Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
TIMM22	29928	genome.wustl.edu	36	17	849519	849519	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2831-03A-01W-0726-08	TCGA-AB-2831-11A-01W-0727-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	849519	849519	C	G	SNP	TIMM22	NM_013337	human	genbank	54_36p	+1	provisional	missense	c.453	p.D151E	0.997	HMMPfam_Tim17	HMMPfam_Tim17	-	no_errors
PLCXD1	55344	genome.wustl.edu	36	X	147362	147362	+	Silent	SNP	C	C	T			TCGA-AB-2831-03A-01W-0726-08	TCGA-AB-2831-11A-01W-0727-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	147362	147362	C	T	SNP	PLCXD1	NM_018390	human	genbank	54_36p	+1	validated	silent	c.312	p.D104	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl	superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors
uc010dwx.1	0	genome.wustl.edu	36	19	10018864	10018864	+	Silent	SNP	G	G	C			TCGA-AB-2831-03A-01W-0726-08	TCGA-AB-2831-11A-01W-0727-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	10018864	10018864	G	C	SNP	uc010dwx.1	ENST00000333905	human	ensembl	54_36p	+1	known	silent	c.135	p.V45	0.153	HMMPfam_A2M	HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp	-	no_errors
TAS2R31	259290	genome.wustl.edu	36	12	11074491	11074491	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2831-03A-01W-0726-08	TCGA-AB-2831-11A-01W-0727-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	11074491	11074491	T	A	SNP	TAS2R31	NM_176885	human	genbank	54_36p	-1	provisional	missense	c.711	p.L237F	0.000	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like	-	no_errors
NRAS	4893	genome.wustl.edu	36	1	115060267	115060267	+	Missense_Mutation	SNP	C	C	A	rs121434595		TCGA-AB-2831-03A-01W-0726-08	TCGA-AB-2831-11A-01W-0727-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	115060267	115060267	C	A	SNP	NRAS	NM_002524	human	genbank	54_36p	-1	reviewed	missense	c.38	p.G13V	1.000	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KIAA1217	56243	genome.wustl.edu	36	10	24853272	24853272	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2831-03A-01W-0726-08	TCGA-AB-2831-11A-01W-0727-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	24853272	24853272	G	A	SNP	KIAA1217	NM_019590	human	genbank	54_36p	+1	validated	missense	c.2471	p.G824E	0.285	NULL	NULL	-	no_errors
IDH2	3418	genome.wustl.edu	36	15	88432938	88432938	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2831-03A-01W-0726-08	TCGA-AB-2831-11A-01W-0727-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	88432938	88432938	C	T	SNP	IDH2	NM_002168	human	genbank	54_36p	-1	reviewed	missense	c.419	p.R140Q	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
ETV6	2120	genome.wustl.edu	36	12	11935141	11935141	+	Splice_Site	SNP	G	G	C			TCGA-AB-2831-03A-01W-0726-08	TCGA-AB-2831-11A-01W-0727-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	11935141	11935141	G	C	SNP	ETV6	NM_001987	human	genbank	54_36p	+1	reviewed	splice_site	c.1254-1	e8-1	1.000	-	-	-	no_errors
EP400	57634	genome.wustl.edu	36	12	131105600	131105600	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2831-03A-01W-0726-08	TCGA-AB-2831-11A-01W-0727-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	131105600	131105600	C	T	SNP	EP400	NM_015409	human	genbank	54_36p	+1	validated	missense	c.7775	p.A2592V	0.923	NULL	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_HSA,superfamily_Homeodomain_like,HMMSmart_HSA,HMMSmart_DEXDc,superfamily_SSF52540	-	no_errors
C14orf135	64430	genome.wustl.edu	36	14	59661393	59661393	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2831-03A-01W-0726-08	TCGA-AB-2831-11A-01W-0727-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	59661393	59661393	G	C	SNP	C14orf135	NM_022495	human	genbank	54_36p	+1	validated	missense	c.2049	p.R683S	0.054	NULL	HMMPfam_Pecanex_C	-	no_errors
C10orf28	27291	genome.wustl.edu	36	10	99959110	99959110	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2831-03A-01W-0726-08	TCGA-AB-2831-11A-01W-0727-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	99959110	99959110	G	A	SNP	C10orf28	NM_014472	human	genbank	54_36p	+1	validated	missense	c.1249	p.G417R	0.028	NULL	NULL	-	no_errors
CSPG4	1464	genome.wustl.edu	36	15	73769113	73769113	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2831-03A-01W-0726-08	TCGA-AB-2831-11A-01W-0727-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	73769113	73769113	T	A	SNP	CSPG4	NM_001897	human	genbank	54_36p	-1	reviewed	missense	c.1348	p.R450W	0.098	NULL	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_ATPASE_ALPHA_BETA	-	no_errors
ITGA10	8515	genome.wustl.edu	36	1	144244465	144244465	+	Silent	SNP	A	A	G			TCGA-AB-2831-03A-01W-0726-08	TCGA-AB-2831-11A-01W-0727-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	144244465	144244465	A	G	SNP	ITGA10	NM_003637	human	genbank	54_36p	+1	reviewed	silent	c.1203	p.L401	0.996	superfamily_Integrin alpha N-terminal domain	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25316667	25316676	+	Splice_Site	DEL	TCGAGGTATA	TCGAGGTATA	-			TCGA-AB-2831-03A-01W-0726-08	TCGA-AB-2831-11A-01W-0727-08	C	C			TCGAGGTATA	TCGAGGTATA	Verified	Valid	Somatic		Capture				Illumina GAIIx	2	25316667	25316676	TCGAGGTATA	0	DEL	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	splice_site_del	c.NULL	splice_site_del	0.991:0.997:0.999:0.999:0.999:1.000:1.000:1.000:1.000:1.000	-	-	(deletion:intron[25315589;25316674]; cds_exon[25316675;25316823])	NA
CD109	135228	genome.wustl.edu	36	6	74573288	74573288	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2831-03A-01W-0726-08	TCGA-AB-2831-11A-01W-0727-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	74573288	74573288	G	T	SNP	CD109	NM_133493	human	genbank	54_36p	+1	validated	missense	c.2961	p.W987C	1.000	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp	HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep	-	no_errors
LOC100130102	100130102	genome.wustl.edu	36	2	127724091	127724091	+	RNA	SNP	T	T	C			TCGA-AB-2831-03A-01W-0726-08	TCGA-AB-2831-11A-01W-0727-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	127724091	127724091	T	C	SNP	LOC100130102	XR_039053	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
MIR944	100126340	genome.wustl.edu	36	3	191030429	191030429	+	RNA	SNP	T	T	C			TCGA-AB-2831-03A-01W-0726-08	TCGA-AB-2831-11A-01W-0727-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	191030429	191030429	T	C	SNP	MIRN944	ENST00000401239	human	ensembl	54_36p	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors
LAMC2	3918	genome.wustl.edu	36	1	181456587	181456587	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2831-03A-01W-0726-08	TCGA-AB-2831-11A-01W-0727-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	181456587	181456587	C	T	SNP	LAMC2	NM_005562	human	genbank	54_36p	+1	reviewed	nonsense	c.508	p.R170*	0.996	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_LAM_1	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_1,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_EGF_2,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors
PZP	5858	genome.wustl.edu	36	12	9195491	9195491	+	Silent	SNP	G	G	A			TCGA-AB-2831-03A-01W-0726-08	TCGA-AB-2831-11A-01W-0727-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	9195491	9195491	G	A	SNP	PZP	NM_002864	human	genbank	54_36p	-1	validated	silent	c.4257	p.N1419	0.945	superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep	PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep	-	no_errors
