Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
MUC16	94025	genome.wustl.edu	36	19	8921044	8921044	+	Silent	SNP	G	G	A			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	8921044	8921044	G	A	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	silent	c.27402	p.S9134	0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
TCEAL1	9338	genome.wustl.edu	36	X	102771563	102771563	+	Silent	SNP	G	G	A			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	102771563	102771563	G	A	SNP	TCEAL1	NM_001006639	human	genbank	54_36p	+1	reviewed	silent	c.63	p.E21	0.807	HMMPfam_TFA	HMMPfam_TFA	-	no_errors
FLG	2312	genome.wustl.edu	36	1	150545333	150545333	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	150545333	150545333	T	A	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	missense	c.8653	p.R2885W	0.000	HMMPfam_Filaggrin	PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors
MAP2	4133	genome.wustl.edu	36	2	210269249	210269249	+	Silent	SNP	C	C	T			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	210269249	210269249	C	T	SNP	MAP2	NM_002374	human	genbank	54_36p	+1	reviewed	silent	c.4110	p.D1370	0.697	HMMPfam_MAP2_projctn	HMMPfam_Tubulin-binding,PatternScan_TAU_MAP,HMMPfam_MAP2_projctn,HMMPfam_RII_binding_1	-	no_errors
HMCN1	83872	genome.wustl.edu	36	1	184276815	184276815	+	Silent	SNP	C	C	T			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	184276815	184276815	C	T	SNP	HMCN1	NM_031935	human	genbank	54_36p	+1	reviewed	silent	c.6228	p.S2076	1.000	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	PatternScan_ASX_HYDROXYL,PatternScan_CECROPIN,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00179,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_I-set,HMMPfam_ig,PatternScan_EGF_CA,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_EGF/Laminin	-	no_errors
ZNF648	127665	genome.wustl.edu	36	1	180293709	180293709	+	Silent	SNP	A	A	C			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	180293709	180293709	A	C	SNP	ZNF648	NM_001009992	human	genbank	54_36p	-1	provisional	silent	c.60	p.T20	0.151	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LOC728448	728448	genome.wustl.edu	36	1	39792607	39792607	+	Splice_Site	SNP	C	C	A			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	39792607	39792607	C	A	SNP	LOC728448	NR_003929	human	genbank	54_36p	-1	validated	splice_site	c.NULL	NULL	1.000	-	-	-	pseudogene
VWA3B	200403	genome.wustl.edu	36	2	98177383	98177384	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	98177383	98177384	-	A	INS	VWA3B	NM_144992	human	genbank	54_36p	+1	provisional	frame_shift_ins	c.1733_1734	p.I580fs	0.454:0.255	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA	-	no_errors
NAA15	80155	genome.wustl.edu	36	4	140490147	140490147	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	140490147	140490147	G	A	SNP	NARG1	NM_057175	human	genbank	54_36p	+1	validated	nonsense	c.773	p.W258*	1.000	superfamily_TPR-like	superfamily_TPR-like,HMMSmart_SM00028,HMMPfam_TPR_2	-	no_errors
TLE6	79816	genome.wustl.edu	36	19	2940633	2940633	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	2940633	2940633	C	G	SNP	TLE6	NM_024760	human	genbank	54_36p	+1	validated	missense	c.725	p.A242G	0.999	superfamily_WD40_like	PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40	-	no_errors
GSTCD	79807	genome.wustl.edu	36	4	106858234	106858234	+	Silent	SNP	G	G	A			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	106858234	106858234	G	A	SNP	GSTCD	NM_001031720	human	genbank	54_36p	+1	validated	silent	c.15	p.K5	0.511	NULL	superfamily_Glutathione S-transferase (GST) C-terminal domain,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
NR2E1	7101	genome.wustl.edu	36	6	108608256	108608256	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	108608256	108608256	G	T	SNP	NR2E1	NM_003269	human	genbank	54_36p	+1	validated	missense	c.679	p.V227F	1.000	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
LOC391811	391811	genome.wustl.edu	36	5	92629616	92629616	+	RNA	SNP	G	G	T			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	92629616	92629616	G	T	SNP	LOC391811	XR_016127	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.999	-	-	-	pseudogene
LOC645173	645173	genome.wustl.edu	36	17	49189919	49189919	+	RNA	SNP	G	G	A			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	49189919	49189919	G	A	SNP	LOC645173	XR_017590	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
GRM5	2915	genome.wustl.edu	36	11	87882234	87882234	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	87882234	87882234	T	C	SNP	GRM5	NM_000842	human	genbank	54_36p	-1	reviewed	missense	c.2717	p.N906S	1.000	NULL	superfamily_SSF53822,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3,HMMPfam_GluR_Homer-bdg	-	no_errors
FAM86A	196483	genome.wustl.edu	36	16	5080137	5080137	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	5080137	5080137	C	T	SNP	FAM86A	NM_201400	human	genbank	54_36p	-1	validated	missense	c.691	p.A231T	0.423	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_16	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_16	-	no_errors
TXNDC6	347736	genome.wustl.edu	36	3	139519691	139519691	+	Silent	SNP	G	G	A			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	139519691	139519691	G	A	SNP	TXNDC6	NM_178130	human	genbank	54_36p	-1	provisional	silent	c.190	p.L64	1.000	superfamily_Thiordxn-like_fd	superfamily_Thiordxn-like_fd,PatternScan_THIOREDOXIN_1,HMMPfam_NDK,superfamily_NDK,HMMSmart_NDK	-	no_errors
C9orf91	203197	genome.wustl.edu	36	9	116435895	116435895	+	Silent	SNP	G	G	A			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	116435895	116435895	G	A	SNP	C9orf91	NM_153045	human	genbank	54_36p	+1	validated	silent	c.501	p.L167	0.985	NULL	NULL	-	no_errors
ARHGEF10L	55160	genome.wustl.edu	36	1	17820946	17820946	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	17820946	17820946	G	A	SNP	ARHGEF10L	NM_018125	human	genbank	54_36p	+1	validated	missense	c.943	p.V315M	1.000	superfamily_DBL homology domain (DH-domain)	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,superfamily_WD40 repeat-like	-	no_errors
LOC152845	152845	genome.wustl.edu	36	4	85384914	85384914	+	RNA	SNP	C	C	T			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	85384914	85384914	C	T	SNP	LOC152845	XR_038721	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
GALNTL4	374378	genome.wustl.edu	36	11	11271283	11271283	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	11271283	11271283	C	T	SNP	GALNTL4	NM_198516	human	genbank	54_36p	-1	validated	missense	c.1546	p.V516M	1.000	superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458	-	no_errors
EPHA7	2045	genome.wustl.edu	36	6	94023922	94023922	+	Silent	SNP	T	T	C			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	94023922	94023922	T	C	SNP	EPHA7	NM_004440	human	genbank	54_36p	-1	reviewed	silent	c.2151	p.G717	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,superfamily_Growth factor receptor domain,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
WNK3	65267	genome.wustl.edu	36	X	54351093	54351093	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	54351093	54351093	C	T	SNP	WNK3	NM_020922	human	genbank	54_36p	-1	validated	missense	c.1076	p.R359Q	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors
C3orf67	200844	genome.wustl.edu	36	3	58767162	58767162	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	58767162	58767162	G	A	SNP	C3orf67	NM_198463	human	genbank	54_36p	-1	predicted	missense	c.1483	p.R495W	0.973	NULL	NULL	-	no_errors
SSSCA1	10534	genome.wustl.edu	36	11	65095649	65095651	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	CCT	CCT			CCT	CCT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	65095649	65095651	CCT	-	DEL	SSSCA1	NM_006396	human	genbank	54_36p	+1	provisional	in_frame_del	c.468_470	p.L158in_frame_del	0.997:1.000:1.000	NULL	HMMPfam_Auto_anti-p27	-	no_errors
DOT1L	84444	genome.wustl.edu	36	19	2167684	2167684	+	Silent	SNP	G	G	C			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	2167684	2167684	G	C	SNP	DOT1L	NM_032482	human	genbank	54_36p	+1	validated	silent	c.2328	p.P776	0.759	NULL	superfamily_SSF53335,HMMPfam_DOT1,HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors
WDR35	57539	genome.wustl.edu	36	2	20017100	20017100	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	20017100	20017100	C	T	SNP	WDR35	NM_001006657	human	genbank	54_36p	-1	reviewed	missense	c.1409	p.R470Q	0.996	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
AIFM2	84883	genome.wustl.edu	36	10	71553248	71553248	+	Silent	SNP	C	C	A			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	71553248	71553248	C	A	SNP	AIFM2	NM_032797	human	genbank	54_36p	-1	reviewed	silent	c.213	p.V71	0.972	superfamily_FAD/NAD(P)-binding domain,HMMPfam_Pyr_redox_2	superfamily_FAD/NAD(P)-binding domain,HMMPfam_Pyr_redox_2	-	no_errors
SENP6	26054	genome.wustl.edu	36	6	76469116	76469116	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	76469116	76469116	G	T	SNP	SENP6	NM_015571	human	genbank	54_36p	+1	validated	missense	c.2324	p.G775V	1.000	HMMPfam_Peptidase_C48,superfamily_Cysteine proteinases	HMMPfam_Peptidase_C48,superfamily_Cysteine proteinases	-	no_errors
LOC152845	152845	genome.wustl.edu	36	4	85384395	85384395	+	RNA	SNP	G	G	A			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	85384395	85384395	G	A	SNP	LOC152845	XR_038721	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.974	-	-	-	pseudogene
SERPINB12	89777	genome.wustl.edu	36	18	59385208	59385208	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2915-03A-01W-0745-08	TCGA-AB-2915-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	59385208	59385208	G	A	SNP	SERPINB12	NM_080474	human	genbank	54_36p	+1	provisional	missense	c.1202	p.R401K	0.998	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN,PatternScan_SERPIN	-	no_errors
