Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
SERPINB4	6318	genome.wustl.edu	36	18	59456078	59456078	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	59456078	59456078	G	A	SNP	SERPINB4	NM_002974	human	genbank	54_36p	-1	validated	missense	c.1028	p.A343V	1.000	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN,PatternScan_SERPIN	-	no_errors
PTPRJ	5795	genome.wustl.edu	36	11	48115300	48115300	+	Silent	SNP	C	C	T			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	48115300	48115300	C	T	SNP	PTPRJ	NM_002843	human	genbank	54_36p	+1	reviewed	silent	c.2043	p.D681	0.000	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	HMMSmart_FN3,HMMPfam_fn3,superfamily_FN_III-like,superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
KIF1C	10749	genome.wustl.edu	36	17	4846516	4846516	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	4846516	4846516	C	T	SNP	KIF1C	NM_006612	human	genbank	54_36p	+1	provisional	nonsense	c.463	p.R155*	0.997	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA	-	no_errors
MPDZ	8777	genome.wustl.edu	36	9	13099019	13099019	+	Silent	SNP	T	T	C			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	13099019	13099019	T	C	SNP	MPDZ	NM_003829	human	genbank	54_36p	-1	validated	silent	c.5895	p.P1965	0.997	superfamily_PDZ domain-like,HMMPfam_PDZ	HMMPfam_L27_2,superfamily_L27 domain,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
LOC388996	388996	genome.wustl.edu	36	2	91141572	91141580	+	RNA	DEL	GATGCTGTG	GATGCTGTG	-			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	GATGCTGTG	GATGCTGTG			GATGCTGTG	GATGCTGTG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	91141572	91141580	GATGCTGTG	-	DEL	LOC388996	XR_017571	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.999:0.996:0.997:0.997:0.997:1.000:0.999:1.000:1.000	-	-	-	pseudogene
LOC100131104	100131104	genome.wustl.edu	36	7	7988269	7988269	+	RNA	DEL	A	A	-			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	7988269	7988269	A	-	DEL	LOC100131104	XR_038784	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.014	-	-	-	pseudogene
ZFC3H1	196441	genome.wustl.edu	36	12	70316623	70316623	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	70316623	70316623	T	C	SNP	ZFC3H1	NM_144982	human	genbank	54_36p	-1	validated	missense	c.2014	p.I672V	0.832	NULL	HMMPfam_zf-C3H1,superfamily_Protein prenylyltransferase,HMMSmart_SM00386	-	no_errors
PRDM12	59335	genome.wustl.edu	36	9	132533522	132533523	+	Splice_Site	DEL	GT	GT	-			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	GT	GT			GT	GT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	132533522	132533523	GT	-	DEL	PRDM12	NM_021619	human	genbank	54_36p	+1	validated	splice_site_del	c.570+1_570+1	e3+1	1.000:0.998	-	-	-	no_errors
SYNGAP1	8831	genome.wustl.edu	36	6	33499266	33499266	+	Silent	SNP	C	C	T			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	33499266	33499266	C	T	SNP	SYNGAP1	NM_006772	human	genbank	54_36p	+1	validated	silent	c.57	p.Y19	1.000	HMMSmart_SM00233	HMMSmart_SM00233,superfamily_PH domain-like,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1	-	no_errors
ISLR	3671	genome.wustl.edu	36	15	72254944	72254944	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	72254944	72254944	C	T	SNP	ISLR	NM_005545	human	genbank	54_36p	+1	validated	missense	c.692	p.A231V	0.299	superfamily_SSF52058,superfamily_SSF48726	HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	-	no_errors
DLC1	10395	genome.wustl.edu	36	8	13401792	13401792	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	13401792	13401792	G	A	SNP	DLC1	NM_182643	human	genbank	54_36p	-1	reviewed	missense	c.160	p.R54C	0.992	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_START,HMMSmart_SM00234,superfamily_GTPase activation domain GAP,HMMPfam_SAM_2,superfamily_Bet v1-like	-	no_errors
LPPR4	9890	genome.wustl.edu	36	1	99544957	99544957	+	Missense_Mutation	SNP	G	G	A	rs73152828	byCluster;byFrequency;by1000genomes	TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	99544957	99544957	G	A	SNP	LPPR4	NM_014839	human	genbank	54_36p	+1	reviewed	missense	c.2095	p.G699R	1.000	NULL	superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase,HMMPfam_PAP2,HMMSmart_SM00014	-	no_errors
PCDHB9	56127	genome.wustl.edu	36	5	140548524	140548524	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140548524	140548524	C	T	SNP	PCDHB9	NM_019119	human	genbank	54_36p	+1	reviewed	missense	c.1448	p.T483M	0.966	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin-like,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_SM00112	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
DYNC1I1	1780	genome.wustl.edu	36	7	95502931	95502931	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	95502931	95502931	C	T	SNP	DYNC1I1	NM_004411	human	genbank	54_36p	+1	validated	missense	c.1346	p.T449M	0.140	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
GRB10	2887	genome.wustl.edu	36	7	50641535	50641535	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	50641535	50641535	G	A	SNP	GRB10	NM_005311	human	genbank	54_36p	-1	reviewed	missense	c.1265	p.T422M	0.292	NULL	HMMPfam_RA,HMMSmart_SM00314,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_BPS,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors
STRN	6801	genome.wustl.edu	36	2	36958646	36958648	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	AGA	AGA			AGA	AGA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	36958646	36958648	AGA	-	DEL	STRN	NM_003162	human	genbank	54_36p	-1	validated	in_frame_del	c.1215_1213	p.S405in_frame_del	0.677:0.997:1.000	NULL	HMMPfam_Striatin,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
HIST3H3	8290	genome.wustl.edu	36	1	226679386	226679386	+	Silent	SNP	C	C	T			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	226679386	226679386	C	T	SNP	HIST3H3	NM_003493	human	genbank	54_36p	-1	reviewed	silent	c.264	p.S88	0.986	superfamily_Histone-fold,HMMSmart_SM00428,HMMPfam_Histone	superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone	-	no_errors
SORCS3	22986	genome.wustl.edu	36	10	106792824	106792824	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	106792824	106792824	G	C	SNP	SORCS3	NM_014978	human	genbank	54_36p	+1	reviewed	missense	c.976	p.G326R	1.000	superfamily_SSF110296,HMMSmart_VPS10	superfamily_SSF110296,HMMSmart_VPS10,HMMPfam_PKD,superfamily_PKD	-	no_errors
PTPN11	5781	genome.wustl.edu	36	12	111372582	111372582	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	111372582	111372582	C	T	SNP	PTPN11	NM_002834	human	genbank	54_36p	+1	reviewed	missense	c.215	p.A72V	1.000	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_SH2,HMMSmart_SM00252,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II,superfamily_SH2 domain	-	no_errors
MUC5B	727897	genome.wustl.edu	36	11	1227541	1227541	+	Silent	SNP	G	G	A			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	1227541	1227541	G	A	SNP	MUC5B	NM_002458	human	genbank	54_36p	+1	validated	silent	c.12864	p.P4288	0.000	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
CPXM2	119587	genome.wustl.edu	36	10	125516573	125516573	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	125516573	125516573	A	-	DEL	CPXM2	NM_198148	human	genbank	54_36p	-1	validated	frame_shift_del	c.1385	p.L462fs	0.996	superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14,HMMSmart_SM00631	superfamily_Galactose-binding domain-like,HMMSmart_SM00231,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,HMMSmart_SM00631,superfamily_Carboxypeptidase regulatory domain	-	no_errors
ADAMTS18	170692	genome.wustl.edu	36	16	75911281	75911281	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	75911281	75911281	G	A	SNP	ADAMTS18	NM_199355	human	genbank	54_36p	-1	reviewed	missense	c.2498	p.A833V	0.998	HMMPfam_ADAM_spacer1	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	-	no_errors
THOC5	8563	genome.wustl.edu	36	22	28269470	28269470	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	28269470	28269470	A	C	SNP	THOC5	NM_001002877	human	genbank	54_36p	-1	validated	missense	c.302	p.L101R	1.000	HMMPfam_FimP	HMMPfam_FimP	-	no_errors
LAS1L	81887	genome.wustl.edu	36	X	64666340	64666340	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	64666340	64666340	C	T	SNP	LAS1L	NM_031206	human	genbank	54_36p	-1	provisional	missense	c.658	p.D220N	0.442	NULL	HMMPfam_Las1	-	no_errors
HTR3E	285242	genome.wustl.edu	36	3	185307044	185307044	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	185307044	185307044	G	A	SNP	HTR3E	NM_182589	human	genbank	54_36p	+1	reviewed	missense	c.1285	p.E429K	0.001	superfamily_Neu_channel_TM	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
KIAA1267	284058	genome.wustl.edu	36	17	41604391	41604392	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	41604391	41604392	-	G	INS	KIAA1267	NM_015443	human	genbank	54_36p	-1	validated	frame_shift_ins	c.896_895	p.R299fs	1.000:1.000	NULL	NULL	-	no_errors
DRD2	1813	genome.wustl.edu	36	11	112792868	112792868	+	Silent	SNP	G	G	A			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	112792868	112792868	G	A	SNP	DRD2	NM_000795	human	genbank	54_36p	-1	reviewed	silent	c.459	p.T153	0.950	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OR52D1	390066	genome.wustl.edu	36	11	5467416	5467416	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	5467416	5467416	G	T	SNP	OR52D1	NM_001005163	human	genbank	54_36p	+1	provisional	nonsense	c.904	p.E302*	0.986	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
C9orf86	55684	genome.wustl.edu	36	9	138854454	138854456	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-AB-2914-03A-01W-0732-08	TCGA-AB-2914-11A-01W-0732-08	AGA	AGA			AGA	AGA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	138854454	138854456	AGA	-	DEL	C9orf86	NM_024718	human	genbank	54_36p	+1	validated	in_frame_del	c.1829_1831	p.K614in_frame_del	0.998:0.999:1.000	NULL	HMMSmart_SM00175,HMMPfam_Miro,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
