Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
TTBK1	84630	genome.wustl.edu	36	6	43331348	43331348	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	43331348	43331348	G	T	SNP	TTBK1	NM_032538	human	genbank	54_36p	+1	validated	missense	c.723	p.K241N	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
PIK3CB	5291	genome.wustl.edu	36	3	139957479	139957479	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	139957479	139957479	C	T	SNP	PIK3CB	NM_006219	human	genbank	54_36p	-1	provisional	missense	c.204	p.M68I	1.000	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
CAMSAP1	157922	genome.wustl.edu	36	9	137854321	137854321	+	Silent	SNP	T	T	C			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	137854321	137854321	T	C	SNP	CAMSAP1	NM_015447	human	genbank	54_36p	-1	validated	silent	c.1173	p.P391	0.000	NULL	superfamily_PRC-barrel domain,HMMPfam_DUF1781	-	no_errors
TMEM205	374882	genome.wustl.edu	36	19	11317305	11317305	+	Splice_Site	SNP	C	C	G			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	11317305	11317305	C	G	SNP	TMEM205	ENST00000222124	human	ensembl	54_36p	-1	known	splice_site	c.1-1	e1-1	0.166	-	-	-	no_errors
SORBS2	8470	genome.wustl.edu	36	4	186781669	186781669	+	Silent	SNP	G	G	A			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	186781669	186781669	G	A	SNP	SORBS2	NM_021069	human	genbank	54_36p	-1	reviewed	silent	c.1896	p.S632	0.811	NULL	HMMPfam_Sorb,HMMSmart_SM00459,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
NRXN3	9369	genome.wustl.edu	36	14	79341275	79341275	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	79341275	79341275	A	G	SNP	NRXN3	NM_004796	human	genbank	54_36p	+1	reviewed	missense	c.2873	p.E958G	0.998	NULL	PatternScan_ASX_HYDROXYL,HMMSmart_LamG,HMMSmart_4.1m,HMMPfam_EGF,HMMSmart_EGF,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25324035	25324035	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25324035	25324035	T	-	DEL	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.943	p.M315fs	1.000	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
PRKCG	5582	genome.wustl.edu	36	19	59099782	59099782	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	59099782	59099782	C	T	SNP	PRKCG	NM_002739	human	genbank	54_36p	+1	reviewed	missense	c.1738	p.R580W	0.993	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C	-	no_errors
LOC400986	400986	genome.wustl.edu	36	2	95889367	95889367	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	95889367	95889367	G	T	SNP	LOC400986	XM_001717763	human	genbank	54_36p	-1	model	missense	c.3865	p.L1289I	0.998	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
UGT2B4	7363	genome.wustl.edu	36	4	70385659	70385659	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	70385659	70385659	G	A	SNP	UGT2B4	NM_021139	human	genbank	54_36p	-1	validated	missense	c.1166	p.P389L	1.000	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7514728	7514728	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	7514728	7514728	G	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1024	p.R342fs	0.397	HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
ZNF827	152485	genome.wustl.edu	36	4	147026748	147026748	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	147026748	147026748	G	-	DEL	ZNF827	NM_178835	human	genbank	54_36p	-1	validated	frame_shift_del	c.1279	p.Q427fs	1.000	superfamily_SSF57667	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
TUBA3C	7278	genome.wustl.edu	36	13	18649444	18649444	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	18649444	18649444	G	T	SNP	TUBA3C	NM_006001	human	genbank	54_36p	-1	reviewed	missense	c.679	p.L227I	1.000	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like	HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like	-	no_errors
CD320	51293	genome.wustl.edu	36	19	8275962	8275962	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	8275962	8275962	C	G	SNP	CD320	NM_016579	human	genbank	54_36p	-1	validated	missense	c.221	p.C74S	0.974	superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1	superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1	-	no_errors
OR8B12	219858	genome.wustl.edu	36	11	123917988	123917988	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	123917988	123917988	T	C	SNP	OR8B12	NM_001005195	human	genbank	54_36p	-1	provisional	missense	c.773	p.Y258C	0.223	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
KRTAP4-2	85291	genome.wustl.edu	36	17	36587714	36587714	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	36587714	36587714	G	A	SNP	KRTAP4-2	NM_033062	human	genbank	54_36p	-1	reviewed	missense	c.229	p.R77C	0.005	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
HDGF	3068	genome.wustl.edu	36	1	154980220	154980220	+	Silent	SNP	C	C	T			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	154980220	154980220	C	T	SNP	HDGF	NM_004494	human	genbank	54_36p	-1	reviewed	silent	c.564	p.E188	0.286	NULL	superfamily_SSF63748,HMMPfam_PWWP,HMMSmart_PWWP	-	no_errors
DLC1	10395	genome.wustl.edu	36	8	12997037	12997037	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	12997037	12997037	G	A	SNP	DLC1	NM_182643	human	genbank	54_36p	-1	reviewed	missense	c.3256	p.R1086C	1.000	superfamily_GTPase activation domain GAP	HMMPfam_SAM_2,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234	-	no_errors
VARS2	57176	genome.wustl.edu	36	6	30995886	30995886	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	30995886	30995886	G	A	SNP	VARS2	NM_020442	human	genbank	54_36p	+1	provisional	missense	c.1207	p.E403K	0.997	HMMPfam_tRNA-synt_1,superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Nucleotidylyl transferase	PatternScan_AA_TRNA_LIGASE_I,HMMPfam_tRNA-synt_1,superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1,superfamily_Nucleotidylyl transferase	-	no_errors
DUSP27	92235	genome.wustl.edu	36	1	165362022	165362024	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	GAG	GAG			GAG	GAG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	165362022	165362024	GAG	-	DEL	DUSP27	NM_001080426	human	genbank	54_36p	+1	provisional	in_frame_del	c.1030_1032	p.E347in_frame_del	0.327:0.286:0.257	NULL	PatternScan_TYR_PHOSPHATASE_1,superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc	-	no_errors
CCZ1	51622	genome.wustl.edu	36	7	5908853	5908853	+	Silent	SNP	C	C	T			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	5908853	5908853	C	T	SNP	C7orf28A	NM_015622	human	genbank	54_36p	+1	validated	silent	c.474	p.D158	1.000	HMMPfam_DUF2049	HMMPfam_DUF2049	-	no_errors
EDC4	23644	genome.wustl.edu	36	16	66469944	66469944	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	66469944	66469944	C	T	SNP	EDC4	NM_014329	human	genbank	54_36p	+1	validated	missense	c.1093	p.P365S	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
GET4	51608	genome.wustl.edu	36	7	892761	892761	+	Silent	SNP	G	G	A			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	892761	892761	G	A	SNP	C7orf20	NM_015949	human	genbank	54_36p	+1	validated	silent	c.264	p.L88	1.000	HMMPfam_DUF410	HMMPfam_DUF410	-	no_errors
LOC727842	727842	genome.wustl.edu	36	6	58554097	58554097	+	RNA	SNP	G	G	T			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	58554097	58554097	G	T	SNP	LOC727842	XR_015140	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
NPTXR	23467	genome.wustl.edu	36	22	37552615	37552615	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	37552615	37552615	C	T	SNP	NPTXR	NM_014293	human	genbank	54_36p	-1	reviewed	missense	c.934	p.A312T	0.944	HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Pentaxin	HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Pentaxin	-	no_errors
CASC4	113201	genome.wustl.edu	36	15	42482414	42482414	+	Silent	SNP	G	G	A			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	42482414	42482414	G	A	SNP	CASC4	NM_138423	human	genbank	54_36p	+1	reviewed	silent	c.1110	p.P370	1.000	NULL	NULL	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519119	7519119	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	7519119	7519119	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.536	p.H179R	0.999	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
CUL1	8454	genome.wustl.edu	36	7	148088455	148088455	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	148088455	148088455	G	T	SNP	CUL1	NM_003592	human	genbank	54_36p	+1	validated	missense	c.723	p.E241D	0.997	HMMPfam_Cullin,superfamily_Cullin repeat	"HMMPfam_Cullin,PatternScan_CULLIN_1,HMMSmart_SM00182,superfamily_Cullin homology domain,superfamily_Cullin repeat,HMMPfam_Cullin_Nedd8,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
ROBO2	6092	genome.wustl.edu	36	3	76069431	76069431	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	76069431	76069431	G	A	SNP	ROBO2	ENST00000403211	human	ensembl	54_36p	+1	known	missense	c.97	p.G33R	0.742	NULL	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_stop_codon:overly_large_intron
SIDT2	51092	genome.wustl.edu	36	11	116569108	116569108	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	116569108	116569108	A	G	SNP	SIDT2	NM_001040455	human	genbank	54_36p	+1	validated	missense	c.2135	p.N712S	1.000	NULL	NULL	-	no_errors
MYH1	4619	genome.wustl.edu	36	17	10345471	10345471	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2938-03A-01W-0732-08	TCGA-AB-2938-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	10345471	10345471	C	T	SNP	MYH1	NM_005963	human	genbank	54_36p	-1	reviewed	missense	c.3419	p.R1140H	1.000	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors
