Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
EHD2	30846	genome.wustl.edu	36	19	52921252	52921252	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	19	52921252	52921252	C	T	SNP	EHD2	NM_014601	human	genbank	54_36p	+1	reviewed	missense	c.874	p.R292C	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,superfamily_EF-hand,HMMSmart_SM00027,PatternScan_EF_HAND_1	-	no_errors
NFE2	4778	genome.wustl.edu	36	12	52972733	52972734	+	In_Frame_Ins	INS	-	-	CCC			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	12	52972733	52972734	-	CCC	INS	NFE2	NM_006163	human	genbank	54_36p	-1	provisional	in_frame_ins	c.814_813	p.271in_frame_insG	0.816:0.818	HMMSmart_SM00338,PatternScan_BZIP_BASIC,superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_1	HMMSmart_SM00338,PatternScan_BZIP_BASIC,superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_1	-	no_errors
NFE2	4778	genome.wustl.edu	36	12	52972732	52972733	+	Frame_Shift_Ins	INS	-	-	TT			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	12	52972732	52972733	-	TT	INS	NFE2	NM_006163	human	genbank	54_36p	-1	provisional	frame_shift_ins	c.815_814	p.R272fs	0.862:0.816	superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMSmart_SM00338,HMMPfam_bZIP_1,PatternScan_BZIP_BASIC	superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMSmart_SM00338,HMMPfam_bZIP_1,PatternScan_BZIP_BASIC	-	no_errors
SYNPO2	171024	genome.wustl.edu	36	4	120172000	120172000	+	Silent	SNP	G	G	A			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	4	120172000	120172000	G	A	SNP	SYNPO2	NM_133477	human	genbank	54_36p	+1	validated	silent	c.2622	p.Q874	0.997	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
ENSG00000211459	0	genome.wustl.edu	36	MT	651	651	+	RNA	SNP	A	A	G			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	MT	651	651	A	G	SNP	ENSG00000211459	ENST00000389680	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
CSMD1	64478	genome.wustl.edu	36	8	3211989	3211989	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	8	3211989	3211989	C	T	SNP	CSMD1	NM_033225	human	genbank	54_36p	-1	validated	missense	c.3091	p.V1031I	0.969	NULL	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
MAGI3	260425	genome.wustl.edu	36	1	113924725	113924725	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	1	113924725	113924725	G	A	SNP	MAGI3	NM_152900	human	genbank	54_36p	+1	validated	missense	c.472	p.V158M	1.000	HMMSmart_GuKc,superfamily_SSF52540,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin	superfamily_PDZ,HMMSmart_PDZ,HMMSmart_GuKc,superfamily_SSF52540,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,HMMPfam_PDZ	-	no_errors
LOC729863	729863	genome.wustl.edu	36	18	15262351	15262351	+	RNA	SNP	C	C	A			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	18	15262351	15262351	C	A	SNP	LOC729863	XR_015683	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
PLA2G2D	26279	genome.wustl.edu	36	1	20313229	20313229	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	1	20313229	20313229	G	A	SNP	PLA2G2D	NM_012400	human	genbank	54_36p	-1	provisional	missense	c.403	p.R135W	0.037	HMMSmart_PA2c,HMMPfam_Phospholip_A2_1,superfamily_PhospholipaseA2	HMMSmart_PA2c,HMMPfam_Phospholip_A2_1,superfamily_PhospholipaseA2,PatternScan_PA2_HIS,PatternScan_PA2_ASP	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27506262	27506263	+	In_Frame_Ins	INS	-	-	CATATTCTCTGAAATCAACGTATC			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	13	27506263	27506263	-	CATATTCTCTGAAATCAACGTATC	INS	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1793	p.YDL599in_frame_insIR*	0.821	superfamily_Kinase_like	superfamily_SSF48726,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
APOB	338	genome.wustl.edu	36	2	21088951	21088951	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	2	21088951	21088951	C	T	SNP	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	missense	c.4294	p.D1432N	0.542	NULL	HMMPfam_Vitellogenin_N,HMMSmart_SM00638,HMMPfam_DUF1081,HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,superfamily_Lipovitellin-phosvitin complex superhelical domain	-	no_errors
GPR128	84873	genome.wustl.edu	36	3	101856631	101856631	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	3	101856631	101856631	G	A	SNP	GPR128	NM_032787	human	genbank	54_36p	+1	provisional	missense	c.1642	p.A548T	0.890	HMMPfam_7tm_2	PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2	-	no_errors
C11orf16	56673	genome.wustl.edu	36	11	8910284	8910284	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	11	8910284	8910284	C	T	SNP	C11orf16	NM_020643	human	genbank	54_36p	-1	validated	missense	c.148	p.G50R	0.000	NULL	NULL	-	no_errors
NLRC4	58484	genome.wustl.edu	36	2	32316794	32316794	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	2	32316794	32316794	A	G	SNP	NLRC4	NM_021209	human	genbank	54_36p	-1	validated	missense	c.2432	p.I811T	0.898	superfamily_RNI-like	HMMPfam_CARD,superfamily_DEATH domain,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like	-	no_errors
GPX2	2877	genome.wustl.edu	36	14	64476280	64476280	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	14	64476280	64476280	G	C	SNP	GPX2	NM_002083	human	genbank	54_36p	-1	reviewed	missense	c.252	p.N84K	1.000	superfamily_Thioredoxin-like,HMMPfam_GSHPx	superfamily_Thioredoxin-like,HMMPfam_GSHPx,PatternScan_GLUTATHIONE_PEROXID_2	-	pseudogene
ZNF275	10838	genome.wustl.edu	36	X	152264227	152264227	+	Silent	SNP	A	A	G			TCGA-AB-2921-03A-01W-0755-09	TCGA-AB-2921-11A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	X	152264227	152264227	A	G	SNP	ZNF275	NM_001080485	human	genbank	54_36p	+1	validated	silent	c.255	p.L85	0.000	HMMSmart_SM00349	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
