Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
CYP4F12	66002	genome.wustl.edu	36	19	15655469	15655469	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2890-03A-01W-0732-08	TCGA-AB-2890-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	15655469	15655469	C	T	SNP	CYP4F12	NM_023944	human	genbank	54_36p	+1	reviewed	missense	c.814	p.R272W	1.000	superfamily_Cytochrome P450,HMMPfam_p450	superfamily_Cytochrome P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	-	no_errors
CNOT6L	246175	genome.wustl.edu	36	4	78866545	78866545	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2890-03A-01W-0732-08	TCGA-AB-2890-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	78866545	78866545	C	T	SNP	CNOT6L	NM_144571	human	genbank	54_36p	-1	validated	missense	c.1255	p.V419I	1.000	superfamily_DNase I-like,HMMPfam_Exo_endo_phos	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,superfamily_DNase I-like,HMMPfam_Exo_endo_phos	-	no_errors
CROCC	9696	genome.wustl.edu	36	1	17123550	17123550	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2890-03A-01W-0732-08	TCGA-AB-2890-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	17123550	17123550	G	A	SNP	CROCC	NM_014675	human	genbank	54_36p	+1	validated	missense	c.340	p.V114I	0.989	NULL	superfamily_Prefoldin	-	no_errors
PTPRD	5789	genome.wustl.edu	36	9	8366658	8366658	+	Silent	SNP	A	A	G			TCGA-AB-2890-03A-01W-0732-08	TCGA-AB-2890-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	8366658	8366658	A	G	SNP	PTPRD	NM_002839	human	genbank	54_36p	-1	reviewed	silent	c.4455	p.L1485	0.168	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
EGFLAM	133584	genome.wustl.edu	36	5	38487301	38487301	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2890-03A-01W-0732-08	TCGA-AB-2890-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	38487301	38487301	G	A	SNP	EGFLAM	NM_152403	human	genbank	54_36p	+1	validated	missense	c.2671	p.G891R	1.000	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2	HMMSmart_LamG,HMMPfam_fn3,HMMSmart_FN3,HMMPfam_EGF,HMMSmart_EGF,superfamily_FN_III-like,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
LRIT1	26103	genome.wustl.edu	36	10	85981730	85981730	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2890-03A-01W-0732-08	TCGA-AB-2890-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	85981730	85981730	C	T	SNP	LRIT1	NM_015613	human	genbank	54_36p	-1	validated	missense	c.1805	p.R602H	0.670	NULL	HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_FN3,HMMPfam_fn3,superfamily_FN_III-like	-	no_errors
RUNX1	861	genome.wustl.edu	36	21	35153653	35153653	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2890-03A-01W-0732-08	TCGA-AB-2890-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	35153653	35153653	G	A	SNP	RUNX1	NM_001754	human	genbank	54_36p	-1	reviewed	nonsense	c.601	p.R201*	1.000	superfamily_p53-like transcription factors,HMMPfam_Runt	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
ADNP	23394	genome.wustl.edu	36	20	48942512	48942512	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2890-03A-01W-0732-08	TCGA-AB-2890-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	48942512	48942512	T	G	SNP	ADNP	NM_015339	human	genbank	54_36p	-1	reviewed	missense	c.2146	p.K716Q	1.000	NULL	PatternScan_HOMEOBOX_1,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	-	no_errors
ADAP1	11033	genome.wustl.edu	36	7	906274	906274	+	Silent	SNP	C	C	T			TCGA-AB-2890-03A-01W-0732-08	TCGA-AB-2890-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	906274	906274	C	T	SNP	ADAP1	NM_006869	human	genbank	54_36p	-1	validated	silent	c.786	p.T262	0.861	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	superfamily_ArfGAP,HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_SSF50729,HMMSmart_PH,HMMPfam_PH	-	no_errors
ENSG00000215512	0	genome.wustl.edu	36	18	15313276	15313276	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2890-03A-01W-0732-08	TCGA-AB-2890-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	15313276	15313276	A	T	SNP	ENSG00000215512	ENST00000333851	human	ensembl	54_36p	-1	known	missense	c.377	p.I126N	0.012	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	PatternScan_ASP_PROTEASE,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_start_codon
