IRF"	-	no_errors
TBC1D8	11138	genome.wustl.edu	36	2	101010296	101010296	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	2	101010296	101010296	T	G	SNP	TBC1D8	NM_001102426	human	genbank	54_36p	-1	validated	missense	c.2456	p.E819A	1.000	superfamily_EF-hand	HMMPfam_GRAM,HMMSmart_SM00568,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164,superfamily_EF-hand	-	no_errors
CATSPER1	117144	genome.wustl.edu	36	11	65545215	65545215	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	65545215	65545215	T	C	SNP	CATSPER1	NM_053054	human	genbank	54_36p	-1	reviewed	missense	c.1709	p.Q570R	0.998	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
LINC00324	284029	genome.wustl.edu	36	17	8066613	8066613	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	8066613	8066613	T	C	SNP	C17orf44	ENST00000315707	human	ensembl	54_36p	-1	known	missense	c.316	p.I106V	0.000	NULL	NULL	-	no_errors
TMEM147	10430	genome.wustl.edu	36	19	40730119	40730119	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	40730119	40730119	C	T	SNP	TMEM147	NM_032635	human	genbank	54_36p	+1	provisional	missense	c.605	p.A202V	1.000	NULL	HMMPfam_DUF2053	-	no_errors
RUNX1	861	genome.wustl.edu	36	21	35174730	35174731	+	Missense_Mutation	DNP	CA	CA	GT			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	CA	CA			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	35174730	35174731	CA	GT	SNP	RUNX1	NM_001754	human	genbank	54_36p	-1	reviewed	missense	c.502-c.501	p.G168R-p.S167R	1.000	superfamily_p53-like transcription factors,HMMPfam_Runt	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
NODAL	4838	genome.wustl.edu	36	10	71862834	71862834	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	71862834	71862834	T	C	SNP	NODAL	NM_018055	human	genbank	54_36p	-1	reviewed	missense	c.908	p.Y303C	0.997	superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB	superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	-	no_errors
P2RY2	5029	genome.wustl.edu	36	11	72623927	72623927	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	11	72623927	72623927	T	C	SNP	P2RY2	NM_002564	human	genbank	54_36p	+1	reviewed	missense	c.1075	p.S359P	0.000	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
ZNF311	282890	genome.wustl.edu	36	6	29071725	29071725	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	6	29071725	29071725	G	A	SNP	ZNF311	NM_001010877	human	genbank	54_36p	-1	provisional	missense	c.1033	p.R345C	0.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
C20orf26	26074	genome.wustl.edu	36	20	20027446	20027446	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	20	20027446	20027446	C	T	SNP	C20orf26	NM_015585	human	genbank	54_36p	+1	predicted	nonsense	c.847	p.R283*	0.000	NULL	superfamily_Acyl-CoA N-acyltransferases (Nat),superfamily_FAD/NAD(P)-binding domain	-	no_errors
OSBP2	23762	genome.wustl.edu	36	22	29596557	29596557	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	29596557	29596557	G	C	SNP	OSBP2	NM_030758	human	genbank	54_36p	+1	reviewed	missense	c.995	p.R332P	1.000	NULL	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like,HMMPfam_Oxysterol_BP,PatternScan_OSBP	-	no_errors
ODZ3	55714	genome.wustl.edu	36	4	183901404	183901404	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	4	183901404	183901404	G	A	SNP	ODZ3	NM_001080477	human	genbank	54_36p	+1	provisional	missense	c.3467	p.R1156H	1.000	superfamily_ConA_like_lec_gl	HMMPfam_Ten_N,HMMPfam_EGF_2,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196,HMMSmart_EGF,superfamily_CarboxypepD_reg,superfamily_SSF101898,HMMPfam_NHL,superfamily_SSF63829,HMMPfam_RHS_repeat	-	no_errors
KRT20	54474	genome.wustl.edu	36	17	36294725	36294725	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	17	36294725	36294725	C	T	SNP	KRT20	NM_019010	human	genbank	54_36p	-1	reviewed	missense	c.239	p.R80H	1.000	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
ENSG00000210151	0	genome.wustl.edu	36	MT	7497	7497	+	RNA	SNP	T	T	C			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	7497	7497	T	C	SNP	ENSG00000210151	ENST00000387416	human	ensembl	54_36p	-1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
TCHH	7062	genome.wustl.edu	36	1	150351323	150351323	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	150351323	150351323	C	G	SNP	TCHH	NM_007113	human	genbank	54_36p	-1	provisional	missense	c.994	p.E332Q	0.002	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1	-	no_errors
LOC100128989	100128989	genome.wustl.edu	36	X	74674244	74674244	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	X	74674244	74674244	T	G	SNP	LOC100128989	XM_001716779	human	genbank	54_36p	-1	model	missense	c.366	p.K122N	0.999	NULL	NULL	-	no_start_codon
SLC4A10	57282	genome.wustl.edu	36	2	162529890	162529890	+	Silent	SNP	C	C	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	162529890	162529890	C	T	SNP	SLC4A10	NM_022058	human	genbank	54_36p	+1	validated	silent	c.3030	p.P1010	0.994	NULL	superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp,PatternScan_HTH_ARAC_FAMILY_1	-	no_errors
KIAA1614	57710	genome.wustl.edu	36	1	179176998	179176998	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	179176998	179176998	G	T	SNP	KIAA1614	NM_020950	human	genbank	54_36p	+1	validated	missense	c.3113	p.G1038V	0.107	NULL	NULL	-	no_errors
ZNF74	7625	genome.wustl.edu	36	22	19090390	19090390	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	19090390	19090390	G	A	SNP	ZNF74	NM_003426	human	genbank	54_36p	+1	validated	missense	c.1067	p.G356D	0.999	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
RAB24	53917	genome.wustl.edu	36	5	176661552	176661552	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	176661552	176661552	G	T	SNP	RAB24	NM_001031677	human	genbank	54_36p	-1	validated	missense	c.527	p.A176D	1.000	NULL	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	-	no_errors
IGHG3	3502	genome.wustl.edu	36	14	105305233	105305233	+	Silent	SNP	A	A	G			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	105305233	105305233	A	G	SNP	IGHG3	ENST00000390550	human	ensembl	54_36p	-1	known	silent	c.1218	p.C406	1.000	NULL	PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
DNAJC10	54431	genome.wustl.edu	36	2	183328012	183328012	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	183328012	183328012	A	T	SNP	DNAJC10	NM_018981	human	genbank	54_36p	+1	provisional	missense	c.1589	p.N530I	1.000	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,superfamily_Thioredoxin-like,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1	-	no_errors
C22orf42	150297	genome.wustl.edu	36	22	30885094	30885094	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	22	30885094	30885094	C	A	SNP	C22orf42	NM_001010859	human	genbank	54_36p	-1	provisional	missense	c.109	p.A37S	0.000	NULL	NULL	-	no_errors
GPR88	54112	genome.wustl.edu	36	1	100777763	100777763	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	100777763	100777763	G	A	SNP	GPR88	NM_022049	human	genbank	54_36p	+1	validated	missense	c.653	p.R218H	0.798	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
CAMP	820	genome.wustl.edu	36	3	48240122	48240122	+	Silent	SNP	G	G	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	48240122	48240122	G	T	SNP	CAMP	NM_004345	human	genbank	54_36p	+1	validated	silent	c.117	p.V39	0.027	HMMPfam_Cathelicidins,superfamily_SSF54403,PatternScan_CATHELICIDINS_1	HMMPfam_Cathelicidins,superfamily_SSF54403,PatternScan_CATHELICIDINS_1,PatternScan_CATHELICIDINS_2	-	no_errors
SPON2	10417	genome.wustl.edu	36	4	1151431	1151431	+	Silent	SNP	C	C	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	1151431	1151431	C	T	SNP	SPON2	NM_012445	human	genbank	54_36p	-1	validated	silent	c.825	p.P275	0.989	NULL	HMMPfam_Spond_N,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	-	no_errors
LAPTM4B	55353	genome.wustl.edu	36	8	98857428	98857428	+	Silent	SNP	G	G	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	98857428	98857428	G	A	SNP	LAPTM4B	NM_018407	human	genbank	54_36p	+1	validated	silent	c.288	p.A96	0.981	NULL	HMMPfam_Mtp	-	no_errors
PNPLA6	10908	genome.wustl.edu	36	19	7529941	7529941	+	Silent	SNP	G	G	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	7529941	7529941	G	A	SNP	PNPLA6	NM_006702	human	genbank	54_36p	+1	validated	silent	c.3489	p.Q1163	1.000	superfamily_Acyl_Trfase/lysoPlipase	superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,superfamily_Acyl_Trfase/lysoPlipase,HMMPfam_Patatin,PatternScan_UPF0028	-	no_errors
ZC3H11B	643136	genome.wustl.edu	36	1	217850332	217850332	+	RNA	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	1	217850332	217850332	G	A	SNP	ZC3H11B	XR_041768	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.997	-	-	-	pseudogene
HTR6	3362	genome.wustl.edu	36	1	19865106	19865106	+	Silent	SNP	C	C	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	19865106	19865106	C	T	SNP	HTR6	NM_000871	human	genbank	54_36p	+1	provisional	silent	c.273	p.R91	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
FBXL19	54620	genome.wustl.edu	36	16	30848919	30848919	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	30848919	30848919	G	A	SNP	FBXL19	NM_001099784	human	genbank	54_36p	+1	provisional	missense	c.874	p.A292T	0.951	NULL	HMMPfam_zf-CXXC,HMMSmart_SM00249,PatternScan_ZF_PHD_1,HMMSmart_SM00256,HMMPfam_F-box,superfamily_RNI-like,HMMSmart_SM00367	-	no_errors
FREM3	166752	genome.wustl.edu	36	4	144838459	144838459	+	Silent	SNP	G	G	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	144838459	144838459	G	A	SNP	FREM3	XM_094074	human	genbank	54_36p	-1	model	silent	c.2820	p.N940	0.869	NULL	HMMSmart_SM00237,HMMPfam_Calx-beta	-	no_errors
MIR142	406934	genome.wustl.edu	36	17	53763624	53763624	+	RNA	SNP	T	T	C			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	17	53763624	53763624	T	C	SNP	MIRN142	ENST00000384835	human	ensembl	54_36p	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
ODZ4	26011	genome.wustl.edu	36	11	78118150	78118150	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	78118150	78118150	C	A	SNP	ODZ4	NM_001098816	human	genbank	54_36p	-1	validated	missense	c.1339	p.A447S	0.986	NULL	superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_NHL repeat,superfamily_TolB C-terminal domain,HMMPfam_NHL,HMMPfam_RHS_repeat	-	no_errors
ANAPC2	29882	genome.wustl.edu	36	9	139200502	139200502	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	139200502	139200502	G	T	SNP	ANAPC2	NM_013366	human	genbank	54_36p	-1	reviewed	missense	c.868	p.H290N	1.000	NULL	"HMMPfam_Cullin,superfamily_Cullin homology domain,HMMSmart_SM00182,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_APC2"	-	no_errors
FLNC	2318	genome.wustl.edu	36	7	128267950	128267950	+	Silent	SNP	C	C	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	7	128267950	128267950	C	T	SNP	FLNC	NM_001458	human	genbank	54_36p	+1	reviewed	silent	c.1662	p.Y554	0.972	superfamily_E set domains,HMMPfam_Filamin,HMMSmart_SM00557	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_E set domains,HMMPfam_Filamin,HMMSmart_SM00557	-	no_errors
MAPK8IP2	23542	genome.wustl.edu	36	22	49395024	49395024	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	49395024	49395024	G	A	SNP	MAPK8IP2	ENST00000008876	human	ensembl	54_36p	+1	known	missense	c.1435	p.A479T	0.001	superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID	superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID	-	no_errors
CSNK1G1	53944	genome.wustl.edu	36	15	62251194	62251194	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	62251194	62251194	G	A	SNP	CSNK1G1	NM_022048	human	genbank	54_36p	-1	validated	missense	c.1258	p.R420C	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
GCN1L1	10985	genome.wustl.edu	36	12	119056525	119056525	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	12	119056525	119056525	G	A	SNP	GCN1L1	NM_006836	human	genbank	54_36p	-1	validated	missense	c.7270	p.R2424W	1.000	superfamily_ARM repeat,HMMPfam_HEAT	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors
DLGAP4	22839	genome.wustl.edu	36	20	34497929	34497929	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	34497929	34497929	C	T	SNP	DLGAP4	NM_014902	human	genbank	54_36p	+1	reviewed	missense	c.1003	p.P335S	1.000	NULL	HMMPfam_GKAP	-	no_errors
FAM154B	283726	genome.wustl.edu	36	15	80361550	80361550	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	15	80361550	80361550	C	T	SNP	FAM154B	NM_001008226	human	genbank	54_36p	+1	predicted	missense	c.289	p.L97F	0.864	NULL	NULL	-	no_errors
KIAA1683	80726	genome.wustl.edu	36	19	18236999	18236999	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	18236999	18236999	G	A	SNP	KIAA1683	NM_025249	human	genbank	54_36p	-1	validated	missense	c.2351	p.A784V	0.010	NULL	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
FGF8	2253	genome.wustl.edu	36	10	103521241	103521241	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	103521241	103521241	C	T	SNP	FGF8	NM_033163	human	genbank	54_36p	-1	reviewed	missense	c.413	p.C138Y	1.000	superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF	superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF,PatternScan_HBGF_FGF	-	no_errors
GK2	2712	genome.wustl.edu	36	4	80547270	80547270	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	80547270	80547270	G	T	SNP	GK2	NM_033214	human	genbank	54_36p	-1	validated	missense	c.1109	p.P370H	0.924	superfamily_SSF53067,HMMPfam_FGGY_C	superfamily_SSF53067,HMMPfam_FGGY_N,PatternScan_FGGY_KINASES_1,HMMPfam_FGGY_C,PatternScan_FGGY_KINASES_2	-	no_errors
GPR124	25960	genome.wustl.edu	36	8	37816921	37816921	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	8	37816921	37816921	C	T	SNP	GPR124	NM_032777	human	genbank	54_36p	+1	validated	missense	c.2615	p.P872L	0.875	NULL	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMSmart_SM00409,superfamily_Hormone receptor domain (HRM Pfam 02793),HMMPfam_HRM,HMMPfam_GPS,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
CNTNAP5	129684	genome.wustl.edu	36	2	124695812	124695812	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2807-03B-01W-0728-08	TCGA-AB-2807-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	124695812	124695812	A	T	SNP	CNTNAP5	NM_130773	human	genbank	54_36p	+1	reviewed	missense	c.143	p.D48V	0.610	HMMSmart_FA58C,superfamily_Gal_bind_like,HMMPfam_F5_F8_type_C	PatternScan_FA58C_1,PatternScan_FIBRIN_AG_C_DOMAIN,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_FA58C,superfamily_Gal_bind_like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_2,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMSmart_EGF,HMMPfam_EGF,superfamily_Fibrinogen_a/b/g_C	-	no_errors
LOC100129218	100129218	genome.wustl.edu	36	12	51196813	51196813	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2807-03D-01W-0755-09	TCGA-AB-2807-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	12	51196813	51196813	G	T	SNP	LOC100129218	XM_001718439	human	genbank	54_36p	+1	model	missense	c.1642	p.G548C	1.000	NULL	NULL	-	no_errors
