Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
SEMA4A	64218	genome.wustl.edu	36	1	154412904	154412904	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2870-03A-01W-0732-08	TCGA-AB-2870-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	154412904	154412904	A	G	SNP	SEMA4A	NM_022367	human	genbank	54_36p	+1	provisional	missense	c.1778	p.H593R	0.437	NULL	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold	-	no_errors
POLR3B	55703	genome.wustl.edu	36	12	105294314	105294314	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2870-03A-01W-0732-08	TCGA-AB-2870-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	105294314	105294314	C	T	SNP	POLR3B	NM_018082	human	genbank	54_36p	+1	provisional	missense	c.452	p.T151M	0.998	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_1	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_1,HMMPfam_RNA_pol_Rpb2_2,HMMPfam_RNA_pol_Rpb2_3,HMMPfam_RNA_pol_Rpb2_4,HMMPfam_RNA_pol_Rpb2_5,HMMPfam_RNA_pol_Rpb2_6,PatternScan_RNA_POL_BETA,HMMPfam_RNA_pol_Rpb2_7	-	no_errors
NRAS	4893	genome.wustl.edu	36	1	115058053	115058053	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2870-03A-01W-0732-08	TCGA-AB-2870-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	115058053	115058053	G	T	SNP	NRAS	NM_002524	human	genbank	54_36p	-1	reviewed	missense	c.181	p.Q61K	1.000	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
COL12A1	1303	genome.wustl.edu	36	6	75958768	75958768	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2870-03A-01W-0732-08	TCGA-AB-2870-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	75958768	75958768	G	A	SNP	COL12A1	NM_004370	human	genbank	54_36p	-1	reviewed	missense	c.214	p.L72F	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like	-	no_errors
ATG4C	84938	genome.wustl.edu	36	1	63073082	63073082	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2870-03A-01W-0732-08	TCGA-AB-2870-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	63073082	63073082	G	T	SNP	ATG4C	NM_032852	human	genbank	54_36p	+1	reviewed	missense	c.1060	p.D354Y	1.000	HMMPfam_Peptidase_C54	HMMPfam_Peptidase_C54	-	no_errors
HCN4	10021	genome.wustl.edu	36	15	71411572	71411572	+	Silent	SNP	G	G	A			TCGA-AB-2870-03A-01W-0732-08	TCGA-AB-2870-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	71411572	71411572	G	A	SNP	HCN4	NM_005477	human	genbank	54_36p	-1	reviewed	silent	c.1324	p.L442	1.000	superfamily_SSF81324,HMMPfam_Ion_trans	PatternScan_CNMP_BINDING_2,HMMPfam_Ion_trans_N,superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1	-	no_errors
SPEG	10290	genome.wustl.edu	36	2	220052132	220052132	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2870-03A-01W-0732-08	TCGA-AB-2870-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	220052132	220052132	C	T	SNP	SPEG	NM_005876	human	genbank	54_36p	+1	validated	nonsense	c.5050	p.R1684*	0.643	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Immunoglobulin	-	no_errors
LOC157740	157740	genome.wustl.edu	36	8	11179726	11179726	+	RNA	SNP	G	G	A			TCGA-AB-2870-03A-01W-0732-08	TCGA-AB-2870-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	11179726	11179726	G	A	SNP	LOC157740	XR_042031	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.001	-	-	-	no_errors
C22orf29	79680	genome.wustl.edu	36	22	18218757	18218757	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2870-03A-01W-0732-08	TCGA-AB-2870-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	18218757	18218757	C	T	SNP	C22orf29	NM_024627	human	genbank	54_36p	-1	validated	missense	c.1028	p.G343D	0.009	NULL	NULL	-	no_errors
APBA2	321	genome.wustl.edu	36	15	27186164	27186164	+	Silent	SNP	C	C	T			TCGA-AB-2870-03A-01W-0732-08	TCGA-AB-2870-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	27186164	27186164	C	T	SNP	APBA2	NM_005503	human	genbank	54_36p	+1	reviewed	silent	c.1767	p.G589	0.998	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729	-	no_errors
OR10W1	81341	genome.wustl.edu	36	11	57791808	57791808	+	Silent	SNP	G	G	A			TCGA-AB-2870-03A-01W-0732-08	TCGA-AB-2870-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	57791808	57791808	G	A	SNP	OR10W1	NM_207374	human	genbank	54_36p	-1	provisional	silent	c.99	p.N33	0.032	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
NAGPA	51172	genome.wustl.edu	36	16	5018917	5018917	+	Silent	SNP	G	G	C			TCGA-AB-2870-03A-01W-0732-08	TCGA-AB-2870-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	5018917	5018917	G	C	SNP	NAGPA	NM_016256	human	genbank	54_36p	-1	reviewed	silent	c.885	p.L295	0.994	NULL	HMMPfam_EGF_2,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
COL5A3	50509	genome.wustl.edu	36	19	9973274	9973274	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2870-03A-01W-0732-08	TCGA-AB-2870-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	9973274	9973274	C	T	SNP	COL5A3	NM_015719	human	genbank	54_36p	-1	reviewed	missense	c.1036	p.G346R	0.014	NULL	HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
CDK13	8621	genome.wustl.edu	36	7	40084183	40084183	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AB-2870-03A-01W-0732-08	TCGA-AB-2870-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	40084183	40084183	A	-	DEL	CDC2L5	NM_003718	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.2835	p.Y946fs	0.336	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
ATP2B2	491	genome.wustl.edu	36	3	10362071	10362071	+	Silent	SNP	C	C	T			TCGA-AB-2870-03A-01W-0732-08	TCGA-AB-2870-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	10362071	10362071	C	T	SNP	ATP2B2	NM_001001331	human	genbank	54_36p	-1	reviewed	silent	c.2700	p.T900	0.984	superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,HMMPfam_Hydrolase,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	no_errors
