Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
GIGYF2	26058	genome.wustl.edu	36	2	233389924	233389925	+	Frame_Shift_Ins	INS	-	-	GGCT			TCGA-AB-2886-03A-01W-0732-08	TCGA-AB-2886-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	233389924	233389925	-	GGCT	INS	GIGYF2	NM_001103147	human	genbank	54_36p	+1	validated	frame_shift_ins	c.2371_2372	p.R792fs	0.997:1.000	NULL	superfamily_GYF,HMMPfam_GYF,HMMSmart_GYF	-	no_errors
MYO5B	4645	genome.wustl.edu	36	18	45623717	45623717	+	Silent	SNP	G	G	A			TCGA-AB-2886-03A-01W-0732-08	TCGA-AB-2886-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	45623717	45623717	G	A	SNP	MYO5B	NM_001080467	human	genbank	54_36p	-1	provisional	silent	c.4503	p.P1501	0.634	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_DIL	-	no_errors
PI4KA	5297	genome.wustl.edu	36	22	19437281	19437281	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2886-03A-01W-0732-08	TCGA-AB-2886-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	19437281	19437281	C	A	SNP	PI4KA	NM_058004	human	genbank	54_36p	-1	reviewed	missense	c.2723	p.R908L	1.000	NULL	superfamily_ARM repeat,HMMSmart_SM00145,HMMPfam_PI3Ka,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
RAD21	5885	genome.wustl.edu	36	8	117933481	117933481	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2886-03A-01W-0732-08	TCGA-AB-2886-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	117933481	117933481	C	-	DEL	RAD21	NM_006265	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1357	p.E453fs	1.000	NULL	HMMPfam_Rad21_Rec8,HMMPfam_Rad21_Rec8_N	-	no_errors
LOC644157	644157	genome.wustl.edu	36	17	41019088	41019088	+	RNA	SNP	G	G	A			TCGA-AB-2886-03A-01W-0732-08	TCGA-AB-2886-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	41019088	41019088	G	A	SNP	LOC644157	XR_017515	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.968	-	-	-	pseudogene
ITPR3	3710	genome.wustl.edu	36	6	33746445	33746445	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2886-03A-01W-0732-08	TCGA-AB-2886-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	33746445	33746445	G	A	SNP	ITPR3	NM_002224	human	genbank	54_36p	+1	validated	missense	c.2461	p.A821T	0.921	NULL	HMMPfam_Ins145_P3_rec,superfamily_MIR,HMMSmart_MIR,HMMPfam_MIR,superfamily_SSF100909,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans	-	no_errors
PKD1L2	114780	genome.wustl.edu	36	16	79748048	79748048	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2886-03A-01W-0732-08	TCGA-AB-2886-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	79748048	79748048	C	T	SNP	PKD1L2	ENST00000299598	human	ensembl	54_36p	-1	known	missense	c.4042	p.V1348M	1.000	NULL	HMMPfam_GPS,HMMSmart_SM00303,PatternScan_CHANNEL_COLICIN,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel,superfamily_C-type lectin-like	-	no_errors
LOC643563	643563	genome.wustl.edu	36	X	97531372	97531372	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2886-03A-01W-0732-08	TCGA-AB-2886-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	97531372	97531372	C	T	SNP	LOC643563	XM_926863	human	genbank	54_36p	+1	model	missense	c.209	p.S70F	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU	-	no_errors
CNTNAP5	129684	genome.wustl.edu	36	2	124891562	124891562	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2886-03A-01W-0732-08	TCGA-AB-2886-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	124891562	124891562	G	T	SNP	CNTNAP5	NM_130773	human	genbank	54_36p	+1	reviewed	missense	c.454	p.V152F	0.957	HMMPfam_F5_F8_type_C,HMMSmart_FA58C,superfamily_Gal_bind_like	HMMPfam_F5_F8_type_C,HMMSmart_FA58C,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_LamG,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen_a/b/g_C,HMMPfam_EGF,HMMSmart_EGF,superfamily_Gal_bind_like,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
CLCN1	1180	genome.wustl.edu	36	7	142739951	142739951	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2886-03A-01W-0732-08	TCGA-AB-2886-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	142739951	142739951	G	A	SNP	CLCN1	NM_000083	human	genbank	54_36p	+1	reviewed	missense	c.1264	p.E422K	1.000	superfamily_Clc chloride channel,HMMPfam_Voltage_CLC	superfamily_Clc chloride channel,HMMPfam_Voltage_CLC,superfamily_CBS-domain,HMMPfam_CBS	-	no_errors
RAD21	5885	genome.wustl.edu	36	8	117933479	117933479	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2886-03A-01W-0732-08	TCGA-AB-2886-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	117933479	117933479	C	-	DEL	RAD21	NM_006265	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1359	p.E453fs	0.960	NULL	HMMPfam_Rad21_Rec8_N,HMMPfam_Rad21_Rec8	-	no_errors
TSKS	60385	genome.wustl.edu	36	19	54935243	54935243	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2886-03A-01W-0732-08	TCGA-AB-2886-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	54935243	54935243	G	A	SNP	TSKS	NM_021733	human	genbank	54_36p	-1	reviewed	missense	c.1507	p.R503C	1.000	NULL	NULL	-	no_errors
DNAH11	8701	genome.wustl.edu	36	7	21751198	21751198	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2886-03A-01W-0732-08	TCGA-AB-2886-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	21751198	21751198	G	T	SNP	DNAH11	ENST00000328843	human	ensembl	54_36p	+1	known	missense	c.8523	p.M2841I	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,PatternScan_WD_REPEATS_1,HMMPfam_Dynein_heavy	-	no_errors
MT-CO2	0	genome.wustl.edu	36	MT	8066	8066	+	Silent	SNP	G	G	A			TCGA-AB-2886-03A-01W-0732-08	TCGA-AB-2886-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	8066	8066	G	A	SNP	MT-CO2	ENST00000361739	human	ensembl	54_36p	+1	known	silent	c.480	p.L160	NULL	PatternScan_COX2,HMMPfam_COX2,superfamily_Cupredoxins	PatternScan_COX2,HMMPfam_COX2,superfamily_Cupredoxins,HMMPfam_COX2_TM,superfamily_Cytochrome c oxidase subunit II-like transmembrane region	-	no_errors
JAK3	3718	genome.wustl.edu	36	19	17810108	17810108	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2886-03A-01W-0732-08	TCGA-AB-2886-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	17810108	17810108	C	T	SNP	JAK3	NM_000215	human	genbank	54_36p	-1	reviewed	missense	c.1533	p.M511I	0.993	superfamily_SH2 domain,superfamily_Protein kinase-like (PK-like)	HMMSmart_SM00295,superfamily_SH2 domain,HMMSmart_SM00252,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_THIOL_PROTEASE_HIS,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
RAP1B	5908	genome.wustl.edu	36	12	67328806	67328806	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2886-03A-01W-0732-08	TCGA-AB-2886-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	67328806	67328806	G	A	SNP	RAP1B	NM_001010942	human	genbank	54_36p	+1	validated	missense	c.35	p.G12E	1.000	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	-	no_errors
C17orf97	400566	genome.wustl.edu	36	17	263333	263333	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2886-03A-01W-0732-08	TCGA-AB-2886-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	263333	263333	G	C	SNP	C17orf97	NM_001013672	human	genbank	54_36p	+1	validated	missense	c.383	p.R128P	0.000	NULL	NULL	-	no_errors
LMAN1L	79748	genome.wustl.edu	36	15	72900503	72900503	+	Silent	SNP	C	C	A			TCGA-AB-2886-03A-01W-0732-08	TCGA-AB-2886-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	72900503	72900503	C	A	SNP	LMAN1L	NM_021819	human	genbank	54_36p	+1	validated	silent	c.942	p.G314	0.762	NULL	HMMPfam_Lectin_leg-like,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors
