Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
FKTN	2218	genome.wustl.edu	36	9	107403451	107403451	+	Splice_Site	SNP	G	G	T			TCGA-AB-2907-03A-01D-0739-09	TCGA-AB-2907-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	9	107403451	107403451	G	T	SNP	FKTN	NM_001079802	human	genbank	54_36p	+1	reviewed	splice_site	c.369+1	e3+1	1.000	-	-	-	no_errors
RBM46	166863	genome.wustl.edu	36	4	155968543	155968543	+	Silent	SNP	C	C	T			TCGA-AB-2907-03A-01D-0739-09	TCGA-AB-2907-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	4	155968543	155968543	C	T	SNP	RBM46	NM_144979	human	genbank	54_36p	+1	validated	silent	c.1476	p.S492	1.000	NULL	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	-	no_errors
PCDHB1	29930	genome.wustl.edu	36	5	140413003	140413003	+	Silent	SNP	C	C	A			TCGA-AB-2907-03A-01D-0739-09	TCGA-AB-2907-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	140413003	140413003	C	A	SNP	PCDHB1	NM_013340	human	genbank	54_36p	+1	reviewed	silent	c.1764	p.T588	1.000	HMMPfam_Cadherin,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
FRZB	2487	genome.wustl.edu	36	2	183439321	183439321	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2907-03A-01D-0739-09	TCGA-AB-2907-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	183439321	183439321	T	C	SNP	FRZB	NM_001463	human	genbank	54_36p	-1	validated	missense	c.205	p.I69V	1.000	superfamily_Frizzled cysteine-rich domain,HMMPfam_Fz,HMMSmart_SM00063	superfamily_Frizzled cysteine-rich domain,superfamily_TIMP-like,HMMPfam_NTR,HMMSmart_SM00643,HMMPfam_Fz,HMMSmart_SM00063	-	no_errors
IDH2	3418	genome.wustl.edu	36	15	88432938	88432938	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2907-03A-01D-0739-09	TCGA-AB-2907-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	15	88432938	88432938	C	T	SNP	IDH2	NM_002168	human	genbank	54_36p	-1	reviewed	missense	c.419	p.R140Q	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179355792	179355792	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2907-03A-01D-0739-09	TCGA-AB-2907-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	179355792	179355792	T	C	SNP	TTN	NM_133379	human	genbank	54_36p	-1	reviewed	missense	c.3086	p.Y1029C	1.000	HMMPfam_I-set,superfamily_SSF48726	PatternScan_THIOL_PROTEASE_HIS,PatternScan_IG_MHC,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,superfamily_SSF48726	-	no_errors
ZNF324B	388569	genome.wustl.edu	36	19	63659414	63659414	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2907-03A-01D-0739-09	TCGA-AB-2907-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	63659414	63659414	G	A	SNP	ZNF324B	NM_207395	human	genbank	54_36p	+1	validated	missense	c.1291	p.G431S	0.719	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
GDF10	2662	genome.wustl.edu	36	10	48049363	48049363	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2907-03A-01D-0739-09	TCGA-AB-2907-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	10	48049363	48049363	G	A	SNP	GDF10	NM_004962	human	genbank	54_36p	-1	reviewed	missense	c.529	p.L177F	0.005	NULL	HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1,superfamily_Cystine-knot cytokines	-	no_errors
ZNF236	7776	genome.wustl.edu	36	18	72709732	72709732	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2907-03A-01D-0739-09	TCGA-AB-2907-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	18	72709732	72709732	C	G	SNP	ZNF236	NM_007345	human	genbank	54_36p	+1	validated	missense	c.461	p.A154G	0.953	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ASXL1	171023	genome.wustl.edu	36	20	30488419	30488419	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2907-03A-01D-0739-09	TCGA-AB-2907-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	20	30488419	30488419	C	T	SNP	ASXL1	NM_015338	human	genbank	54_36p	+1	reviewed	nonsense	c.4243	p.R1415*	1.000	NULL	NULL	-	no_errors
RUNX1	861	genome.wustl.edu	36	21	35153747	35153747	+	Splice_Site	SNP	T	T	G			TCGA-AB-2907-03A-01D-0739-09	TCGA-AB-2907-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	21	35153747	35153747	T	G	SNP	RUNX1	NM_001754	human	genbank	54_36p	-1	reviewed	splice_site	c.509-2	e5-2	1.000	-	-	-	no_errors
WLS	79971	genome.wustl.edu	36	1	68432309	68432309	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2907-03A-01D-0739-09	TCGA-AB-2907-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	68432309	68432309	G	C	SNP	GPR177	NM_001002292	human	genbank	54_36p	-1	validated	missense	c.290	p.P97R	0.975	NULL	HMMPfam_DUF1171	-	no_errors
ALS2CR11	151254	genome.wustl.edu	36	2	202109171	202109171	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2907-03A-01D-0739-09	TCGA-AB-2907-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	202109171	202109171	C	T	SNP	ALS2CR11	NM_152525	human	genbank	54_36p	-1	validated	missense	c.1324	p.V442M	0.000	NULL	NULL	-	no_errors
UQCR10	29796	genome.wustl.edu	36	22	28493401	28493401	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2907-03A-01D-0739-09	TCGA-AB-2907-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	22	28493401	28493401	C	A	SNP	UCRC	NM_013387	human	genbank	54_36p	+1	validated	missense	c.14	p.T5K	0.003	superfamily_Ubiquinol_cytC_Reductase_QCR9	HMMPfam_UCR_UQCRX_QCR9,superfamily_Ubiquinol_cytC_Reductase_QCR9	-	no_errors
CLVS2	134829	genome.wustl.edu	36	6	123426552	123426552	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2907-03A-01D-0739-09	TCGA-AB-2907-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	123426552	123426552	C	T	SNP	RLBP1L2	NM_001010852	human	genbank	54_36p	+1	provisional	missense	c.931	p.R311C	1.000	NULL	HMMPfam_CRAL_TRIO,HMMSmart_SM00516,superfamily_CRAL/TRIO domain,PatternScan_SUGAR_TRANSPORT_1,HMMPfam_CRAL_TRIO_N,superfamily_CRAL/TRIO N-terminal domain	-	no_errors
RCAN2	10231	genome.wustl.edu	36	6	46298840	46298840	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2907-03A-01D-0739-09	TCGA-AB-2907-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	46298840	46298840	G	C	SNP	RCAN2	NM_005822	human	genbank	54_36p	-1	validated	missense	c.591	p.N197K	1.000	NULL	HMMPfam_Calcipressin	-	no_errors
LOC100128081	100128081	genome.wustl.edu	36	7	28246653	28246653	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2907-03A-01D-0739-09	TCGA-AB-2907-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	7	28246653	28246653	G	A	SNP	LOC100128081	XM_001717474	human	genbank	54_36p	+1	model	missense	c.211	p.V71I	0.000	NULL	NULL	-	no_errors
