Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
GRIK5	2901	genome.wustl.edu	36	19	47250340	47250340	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	47250340	47250340	C	G	SNP	GRIK5	NM_002088	human	genbank	54_36p	-1	reviewed	missense	c.1028	p.G343A	1.000	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors
ENSG00000209396	0	genome.wustl.edu	36	11	3669909	3669909	+	RNA	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	3669909	3669909	C	T	SNP	ENSG00000209396	ENST00000386661	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	0.000	-	-	-	pseudogene
MAMLD1	10046	genome.wustl.edu	36	X	149389504	149389504	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	149389504	149389504	C	T	SNP	MAMLD1	NM_005491	human	genbank	54_36p	+1	validated	missense	c.1001	p.P334L	0.942	NULL	NULL	-	no_errors
DSCAML1	57453	genome.wustl.edu	36	11	116819898	116819898	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	116819898	116819898	T	C	SNP	DSCAML1	NM_020693	human	genbank	54_36p	-1	provisional	missense	c.3956	p.Q1319R	0.998	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
RNF38	152006	genome.wustl.edu	36	9	36359846	36359846	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	36359846	36359846	A	G	SNP	RNF38	NM_022781	human	genbank	54_36p	-1	reviewed	missense	c.440	p.L147P	1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors
VPS13D	55187	genome.wustl.edu	36	1	12382883	12382883	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	12382883	12382883	G	A	SNP	VPS13D	NM_015378	human	genbank	54_36p	+1	reviewed	missense	c.11693	p.S3898N	0.996	NULL	superfamily_UBA-like,HMMPfam_UBA,HMMSmart_SM00165,HMMPfam_DUF1162	-	no_errors
SBF1	6305	genome.wustl.edu	36	22	49233741	49233742	+	Splice_Site	INS	-	-	G			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	49233741	49233742	-	G	INS	SBF1	NM_002972	human	genbank	54_36p	-1	validated	splice_site_ins	c.5074-3_5074-2	e37-2	0.999:0.997	-	-	-	no_errors
ATP7B	540	genome.wustl.edu	36	13	51446861	51446861	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	51446861	51446861	G	A	SNP	ATP7B	NM_000053	human	genbank	54_36p	-1	reviewed	missense	c.496	p.R166W	0.995	superfamily_HMA heavy metal-associated domain,HMMPfam_HMA,PatternScan_HMA_1	superfamily_HMA heavy metal-associated domain,HMMPfam_HMA,PatternScan_HMA_1,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors
STK36	27148	genome.wustl.edu	36	2	219266688	219266688	+	Splice_Site	SNP	A	A	G			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	219266688	219266688	A	G	SNP	STK36	NM_015690	human	genbank	54_36p	+1	validated	splice_site	c.2149-2	e17-2	0.920	-	-	-	no_errors
LINGO2	158038	genome.wustl.edu	36	9	27939322	27939322	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	27939322	27939322	G	A	SNP	LINGO2	NM_152570	human	genbank	54_36p	-1	provisional	missense	c.1348	p.R450C	1.000	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	-	no_errors
UFSP2	55325	genome.wustl.edu	36	4	186573961	186573961	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	186573961	186573961	C	T	SNP	UFSP2	NM_018359	human	genbank	54_36p	-1	provisional	missense	c.388	p.V130I	0.878	NULL	HMMPfam_Peptidase_C78	-	no_errors
PSME4	23198	genome.wustl.edu	36	2	53969413	53969413	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	53969413	53969413	A	C	SNP	PSME4	NM_014614	human	genbank	54_36p	-1	validated	missense	c.3995	p.L1332R	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors
ARL4C	10123	genome.wustl.edu	36	2	235069459	235069459	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	235069459	235069459	C	A	SNP	ARL4C	NM_005737	human	genbank	54_36p	-1	reviewed	missense	c.511	p.G171C	1.000	HMMPfam_Arf,HMMSmart_SM00177,HMMSmart_SM00178,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_ARF	HMMPfam_Arf,HMMSmart_SM00177,HMMSmart_SM00178,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,PatternScan_ARF	-	no_errors
G6PD	2539	genome.wustl.edu	36	X	153416616	153416616	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	153416616	153416616	G	A	SNP	G6PD	NM_000402	human	genbank	54_36p	-1	reviewed	missense	c.536	p.A179V	0.686	superfamily_NAD(P)-bd,HMMPfam_G6PD_N	superfamily_NAD(P)-bd,HMMPfam_G6PD_N,PatternScan_G6P_DEHYDROGENASE,superfamily_SSF55347,HMMPfam_G6PD_C	-	no_errors
GLI1	2735	genome.wustl.edu	36	12	56151412	56151412	+	Silent	SNP	T	T	C			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	56151412	56151412	T	C	SNP	GLI1	NM_005269	human	genbank	54_36p	+1	reviewed	silent	c.2622	p.P874	0.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
MAGEC3	139081	genome.wustl.edu	36	X	140812920	140812920	+	Silent	SNP	A	A	G			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	140812920	140812920	A	G	SNP	MAGEC3	NM_138702	human	genbank	54_36p	+1	reviewed	silent	c.1710	p.E570	0.003	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
TXLNG	55787	genome.wustl.edu	36	X	16746616	16746616	+	Splice_Site	SNP	A	A	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	16746616	16746616	A	T	SNP	CXorf15	NM_018360	human	genbank	54_36p	+1	provisional	splice_site	c.103-2	e2-2	0.941	-	-	-	no_errors
PTK2B	2185	genome.wustl.edu	36	8	27368001	27368001	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	27368001	27368001	G	T	SNP	PTK2B	NM_004103	human	genbank	54_36p	+1	reviewed	missense	c.2770	p.V924L	1.000	HMMPfam_Focal_AT,superfamily_FAT domain of focal adhesion kinase	HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_Focal_AT,superfamily_FAT domain of focal adhesion kinase	-	no_errors
TFAM	7019	genome.wustl.edu	36	10	59824797	59824797	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	59824797	59824797	G	A	SNP	TFAM	NM_003201	human	genbank	54_36p	+1	provisional	missense	c.698	p.R233H	0.053	superfamily_HMG-box	superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box	-	no_errors
BEST3	144453	genome.wustl.edu	36	12	68357078	68357078	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	68357078	68357078	C	T	SNP	BEST3	NM_032735	human	genbank	54_36p	-1	validated	missense	c.752	p.C251Y	1.000	HMMPfam_Bestrophin	HMMPfam_Bestrophin	-	no_errors
RBMX2	51634	genome.wustl.edu	36	X	129363983	129363983	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	129363983	129363983	T	C	SNP	RBMX2	NM_016024	human	genbank	54_36p	+1	validated	missense	c.79	p.S27P	1.000	superfamily_RNA-binding domain RBD	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
ELF5	2001	genome.wustl.edu	36	11	34471642	34471642	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	34471642	34471642	G	A	SNP	ELF5	NM_198381	human	genbank	54_36p	-1	reviewed	silent	c.345	p.G115	0.979	superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,HMMPfam_Ets,superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_2"	-	no_errors
NKRF	55922	genome.wustl.edu	36	X	118608603	118608603	+	Silent	SNP	T	T	C			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	118608603	118608603	T	C	SNP	NKRF	NM_017544	human	genbank	54_36p	-1	validated	silent	c.813	p.V271	0.912	superfamily_dsRNA-binding domain-like	HMMPfam_G-patch,HMMSmart_SM00443,HMMPfam_dsrm,HMMSmart_SM00358,HMMPfam_R3H,HMMSmart_SM00393,superfamily_dsRNA-binding domain-like,superfamily_R3H domain	-	no_errors
LOC728698	728698	genome.wustl.edu	36	12	51834101	51834101	+	RNA	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	51834101	51834101	G	A	SNP	LOC728698	XR_015801	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
ADRA1A	148	genome.wustl.edu	36	8	26683778	26683778	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	26683778	26683778	G	A	SNP	ADRA1A	NM_033303	human	genbank	54_36p	-1	reviewed	silent	c.1206	p.S402	0.173	NULL	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
CATSPERB	79820	genome.wustl.edu	36	14	91153709	91153709	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	91153709	91153709	G	A	SNP	CATSPERB	NM_024764	human	genbank	54_36p	-1	validated	silent	c.2385	p.S795	0.005	NULL	NULL	-	no_errors
MUC16	94025	genome.wustl.edu	36	19	8908968	8908968	+	Silent	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	8908968	8908968	C	T	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	silent	c.33663	p.A11221	0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
CACNG7	59284	genome.wustl.edu	36	19	59137128	59137128	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	59137128	59137128	G	-	DEL	CACNG7	NM_031896	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.597	p.F200fs	0.999	NULL	HMMPfam_PMP22_Claudin	-	no_errors
CCL21	6366	genome.wustl.edu	36	9	34699648	34699648	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	34699648	34699648	G	A	SNP	CCL21	NM_002989	human	genbank	54_36p	-1	reviewed	silent	c.220	p.L74	0.933	superfamily_Interleukin 8-like chemokines,HMMPfam_IL8,HMMSmart_SM00199	superfamily_Interleukin 8-like chemokines,HMMPfam_IL8,HMMSmart_SM00199	-	no_errors
LRRC7	57554	genome.wustl.edu	36	1	70276678	70276678	+	Silent	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	70276678	70276678	C	T	SNP	LRRC7	NM_020794	human	genbank	54_36p	+1	validated	silent	c.2469	p.L823	0.958	NULL	superfamily_L domain-like,HMMSmart_SM00364,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_RNI-like,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
KCNC1	3746	genome.wustl.edu	36	11	17749867	17749867	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	17749867	17749867	C	A	SNP	KCNC1	NM_004976	human	genbank	54_36p	+1	reviewed	missense	c.650	p.P217H	1.000	superfamily_SSF81324	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans	-	no_errors
ARHGAP24	83478	genome.wustl.edu	36	4	87135137	87135137	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	87135137	87135137	G	A	SNP	ARHGAP24	NM_001025616	human	genbank	54_36p	+1	validated	missense	c.1306	p.G436R	0.990	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
ZNF526	116115	genome.wustl.edu	36	19	47421805	47421805	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	47421805	47421805	G	A	SNP	ZNF526	NM_133444	human	genbank	54_36p	+1	provisional	silent	c.1410	p.R470	0.871	superfamily_C2H2 and C2HC zinc fingers	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
ADAM11	4185	genome.wustl.edu	36	17	40210925	40210925	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	40210925	40210925	C	A	SNP	ADAM11	NM_002390	human	genbank	54_36p	+1	reviewed	missense	c.2150	p.T717K	0.071	NULL	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_CR,HMMSmart_SM00608,PatternScan_EGF_1,HMMPfam_EGF_2,PatternScan_DISINTEGRIN_1,superfamily_Metalloproteases (""zincins"") catalytic domain,superfamily_EGF/Laminin"	-	no_errors
CSF3R	1441	genome.wustl.edu	36	1	36705090	36705091	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	36705090	36705091	-	G	INS	CSF3R	NM_156039	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.2047_2046	p.G682fs	0.000:0.000	NULL	HMMPfam_Lep_receptor_Ig,superfamily_FN_III-like,HMMSmart_FN3,PatternScan_HEMATOPO_REC_L_F2,HMMPfam_fn3	-	no_errors
LOC100132843	100132843	genome.wustl.edu	36	10	111430279	111430279	+	RNA	SNP	T	T	C			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	111430279	111430279	T	C	SNP	LOC100132843	XR_037957	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.138	-	-	-	pseudogene
C7orf29	113763	genome.wustl.edu	36	7	149658557	149658557	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	149658557	149658557	C	T	SNP	C7orf29	NM_138434	human	genbank	54_36p	+1	validated	missense	c.131	p.A44V	0.135	NULL	NULL	-	no_errors
PKHD1	5314	genome.wustl.edu	36	6	51998546	51998546	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	51998546	51998546	G	A	SNP	PKHD1	NM_138694	human	genbank	54_36p	-1	reviewed	nonsense	c.4021	p.Q1341*	0.002	NULL	HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Pectin lyase-like,superfamily_E set domains,HMMPfam_G8	-	no_errors
ZC3H12A	80149	genome.wustl.edu	36	1	37721408	37721408	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	37721408	37721408	G	A	SNP	ZC3H12A	NM_025079	human	genbank	54_36p	+1	validated	missense	c.1409	p.G470D	0.112	NULL	NULL	-	no_errors
CYP4F11	57834	genome.wustl.edu	36	19	15886447	15886447	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	15886447	15886447	T	C	SNP	CYP4F11	NM_021187	human	genbank	54_36p	-1	reviewed	missense	c.1279	p.I427V	0.999	superfamily_Cytochrome P450,HMMPfam_p450	superfamily_Cytochrome P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	-	no_errors
TRO	7216	genome.wustl.edu	36	X	54966578	54966578	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	54966578	54966578	G	A	SNP	TRO	NM_001039705	human	genbank	54_36p	+1	reviewed	silent	c.888	p.R296	0.229	NULL	HMMPfam_MAGE	-	no_errors
GBA2	57704	genome.wustl.edu	36	9	35738642	35738642	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	35738642	35738642	G	A	SNP	GBA2	NM_020944	human	genbank	54_36p	-1	reviewed	silent	c.60	p.S20	0.198	NULL	PatternScan_HMG_COA_REDUCTASE_2,superfamily_Six-hairpin glycosidases,HMMPfam_DUF608	-	no_errors
IFT140	9742	genome.wustl.edu	36	16	1510780	1510780	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	1510780	1510780	G	A	SNP	IFT140	NM_014714	human	genbank	54_36p	-1	validated	nonsense	c.3484	p.Q1162*	1.000	superfamily_TPR-like	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320,HMMPfam_WD40,superfamily_TPR-like	-	no_errors
PCDHB16	57717	genome.wustl.edu	36	5	140543532	140543532	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140543532	140543532	C	T	SNP	PCDHB16	NM_020957	human	genbank	54_36p	+1	reviewed	missense	c.1214	p.T405M	0.301	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMSmart_CA,HMMPfam_Cadherin	-	no_errors
DLK2	65989	genome.wustl.edu	36	6	43526979	43526979	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	43526979	43526979	C	T	SNP	DLK2	NM_023932	human	genbank	54_36p	-1	validated	missense	c.428	p.R143H	0.995	HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,superfamily_EGF/Laminin	PatternScan_ZF_RING_1,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin,HMMPfam_EGF,HMMSmart_SM00179,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL	-	no_errors
ZSWIM4	65249	genome.wustl.edu	36	19	13791251	13791251	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	13791251	13791251	G	A	SNP	ZSWIM4	NM_023072	human	genbank	54_36p	+1	validated	missense	c.1654	p.A552T	0.998	NULL	HMMPfam_SWIM	-	no_errors
H6PD	9563	genome.wustl.edu	36	1	9246403	9246404	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	9246403	9246404	-	C	INS	H6PD	NM_004285	human	genbank	54_36p	+1	reviewed	frame_shift_ins	c.1264_1265	p.L423fs	0.003:0.000	superfamily_SSF55347	HMMPfam_G6PD_N,HMMPfam_G6PD_C,HMMPfam_Glucosamine_iso,superfamily_NAD(P)-bd,PatternScan_G6P_DEHYDROGENASE,superfamily_SSF100950,superfamily_SSF55347	-	no_errors
FAM166A	401565	genome.wustl.edu	36	9	139260025	139260025	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	139260025	139260025	C	T	SNP	FAM166A	NM_001001710	human	genbank	54_36p	-1	predicted	missense	c.158	p.C53Y	0.997	HMMPfam_DUF2475	HMMPfam_DUF2475	-	no_errors
RGSL1	353299	genome.wustl.edu	36	1	180776061	180776061	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	180776061	180776061	C	T	SNP	RGSL1	ENST00000367560	human	ensembl	54_36p	+1	known	missense	c.928	p.R310W	0.048	NULL	superfamily_Regulator of G-protein signaling RGS	-	no_errors
CHL1	10752	genome.wustl.edu	36	3	400539	400539	+	Silent	SNP	T	T	C			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	400539	400539	T	C	SNP	CHL1	NM_006614	human	genbank	54_36p	+1	reviewed	silent	c.2217	p.S739	1.000	superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_V-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
DHX58	79132	genome.wustl.edu	36	17	37507328	37507328	+	Silent	SNP	A	A	G			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	37507328	37507328	A	G	SNP	DHX58	NM_024119	human	genbank	54_36p	-1	validated	silent	c.2014	p.L672	0.058	NULL	superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,HMMSmart_HELICc,HMMPfam_Helicase_C	-	no_errors
CPA5	93979	genome.wustl.edu	36	7	129777064	129777064	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	129777064	129777064	C	T	SNP	CPA5	NM_080385	human	genbank	54_36p	+1	validated	missense	c.211	p.R71C	0.997	superfamily_Protease propeptides/inhibitors,HMMPfam_Propep_M14	superfamily_Protease propeptides/inhibitors,HMMPfam_Propep_M14,superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,PatternScan_CARBOXYPEPT_ZN_2	-	no_errors
SSRP1	6749	genome.wustl.edu	36	11	56854968	56854968	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	56854968	56854968	G	A	SNP	SSRP1	NM_003146	human	genbank	54_36p	-1	reviewed	silent	c.1233	p.Y411	0.990	HMMPfam_SSrecog	HMMPfam_SSrecog,superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors
CES2	8824	genome.wustl.edu	36	16	65531654	65531654	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	65531654	65531654	T	A	SNP	CES2	NM_003869	human	genbank	54_36p	+1	reviewed	missense	c.644	p.L215H	0.020	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2,PatternScan_CARBOXYLESTERASE_B_1	-	no_errors
ATP8B3	148229	genome.wustl.edu	36	19	1746920	1746920	+	Nonsense_Mutation	SNP	A	A	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	1746920	1746920	A	T	SNP	ATP8B3	NM_138813	human	genbank	54_36p	-1	reviewed	nonsense	c.2009	p.L670*	0.514	superfamily_SSF56784,superfamily_SSF81660	superfamily_SSF81653,HMMPfam_E1-E2_ATPase,superfamily_SSF56784,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Hydrolase_3,PatternScan_EF_HAND_1	-	no_errors
HERC2	8924	genome.wustl.edu	36	15	26191643	26191643	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	26191643	26191643	G	A	SNP	HERC2	NM_004667	human	genbank	54_36p	-1	validated	silent	c.903	p.G301	1.000	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_Cyt-b5,superfamily_Cytochrome b5-like heme/steroid binding domain,HMMSmart_SM00706,superfamily_Galactose-binding domain-like,superfamily_RCC1/BLIP-II,HMMPfam_MIB_HERC2,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
CTDSP2	10106	genome.wustl.edu	36	12	56503724	56503724	+	Silent	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	56503724	56503724	C	T	SNP	CTDSP2	NM_005730	human	genbank	54_36p	-1	validated	silent	c.744	p.L248	1.000	superfamily_HAD-like,HMMPfam_NIF	superfamily_HAD-like,HMMPfam_NIF,HMMSmart_SM00577	-	no_errors
HIST1H3A	8350	genome.wustl.edu	36	6	26128798	26128798	+	Silent	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	26128798	26128798	C	T	SNP	HIST1H3A	NM_003529	human	genbank	54_36p	+1	reviewed	silent	c.102	p.G34	1.000	superfamily_Histone-fold,HMMSmart_SM00428	superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2	-	no_errors
USP19	10869	genome.wustl.edu	36	3	49131525	49131525	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	49131525	49131525	T	C	SNP	USP19	NM_006677	human	genbank	54_36p	-1	provisional	missense	c.58	p.T20A	1.000	NULL	superfamily_HSP20-like chaperones,HMMPfam_CS,HMMPfam_DUF1872,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,PatternScan_UCH_2_2	-	no_errors
MXRA5	25878	genome.wustl.edu	36	X	3239667	3239667	+	Splice_Site	SNP	T	T	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	3239667	3239667	T	A	SNP	MXRA5	NM_015419	human	genbank	54_36p	-1	validated	splice_site	c.6579-2	e6-2	0.987	-	-	-	no_errors
AAMP	14	genome.wustl.edu	36	2	218840495	218840495	+	Silent	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	218840495	218840495	C	T	SNP	AAMP	NM_001087	human	genbank	54_36p	-1	reviewed	silent	c.360	p.R120	1.000	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
MGAT5B	146664	genome.wustl.edu	36	17	72445737	72445737	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	72445737	72445737	C	T	SNP	MGAT5B	NM_198955	human	genbank	54_36p	+1	validated	missense	c.1528	p.R510W	1.000	NULL	NULL	-	no_errors
DNAH10	196385	genome.wustl.edu	36	12	122925814	122925814	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	122925814	122925814	G	T	SNP	DNAH10	ENST00000409039	human	ensembl	54_36p	+1	known	missense	c.7668	p.E2556D	1.000	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TSC22D4	81628	genome.wustl.edu	36	7	99902648	99902648	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	99902648	99902648	T	A	SNP	TSC22D4	NM_030935	human	genbank	54_36p	-1	provisional	missense	c.1058	p.E353V	1.000	HMMPfam_TSC22	PatternScan_TSC22,HMMPfam_TSC22	-	no_errors
PHF2	5253	genome.wustl.edu	36	9	95447756	95447756	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	95447756	95447756	G	A	SNP	PHF2	NM_005392	human	genbank	54_36p	+1	reviewed	silent	c.324	p.V108	0.058	superfamily_SSF51197	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_SSF51197,HMMSmart_JmjC,HMMPfam_JmjC	-	no_errors
AMOTL2	51421	genome.wustl.edu	36	3	135560836	135560836	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	135560836	135560836	C	T	SNP	AMOTL2	NM_016201	human	genbank	54_36p	-1	reviewed	missense	c.2083	p.A695T	0.014	NULL	NULL	-	no_errors
ADCY3	109	genome.wustl.edu	36	2	24910974	24910974	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	24910974	24910974	G	A	SNP	ADCY3	NM_004036	human	genbank	54_36p	-1	reviewed	silent	c.1851	p.D617	1.000	NULL	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
CYBB	1536	genome.wustl.edu	36	X	37524312	37524312	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	37524312	37524312	T	C	SNP	CYBB	NM_000397	human	genbank	54_36p	+1	reviewed	missense	c.38	p.F13S	1.000	NULL	HMMPfam_Ferric_reduct,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_8,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_6	-	no_errors
IQSEC2	23096	genome.wustl.edu	36	X	53284123	53284123	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	53284123	53284123	C	T	SNP	IQSEC2	NM_015075	human	genbank	54_36p	-1	validated	missense	c.2591	p.R864Q	1.000	superfamily_SSF50729,HMMSmart_PH	superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7,superfamily_SSF50729,HMMSmart_PH	-	no_errors
RRM2B	50484	genome.wustl.edu	36	8	103306341	103306341	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	103306341	103306341	A	G	SNP	RRM2B	NM_015713	human	genbank	54_36p	-1	validated	missense	c.403	p.S135P	1.000	superfamily_Ferritin-like,HMMPfam_Ribonuc_red_sm,PatternScan_RIBORED_SMALL	superfamily_Ferritin-like,HMMPfam_Ribonuc_red_sm,PatternScan_RIBORED_SMALL	-	no_errors
LOC653125	653125	genome.wustl.edu	36	15	30472336	30472336	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	30472336	30472336	A	G	SNP	LOC653125	XM_001724745	human	genbank	54_36p	-1	model	missense	c.1748	p.L583S	0.056	NULL	NULL	-	no_errors
PCDHGC3	5098	genome.wustl.edu	36	5	140836488	140836488	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140836488	140836488	G	A	SNP	PCDHGC3	NM_002588	human	genbank	54_36p	+1	reviewed	silent	c.621	p.E207	0.017	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PAPPA2	60676	genome.wustl.edu	36	1	174975500	174975500	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	174975500	174975500	G	A	SNP	PAPPA2	NM_020318	human	genbank	54_36p	+1	validated	missense	c.3914	p.R1305H	0.970	NULL	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMSmart_SM00004,HMMPfam_Notch,PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M43,PatternScan_N6_MTASE,superfamily_Complement control module/SCR domain,HMMSmart_SM00032,HMMPfam_Sushi,superfamily_Notch domain"	-	no_errors
FGD2	221472	genome.wustl.edu	36	6	37098554	37098554	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	37098554	37098554	G	A	SNP	FGD2	ENST00000394459	human	ensembl	54_36p	+1	known	missense	c.767	p.G256D	0.004	NULL	HMMPfam_PH,superfamily_SSF50729	-	no_start_codon
PRELP	5549	genome.wustl.edu	36	1	201719154	201719154	+	Silent	SNP	T	T	C			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	201719154	201719154	T	C	SNP	PRELP	NM_002725	human	genbank	54_36p	+1	reviewed	silent	c.219	p.C73	1.000	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1	-	no_errors
PRRC2B	84726	genome.wustl.edu	36	9	133330073	133330073	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	133330073	133330073	G	A	SNP	BAT2L	NM_013318	human	genbank	54_36p	+1	validated	missense	c.1507	p.V503M	0.998	NULL	HMMPfam_BAT2_N	-	no_errors
RALGPS1	9649	genome.wustl.edu	36	9	129015113	129015113	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	129015113	129015113	C	T	SNP	RALGPS1	NM_014636	human	genbank	54_36p	+1	provisional	missense	c.1516	p.H506Y	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	superfamily_Ras GEF,HMMSmart_SM00147,HMMPfam_RasGEF,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
MAN2B1	4125	genome.wustl.edu	36	19	12637564	12637564	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	12637564	12637564	T	G	SNP	MAN2B1	NM_000528	human	genbank	54_36p	-1	reviewed	missense	c.215	p.H72P	1.000	superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38	superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38,superfamily_SSF88688,HMMPfam_Alpha-mann_mid,superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C	-	no_errors
HERC2P4	440362	genome.wustl.edu	36	16	32071067	32071067	+	RNA	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	32071067	32071067	G	A	SNP	HERC2P4	NR_002827	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.793	-	-	-	pseudogene
FRG2	448831	genome.wustl.edu	36	4	191184155	191184155	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	191184155	191184155	G	A	SNP	FRG2	NM_001005217	human	genbank	54_36p	-1	provisional	missense	c.392	p.A131V	0.006	NULL	NULL	-	no_errors
BUB3	9184	genome.wustl.edu	36	10	124911770	124911770	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	124911770	124911770	G	T	SNP	BUB3	NM_004725	human	genbank	54_36p	+1	reviewed	missense	c.605	p.R202L	1.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
BAI1	575	genome.wustl.edu	36	8	143596533	143596533	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	143596533	143596533	G	A	SNP	BAI1	NM_001702	human	genbank	54_36p	+1	reviewed	silent	c.2850	p.T950	0.998	HMMPfam_7tm_2	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
CABP4	57010	genome.wustl.edu	36	11	66982498	66982498	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	66982498	66982498	G	A	SNP	CABP4	NM_145200	human	genbank	54_36p	+1	validated	silent	c.732	p.A244	0.000	superfamily_EF-hand	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
SV2B	9899	genome.wustl.edu	36	15	89628417	89628417	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	89628417	89628417	C	T	SNP	SV2B	NM_014848	human	genbank	54_36p	+1	validated	missense	c.1670	p.A557V	0.997	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	no_errors
ADAR	103	genome.wustl.edu	36	1	152840469	152840469	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	152840469	152840469	C	T	SNP	ADAR	NM_001111	human	genbank	54_36p	-1	reviewed	missense	c.1273	p.A425T	0.004	NULL	"superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00550,HMMPfam_z-alpha,superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358,HMMSmart_SM00552,HMMPfam_A_deamin"	-	no_errors
DFFA	1676	genome.wustl.edu	36	1	10445772	10445772	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	10445772	10445772	G	A	SNP	DFFA	NM_004401	human	genbank	54_36p	-1	reviewed	missense	c.713	p.A238V	0.000	HMMPfam_DFF-C,superfamily_C-terminal domain of DFF45/ICAD (DFF-C domain)	superfamily_CAD  PB1 domains,HMMPfam_CIDE-N,HMMSmart_SM00266,HMMPfam_DFF-C,superfamily_C-terminal domain of DFF45/ICAD (DFF-C domain)	-	no_errors
MEIS3	56917	genome.wustl.edu	36	19	52612324	52612324	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	52612324	52612324	G	A	SNP	MEIS3	NM_020160	human	genbank	54_36p	-1	validated	silent	c.108	p.G36	1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_LIPOCALIN	-	no_errors
TFDP1	7027	genome.wustl.edu	36	13	113338394	113338394	+	Silent	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	113338394	113338394	C	T	SNP	TFDP1	NM_007111	human	genbank	54_36p	+1	reviewed	silent	c.789	p.I263	1.000	HMMPfam_DP	HMMPfam_E2F_TDP,superfamily_SSF46785,HMMPfam_DP	-	no_errors
FRYL	285527	genome.wustl.edu	36	4	48262466	48262466	+	Splice_Site	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	48262466	48262466	C	T	SNP	FRYL	NM_015030	human	genbank	54_36p	-1	validated	splice_site	c.3170-1	e26-1	1.000	-	-	-	no_errors
DUOX2	50506	genome.wustl.edu	36	15	43188414	43188414	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	43188414	43188414	G	A	SNP	DUOX2	NM_014080	human	genbank	54_36p	-1	reviewed	silent	c.1263	p.S421	0.992	superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase	superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_Ferric_reduct,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_8,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_6	-	no_errors
HEATR7B2	133558	genome.wustl.edu	36	5	41094054	41094054	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	41094054	41094054	G	T	SNP	HEATR7B2	NM_173489	human	genbank	54_36p	-1	validated	missense	c.624	p.S208R	0.001	NULL	superfamily_ARM repeat	-	no_errors
NOTCH4	4855	genome.wustl.edu	36	6	32277080	32277080	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	32277080	32277080	G	A	SNP	NOTCH4	NM_004557	human	genbank	54_36p	-1	reviewed	nonsense	c.3931	p.Q1311*	1.000	NULL	HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00004,HMMPfam_Notch,superfamily_Notch domain,HMMPfam_NODP,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248	-	no_errors
C18orf1	753	genome.wustl.edu	36	18	13635598	13635598	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	13635598	13635598	C	T	SNP	C18orf1	NM_181481	human	genbank	54_36p	+1	validated	missense	c.863	p.A288V	0.954	NULL	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1	-	no_errors
POLR1B	84172	genome.wustl.edu	36	2	113021148	113021148	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	113021148	113021148	A	G	SNP	POLR1B	NM_019014	human	genbank	54_36p	+1	validated	missense	c.266	p.K89R	1.000	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_1	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_1,HMMPfam_RNA_pol_Rpb2_2,HMMPfam_RNA_pol_Rpb2_3,HMMPfam_RNA_pol_Rpa2_4,HMMPfam_RNA_pol_Rpb2_5,HMMPfam_RNA_pol_Rpb2_6,PatternScan_RNA_POL_BETA,HMMPfam_RNA_pol_Rpb2_7	-	no_errors
DDR1	780	genome.wustl.edu	36	6	30974020	30974020	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	30974020	30974020	C	T	SNP	DDR1	NM_013994	human	genbank	54_36p	+1	reviewed	missense	c.2426	p.A809V	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II	-	no_errors
TSSK4	283629	genome.wustl.edu	36	14	23747144	23747144	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	23747144	23747144	G	A	SNP	TSSK4	NM_174944	human	genbank	54_36p	+1	provisional	silent	c.939	p.Q313	0.257	superfamily_Protein kinase-like (PK-like)	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
MXD3	83463	genome.wustl.edu	36	5	176667246	176667246	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	176667246	176667246	G	A	SNP	MXD3	NM_031300	human	genbank	54_36p	-1	reviewed	silent	c.570	p.F190	1.000	NULL	HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179372701	179372701	+	Silent	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	179372701	179372701	C	T	SNP	TTN	NM_133379	human	genbank	54_36p	-1	reviewed	silent	c.672	p.K224	1.000	NULL	PatternScan_THIOL_PROTEASE_HIS,PatternScan_IG_MHC,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,superfamily_SSF48726	-	no_errors
GOLGA1	2800	genome.wustl.edu	36	9	126682707	126682707	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	126682707	126682707	A	G	SNP	GOLGA1	NM_002077	human	genbank	54_36p	-1	reviewed	missense	c.2227	p.S743P	1.000	NULL	superfamily_Prefoldin,HMMPfam_GRIP,HMMSmart_SM00755	-	no_errors
C6orf138	442213	genome.wustl.edu	36	6	47955334	47955334	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	47955334	47955334	T	C	SNP	C6orf138	NM_001013732	human	genbank	54_36p	-1	validated	missense	c.1154	p.H385R	1.000	HMMPfam_Patched	HMMPfam_Patched,superfamily_SSF82866	-	no_errors
SH2D4B	387694	genome.wustl.edu	36	10	82359176	82359176	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	82359176	82359176	C	A	SNP	SH2D4B	NM_207372	human	genbank	54_36p	+1	validated	missense	c.874	p.P292T	0.893	NULL	NULL	-	no_errors
IDO1	3620	genome.wustl.edu	36	8	39901996	39901996	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	39901996	39901996	G	A	SNP	IDO1	NM_002164	human	genbank	54_36p	+1	validated	missense	c.805	p.V269I	0.743	HMMPfam_IDO,PatternScan_IDO_1	HMMPfam_IDO,PatternScan_IDO_1,PatternScan_IDO_2	-	no_errors
CCDC97	90324	genome.wustl.edu	36	19	46514172	46514172	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	46514172	46514172	G	A	SNP	CCDC97	NM_052848	human	genbank	54_36p	+1	provisional	silent	c.90	p.R30	0.003	NULL	HMMPfam_DUF2052	-	no_errors
PDE1C	5137	genome.wustl.edu	36	7	32304831	32304831	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	32304831	32304831	G	A	SNP	PDE1C	ENST00000284920	human	ensembl	54_36p	-1	known	silent	c.42	p.C14	1.000	NULL	HMMPfam_PDEase_I_N,superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
SHC1	6464	genome.wustl.edu	36	1	153209476	153209476	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	153209476	153209476	C	T	SNP	SHC1	NM_183001	human	genbank	54_36p	-1	validated	missense	c.151	p.G51R	0.992	NULL	HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like,superfamily_SH2 domain	-	no_errors
PRAGMIN	157285	genome.wustl.edu	36	8	8272913	8272913	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	8272913	8272913	A	G	SNP	PRAGMIN	NM_001080826	human	genbank	54_36p	-1	validated	missense	c.416	p.V139A	0.001	NULL	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_TYR	-	no_errors
LOC400578	400578	genome.wustl.edu	36	17	16675545	16675545	+	RNA	SNP	G	G	C			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	16675545	16675545	G	C	SNP	LOC400578	XR_017543	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.038	-	-	-	no_errors
CAPN3	825	genome.wustl.edu	36	15	40467296	40467296	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	40467296	40467296	G	A	SNP	CAPN3	NM_000070	human	genbank	54_36p	+1	reviewed	silent	c.552	p.T184	0.990	superfamily_Cysteine proteinases,HMMSmart_SM00230,HMMPfam_Peptidase_C2	superfamily_Cysteine proteinases,HMMSmart_SM00230,HMMPfam_Peptidase_C2,PatternScan_THIOL_PROTEASE_CYS,HMMPfam_Calpain_III,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III),superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
PRX	57716	genome.wustl.edu	36	19	45593925	45593925	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	45593925	45593925	G	A	SNP	PRX	NM_181882	human	genbank	54_36p	-1	reviewed	missense	c.2174	p.P725L	0.003	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
KCNS2	3788	genome.wustl.edu	36	8	99510471	99510471	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	99510471	99510471	C	T	SNP	KCNS2	NM_020697	human	genbank	54_36p	+1	provisional	missense	c.1088	p.A363V	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
AKAP12	9590	genome.wustl.edu	36	6	151716542	151716542	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	151716542	151716542	G	A	SNP	AKAP12	NM_005100	human	genbank	54_36p	+1	reviewed	missense	c.5323	p.A1775T	0.045	NULL	HMMPfam_WSK,HMMPfam_RII_binding_1	-	no_errors
LOC100129543	100129543	genome.wustl.edu	36	19	23091792	23091792	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	23091792	23091792	C	A	SNP	LOC100129543	XM_001719792	human	genbank	54_36p	+1	model	missense	c.250	p.P84T	0.273	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
PJA1	64219	genome.wustl.edu	36	X	68299695	68299695	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	68299695	68299695	T	C	SNP	PJA1	NM_145119	human	genbank	54_36p	-1	validated	missense	c.112	p.T38A	0.039	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors
H6PD	9563	genome.wustl.edu	36	1	9246189	9246189	+	Silent	SNP	G	G	A	rs7653395	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	9246189	9246189	G	A	SNP	H6PD	NM_004285	human	genbank	54_36p	+1	reviewed	silent	c.1050	p.E350	1.000	superfamily_SSF55347,HMMPfam_G6PD_C	superfamily_NAD(P)-bd,HMMPfam_G6PD_N,PatternScan_G6P_DEHYDROGENASE,superfamily_SSF55347,HMMPfam_G6PD_C,superfamily_SSF100950,HMMPfam_Glucosamine_iso	-	no_errors
MCF2L	23263	genome.wustl.edu	36	13	112772434	112772434	+	Silent	SNP	G	G	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	112772434	112772434	G	A	SNP	MCF2L	NM_024979	human	genbank	54_36p	+1	validated	silent	c.936	p.Q312	0.998	superfamily_Spectrin	HMMSmart_SEC14,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,PatternScan_DH_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors
NFATC4	4776	genome.wustl.edu	36	14	23916722	23916722	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	23916722	23916722	G	T	SNP	NFATC4	NM_004554	human	genbank	54_36p	+1	reviewed	missense	c.2680	p.A894S	0.994	NULL	superfamily_p53-like transcription factors,HMMPfam_RHD,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG	-	no_errors
PPP1R12A	4659	genome.wustl.edu	36	12	78852719	78852719	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	78852719	78852719	C	T	SNP	PPP1R12A	NM_002480	human	genbank	54_36p	-1	reviewed	missense	c.124	p.A42T	1.000	superfamily_Ankyrin repeat,HMMSmart_SM00248	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
ZMIZ1	57178	genome.wustl.edu	36	10	80728249	80728249	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	80728249	80728249	C	A	SNP	ZMIZ1	NM_020338	human	genbank	54_36p	+1	validated	missense	c.1572	p.S524R	1.000	NULL	superfamily_RING/U-box,HMMPfam_zf-MIZ	-	no_errors
IL17RE	132014	genome.wustl.edu	36	3	9931278	9931278	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	9931278	9931278	C	T	SNP	IL17RE	NM_153480	human	genbank	54_36p	+1	reviewed	missense	c.1343	p.P448L	0.729	NULL	HMMPfam_SEFIR	-	no_errors
PPP1R8	5511	genome.wustl.edu	36	1	28050677	28050677	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	28050677	28050677	T	G	SNP	PPP1R8	ENST00000399118	human	ensembl	54_36p	+1	known	missense	c.638	p.I213S	0.001	NULL	NULL	-	no_errors
CASP3	836	genome.wustl.edu	36	4	185787524	185787524	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	185787524	185787524	C	T	SNP	CASP3	NM_004346	human	genbank	54_36p	-1	reviewed	missense	c.730	p.A244T	0.998	superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14	superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS	-	no_errors
NPAS2	4862	genome.wustl.edu	36	2	100973220	100973220	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	100973220	100973220	C	T	SNP	NPAS2	NM_002518	human	genbank	54_36p	+1	reviewed	missense	c.1898	p.P633L	0.535	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH,HMMSmart_PAS,HMMPfam_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC	-	no_errors
CCBL1	883	genome.wustl.edu	36	9	130635698	130635698	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	130635698	130635698	T	C	SNP	CCBL1	NM_004059	human	genbank	54_36p	-1	reviewed	missense	c.1255	p.K419E	0.998	superfamily_PLP-dependent transferases	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2	-	no_errors
TTC7A	57217	genome.wustl.edu	36	2	47154404	47154404	+	Silent	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	47154404	47154404	C	T	SNP	TTC7A	NM_020458	human	genbank	54_36p	+1	validated	silent	c.2415	p.A805	0.821	superfamily_TPR-like,HMMSmart_SM00028	superfamily_TPR-like,HMMSmart_SM00028,HMMPfam_TPR_1,HMMPfam_TPR_2	-	no_errors
MAN1B1	11253	genome.wustl.edu	36	9	139103274	139103274	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	139103274	139103274	C	T	SNP	MAN1B1	NM_016219	human	genbank	54_36p	+1	validated	missense	c.461	p.S154L	0.890	NULL	superfamily_Glyco_hydro_47,HMMPfam_Glyco_hydro_47	-	no_errors
GPR97	222487	genome.wustl.edu	36	16	56275581	56275581	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	56275581	56275581	C	A	SNP	GPR97	NM_170776	human	genbank	54_36p	+1	provisional	missense	c.1118	p.T373N	0.995	HMMPfam_7tm_2	PatternScan_G_PROTEIN_RECEP_F2_1,PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2	-	no_errors
TUBB3	10381	genome.wustl.edu	36	16	88529318	88529318	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2854-03B-01W-0728-08	TCGA-AB-2854-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	88529318	88529318	C	A	SNP	TUBB3	NM_006086	human	genbank	54_36p	+1	validated	missense	c.958	p.R320S	1.000	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_errors
