Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
CEBPA	1050	genome.wustl.edu	36	19	38484235	38484236	+	In_Frame_Ins	INS	-	-	CCA			TCGA-AB-2940-03A-01W-0733-08	TCGA-AB-2940-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	38484235	38484236	-	CCA	INS	CEBPA	NM_004364	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.926_925	p.309in_frame_insV	1.000:1.000	HMMSmart_BRLZ,HMMPfam_bZIP_2	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2	-	no_errors
MLL3	58508	genome.wustl.edu	36	7	151505094	151505094	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2940-03A-01W-0733-08	TCGA-AB-2940-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	151505094	151505094	C	A	SNP	MLL3	NM_170606	human	genbank	54_36p	-1	reviewed	nonsense	c.8377	p.E2793*	0.943	NULL	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors
BRD4	23476	genome.wustl.edu	36	19	15210764	15210764	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2940-03A-01W-0733-08	TCGA-AB-2940-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	15210764	15210764	C	G	SNP	BRD4	NM_058243	human	genbank	54_36p	-1	reviewed	missense	c.3810	p.E1270D	1.000	NULL	superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
DENND2D	79961	genome.wustl.edu	36	1	111542858	111542858	+	Silent	SNP	C	C	T			TCGA-AB-2940-03A-01W-0733-08	TCGA-AB-2940-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	111542858	111542858	C	T	SNP	DENND2D	NM_024901	human	genbank	54_36p	-1	provisional	silent	c.273	p.E91	1.000	HMMPfam_uDENN,HMMSmart_SM00800	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801	-	no_errors
LOC727820	727820	genome.wustl.edu	36	1	142535934	142535934	+	RNA	SNP	G	G	C	rs79406648	byFrequency;by1000genomes	TCGA-AB-2940-03A-01W-0733-08	TCGA-AB-2940-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	142535934	142535934	G	C	SNP	LOC727820	XR_041980	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
PRSS36	146547	genome.wustl.edu	36	16	31067964	31067964	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2940-03A-01W-0733-08	TCGA-AB-2940-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	31067964	31067964	C	T	SNP	PRSS36	NM_173502	human	genbank	54_36p	-1	validated	missense	c.203	p.G68D	0.036	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
ENSG00000188668	0	genome.wustl.edu	36	2	159427410	159427410	+	Silent	SNP	T	T	C			TCGA-AB-2940-03A-01W-0733-08	TCGA-AB-2940-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	159427410	159427410	T	C	SNP	ENSG00000188668	ENST00000343761	human	ensembl	54_36p	+1	known	silent	c.213	p.F71	0.019	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
NRAS	4893	genome.wustl.edu	36	1	115060270	115060270	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2940-03A-01W-0733-08	TCGA-AB-2940-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	115060270	115060270	C	T	SNP	NRAS	NM_002524	human	genbank	54_36p	-1	reviewed	missense	c.35	p.G12D	1.000	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NOTCH2NL	388677	genome.wustl.edu	36	1	143920510	143920512	+	In_Frame_Del	DEL	GGC	GGC	-			TCGA-AB-2940-03A-01W-0733-08	TCGA-AB-2940-11A-01W-0732-08	GGC	GGC			GGC	GGC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	143920510	143920512	GGC	-	DEL	NOTCH2NL	ENST00000362074	human	ensembl	54_36p	+1	known	in_frame_del	c.48_50	p.A19in_frame_del	1.000:1.000:1.000	NULL	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_start_codon
ZNF442	79973	genome.wustl.edu	36	19	12321651	12321651	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2940-03A-01W-0733-08	TCGA-AB-2940-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	12321651	12321651	C	T	SNP	ZNF442	NM_030824	human	genbank	54_36p	-1	validated	missense	c.1748	p.R583H	0.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
EPPK1	83481	genome.wustl.edu	36	8	145012319	145012319	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2940-03A-01W-0733-08	TCGA-AB-2940-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	145012319	145012319	C	T	SNP	EPPK1	NM_031308	human	genbank	54_36p	-1	provisional	missense	c.7016	p.R2339Q	0.999	superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	HMMSmart_SM00250,superfamily_Plakin repeat,HMMPfam_Plectin	-	no_stop_codon:bad_bp_length_for_coding_region
NEURL4	84461	genome.wustl.edu	36	17	7169461	7169461	+	Silent	SNP	C	C	T			TCGA-AB-2940-03A-01W-0733-08	TCGA-AB-2940-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	7169461	7169461	C	T	SNP	NEURL4	NM_032442	human	genbank	54_36p	-1	validated	silent	c.1422	p.G474	1.000	NULL	HMMPfam_Neuralized,HMMSmart_SM00588	-	no_errors
