Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
OR11H12	440153	genome.wustl.edu	36	14	18447885	18447885	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	18447885	18447885	G	A	SNP	OR11H12	NM_001013354	human	genbank	54_36p	+1	provisional	missense	c.292	p.V98I	0.016	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
uc004ewl.1	0	genome.wustl.edu	36	X	130985068	130985068	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	130985068	130985068	G	C	SNP	uc004ewl.1	ENST00000370887	human	ensembl	54_36p	+1	known	missense	c.82	p.G28R	0.001	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	-	no_start_codon
RIC8A	60626	genome.wustl.edu	36	11	199895	199897	+	In_Frame_Del	DEL	CCC	CCC	-			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	CCC	CCC			CCC	CCC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	199895	199897	CCC	-	DEL	RIC8A	NM_021932	human	genbank	54_36p	+1	provisional	in_frame_del	c.621_623	p.P210in_frame_del	0.002:0.010:0.001	HMMPfam_Ric8	HMMPfam_Ric8	-	no_errors
ACTA1	58	genome.wustl.edu	36	1	227634410	227634410	+	Silent	SNP	G	G	A			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	227634410	227634410	G	A	SNP	ACTA1	NM_001100	human	genbank	54_36p	-1	reviewed	silent	c.762	p.N254	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_1,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519128	7519128	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	7519128	7519128	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.527	p.C176Y	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
SLC38A6	145389	genome.wustl.edu	36	14	60586994	60586994	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	60586994	60586994	T	A	SNP	SLC38A6	NM_153811	human	genbank	54_36p	+1	provisional	missense	c.937	p.S313T	1.000	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
DLD	1738	genome.wustl.edu	36	7	107343262	107343262	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	107343262	107343262	G	A	SNP	DLD	NM_000108	human	genbank	54_36p	+1	reviewed	missense	c.760	p.D254N	1.000	superfamily_SSF51905,HMMPfam_Pyr_redox_2,HMMPfam_Pyr_redox	superfamily_SSF51905,HMMPfam_Pyr_redox_2,PatternScan_PYRIDINE_REDOX_1,HMMPfam_Pyr_redox,superfamily_FAD/NAD-linked_reductase_dimer,HMMPfam_Pyr_redox_dim	-	no_errors
HK1	3098	genome.wustl.edu	36	10	70828408	70828408	+	Silent	SNP	G	G	T			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	70828408	70828408	G	T	SNP	HK1	NM_033497	human	genbank	54_36p	+1	reviewed	silent	c.2439	p.L813	0.992	HMMPfam_Hexokinase_2,superfamily_SSF53067	superfamily_SSF53067,HMMPfam_Hexokinase_1,PatternScan_HEXOKINASES,HMMPfam_Hexokinase_2	-	no_errors
NKRF	55922	genome.wustl.edu	36	X	118607987	118607987	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	118607987	118607987	G	A	SNP	NKRF	NM_017544	human	genbank	54_36p	-1	validated	missense	c.1429	p.R477C	1.000	superfamily_dsRNA-binding domain-like,HMMSmart_SM00358	superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358,HMMSmart_SM00443,HMMPfam_G-patch,HMMSmart_SM00393,superfamily_R3H domain,HMMPfam_R3H	-	no_errors
OR13H1	347468	genome.wustl.edu	36	X	130505772	130505772	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	130505772	130505772	T	C	SNP	OR13H1	NM_001004486	human	genbank	54_36p	+1	provisional	missense	c.44	p.I15T	0.890	superfamily_SSF81321	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
CCDC74A	90557	genome.wustl.edu	36	2	132006934	132006934	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	132006934	132006934	G	A	SNP	CCDC74A	NM_138770	human	genbank	54_36p	+1	provisional	missense	c.904	p.G302R	0.918	NULL	NULL	-	no_errors
GNPTAB	79158	genome.wustl.edu	36	12	100704096	100704096	+	Silent	SNP	G	G	A			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	100704096	100704096	G	A	SNP	GNPTAB	NM_024312	human	genbank	54_36p	-1	validated	silent	c.396	p.H132	1.000	NULL	HMMSmart_SM00004,HMMPfam_Notch,superfamily_Notch domain,HMMPfam_DMAP_binding,PatternScan_EF_HAND_1	-	no_errors
MYO5B	4645	genome.wustl.edu	36	18	45772699	45772699	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	45772699	45772699	T	C	SNP	MYO5B	NM_001080467	human	genbank	54_36p	-1	provisional	missense	c.713	p.N238S	1.000	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_DIL,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CACNA1B	774	genome.wustl.edu	36	9	140136178	140136178	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	140136178	140136178	G	A	SNP	CACNA1B	NM_000718	human	genbank	54_36p	+1	validated	missense	c.6926	p.R2309H	0.988	NULL	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
SPRR4	163778	genome.wustl.edu	36	1	151211012	151211012	+	Missense_Mutation	SNP	C	C	T	rs73010454	byCluster;byFrequency;by1000genomes	TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	151211012	151211012	C	T	SNP	SPRR4	NM_173080	human	genbank	54_36p	+1	provisional	missense	c.22	p.R8W	0.928	HMMPfam_Cornifin	HMMPfam_Cornifin	-	no_errors
FAT3	120114	genome.wustl.edu	36	11	92171938	92171938	+	Silent	SNP	G	G	T			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	92171938	92171938	G	T	SNP	FAT3	NM_001008781	human	genbank	54_36p	+1	validated	silent	c.6111	p.T2037	0.992	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors
TOPORS	10210	genome.wustl.edu	36	9	32540793	32540793	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	32540793	32540793	C	A	SNP	TOPORS	NM_005802	human	genbank	54_36p	-1	validated	missense	c.177	p.R59S	0.001	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors
BBS12	166379	genome.wustl.edu	36	4	123884068	123884068	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	123884068	123884068	A	G	SNP	BBS12	NM_152618	human	genbank	54_36p	+1	validated	missense	c.1571	p.Y524C	0.790	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like	-	no_errors
ZNF518B	85460	genome.wustl.edu	36	4	10054632	10054632	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	10054632	10054632	A	T	SNP	ZNF518B	NM_053042	human	genbank	54_36p	-1	validated	missense	c.2419	p.L807I	0.001	NULL	HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
GRIK3	2899	genome.wustl.edu	36	1	37080106	37080106	+	Missense_Mutation	SNP	G	G	A	rs12982667	byHapMap	TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	37080106	37080106	G	A	SNP	GRIK3	NM_000831	human	genbank	54_36p	-1	reviewed	missense	c.1348	p.R450W	1.000	HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53850	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850,superfamily_SSF55620	-	no_errors
KIAA1683	80726	genome.wustl.edu	36	19	18237918	18237918	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	18237918	18237918	T	C	SNP	KIAA1683	NM_025249	human	genbank	54_36p	-1	validated	missense	c.1432	p.K478E	0.020	NULL	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LOC118945	118945	genome.wustl.edu	36	10	89139088	89139088	+	RNA	SNP	G	G	A			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	89139088	89139088	G	A	SNP	LOC118945	XR_016426	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
ECM2	1842	genome.wustl.edu	36	9	94319819	94319819	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2813-03B-01W-0728-08	TCGA-AB-2813-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	94319819	94319819	C	T	SNP	ECM2	NM_001393	human	genbank	54_36p	-1	reviewed	missense	c.452	p.G151E	1.000	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,superfamily_SSF52058,HMMPfam_LRR_1	-	no_errors
