Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
C5orf25	375484	genome.wustl.edu	36	5	175649288	175649288	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2873-03A-01W-0732-08	TCGA-AB-2873-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	175649288	175649288	C	T	SNP	C5orf25	NM_198567	human	genbank	54_36p	+1	validated	missense	c.98	p.T33I	0.324	NULL	NULL	-	no_errors
GRM6	2916	genome.wustl.edu	36	5	178345972	178345972	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2873-03A-01W-0732-08	TCGA-AB-2873-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	178345972	178345972	C	T	SNP	GRM6	NM_000843	human	genbank	54_36p	-1	reviewed	missense	c.1889	p.G630D	1.000	HMMPfam_7tm_3	superfamily_SSF53822,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors
MUC5B	727897	genome.wustl.edu	36	11	1225057	1225057	+	Silent	SNP	G	G	A			TCGA-AB-2873-03A-01W-0732-08	TCGA-AB-2873-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	1225057	1225057	G	A	SNP	MUC5B	NM_002458	human	genbank	54_36p	+1	validated	silent	c.10380	p.R3460	0.000	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25310746	25310746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2873-03A-01W-0732-08	TCGA-AB-2873-11A-01W-0732-08	C	N			C	C	Verified	Valid	Somatic		Capture				Illumina GAIIx	2	25310746	25310746	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2645	p.R882H	1	NULL	HMMPfam_PWWP;HMMPfam_DNA_methylase;superfamily_FYVE/PHD zinc finger;superfamily_S-adenosyl-L-methionine-dependent methyltransferases;superfamily_Tudor/PWWP/MBT	-	NA
MUC5B	727897	genome.wustl.edu	36	11	1227541	1227541	+	Silent	SNP	G	G	A			TCGA-AB-2873-03A-01W-0732-08	TCGA-AB-2873-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	1227541	1227541	G	A	SNP	MUC5B	NM_002458	human	genbank	54_36p	+1	validated	silent	c.12864	p.P4288	0.000	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
LOC100127925	100127925	genome.wustl.edu	36	8	144913385	144913385	+	RNA	SNP	G	G	A			TCGA-AB-2873-03A-01W-0732-08	TCGA-AB-2873-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	144913385	144913385	G	A	SNP	LOC100127925	XR_037490	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
