Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
FAM90A1	55138	genome.wustl.edu	36	12	8266048	8266049	+	In_Frame_Ins	INS	-	-	ACG			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	8266048	8266049	-	ACG	INS	FAM90A1	NM_018088	human	genbank	54_36p	-1	validated	in_frame_ins	c.1032_1031	p.345in_frame_insV	0.000:0.001	NULL	NULL	-	no_errors
RRP7B	91695	genome.wustl.edu	36	22	41299863	41299863	+	RNA	SNP	C	C	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	41299863	41299863	C	T	SNP	RRP7B	NR_002184	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.003	-	-	-	pseudogene
QRICH2	84074	genome.wustl.edu	36	17	71800160	71800162	+	In_Frame_Del	DEL	TGA	TGA	-			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	TGA	TGA			TGA	TGA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	71800160	71800162	TGA	-	DEL	QRICH2	NM_032134	human	genbank	54_36p	-1	provisional	in_frame_del	c.1745_1743	p.H581in_frame_del	0.012:0.018:0.017	NULL	NULL	-	no_errors
USP13	8975	genome.wustl.edu	36	3	180907482	180907482	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	180907482	180907482	T	C	SNP	USP13	NM_003940	human	genbank	54_36p	+1	validated	missense	c.544	p.W182R	1.000	NULL	HMMSmart_ZnF_UBP,HMMPfam_zf-UBP,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,HMMPfam_UBA,HMMSmart_UBA,superfamily_UBA_like,PatternScan_UCH_2_2	-	no_errors
OR52W1	120787	genome.wustl.edu	36	11	6177530	6177530	+	Silent	SNP	G	G	A			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	6177530	6177530	G	A	SNP	OR52W1	NM_001005178	human	genbank	54_36p	+1	provisional	silent	c.501	p.L167	0.925	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
CCDC59	29080	genome.wustl.edu	36	12	81276168	81276168	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	81276168	81276168	T	G	SNP	CCDC59	NM_014167	human	genbank	54_36p	-1	validated	missense	c.119	p.N40T	0.000	NULL	NULL	-	no_errors
ARPC1B	10095	genome.wustl.edu	36	7	98825503	98825503	+	Silent	SNP	C	C	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	98825503	98825503	C	T	SNP	ARPC1B	NM_005720	human	genbank	54_36p	+1	reviewed	silent	c.432	p.T144	0.998	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
RNF152	220441	genome.wustl.edu	36	18	57634567	57634567	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	57634567	57634567	A	G	SNP	RNF152	NM_173557	human	genbank	54_36p	-1	validated	missense	c.110	p.V37A	1.000	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850	HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
SERHL2	253190	genome.wustl.edu	36	22	41299948	41299948	+	Silent	SNP	G	G	C			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	41299948	41299948	G	C	SNP	SERHL2	NM_014509	human	genbank	54_36p	+1	provisional	silent	c.888	p.V296	0.469	superfamily_alpha/beta-Hydrolases	superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_1	-	no_errors
COL16A1	1307	genome.wustl.edu	36	1	31917764	31917764	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	31917764	31917764	C	T	SNP	COL16A1	ENST00000373668	human	ensembl	54_36p	-1	known	nonsense	c.2780	p.W927*	0.002	NULL	HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Collagen	-	no_errors
CRIPAK	285464	genome.wustl.edu	36	4	1379215	1379215	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	1379215	1379215	C	T	SNP	CRIPAK	NM_175918	human	genbank	54_36p	+1	validated	nonsense	c.916	p.R306*	0.206	NULL	HMMSmart_PostSET	-	no_errors
CDH23	64072	genome.wustl.edu	36	10	73242589	73242589	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	73242589	73242589	C	T	SNP	CDH23	NM_022124	human	genbank	54_36p	+1	reviewed	missense	c.9569	p.A3190V	0.998	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
TMEM2	23670	genome.wustl.edu	36	9	73537182	73537182	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	73537182	73537182	G	A	SNP	TMEM2	NM_013390	human	genbank	54_36p	-1	validated	missense	c.1468	p.R490W	1.000	NULL	HMMPfam_G8,superfamily_Pectin lyase-like	-	no_errors
PKIB	5570	genome.wustl.edu	36	6	123080792	123080792	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	123080792	123080792	C	T	SNP	PKIB	NM_032471	human	genbank	54_36p	+1	reviewed	missense	c.154	p.L52F	0.042	HMMPfam_PKI	HMMPfam_PKI	-	no_errors
COL13A1	1305	genome.wustl.edu	36	10	71360180	71360180	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	71360180	71360180	G	A	SNP	COL13A1	NM_005203	human	genbank	54_36p	+1	reviewed	missense	c.1516	p.G506R	1.000	HMMPfam_Collagen	HMMPfam_Collagen	-	no_errors
LOC642451	642451	genome.wustl.edu	36	16	11029108	11029108	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	11029108	11029108	C	T	SNP	LOC642451	XM_926336	human	genbank	54_36p	+1	model	missense	c.754	p.R252C	1.000	superfamily_Ribosomal protein L30p/L7e	PatternScan_GAPDH,HMMPfam_Ribosomal_L30,superfamily_Ribosomal protein L30p/L7e,PatternScan_RIBOSOMAL_L30	-	pseudogene
SNORD3A	780851	genome.wustl.edu	36	17	19032024	19032024	+	RNA	SNP	C	C	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	19032024	19032024	C	T	SNP	SNORD3A	ENST00000365494	human	ensembl	54_36p	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
SYNJ1	8867	genome.wustl.edu	36	21	32989378	32989378	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	32989378	32989378	T	C	SNP	SYNJ1	NM_003895	human	genbank	54_36p	-1	validated	missense	c.565	p.I189V	1.000	HMMPfam_Syja_N	HMMSmart_SM00128,HMMPfam_Syja_N,HMMPfam_Exo_endo_phos,superfamily_DNase I-like,HMMPfam_DUF1866,superfamily_RNA-binding domain RBD	-	no_errors
NBPF1	55672	genome.wustl.edu	36	1	16768173	16768173	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	16768173	16768173	T	C	SNP	NBPF1	ENST00000287968	human	ensembl	54_36p	-1	known	missense	c.763	p.M255V	0.000	HMMPfam_DUF1220	HMMPfam_DUF1220	-	no_errors
TNRC18	84629	genome.wustl.edu	36	7	62670184	62670184	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	62670184	62670184	G	A	SNP	TNRC18	XM_376618	human	genbank	54_36p	-1	model	missense	c.1855	p.R619W	1.000	NULL	NULL	-	pseudogene
ZSWIM4	65249	genome.wustl.edu	36	19	13795296	13795296	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	13795296	13795296	A	G	SNP	ZSWIM4	NM_023072	human	genbank	54_36p	+1	validated	missense	c.1846	p.M616V	1.000	NULL	HMMPfam_SWIM	-	no_errors
LOC100131134	100131134	genome.wustl.edu	36	7	128278733	128278733	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	128278733	128278733	C	T	SNP	LOC100131134	XM_001726492	human	genbank	54_36p	-1	model	missense	c.142	p.G48S	0.000	NULL	NULL	-	no_errors
ADCY4	196883	genome.wustl.edu	36	14	23873550	23873550	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	23873550	23873550	G	A	SNP	ADCY4	NM_139247	human	genbank	54_36p	-1	reviewed	missense	c.149	p.A50V	1.000	NULL	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
PCDHA12	56137	genome.wustl.edu	36	5	140235303	140235303	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140235303	140235303	T	G	SNP	PCDHA12	NM_018903	human	genbank	54_36p	+1	reviewed	missense	c.62	p.L21R	0.002	superfamily_Cadherin-like	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
ELMO3	79767	genome.wustl.edu	36	16	65790667	65790667	+	Silent	SNP	G	G	A			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	65790667	65790667	G	A	SNP	ELMO3	NM_024712	human	genbank	54_36p	+1	reviewed	silent	c.96	p.R32	0.002	NULL	HMMPfam_ELMO_CED12,superfamily_SSF50729,HMMSmart_PH	-	no_errors
TDRD10	126668	genome.wustl.edu	36	1	152783580	152783580	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	152783580	152783580	G	T	SNP	TDRD10	NM_001098475	human	genbank	54_36p	+1	validated	nonsense	c.760	p.E254*	0.000	HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT	HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_TUDOR,superfamily_RNA-binding domain RBD,superfamily_Tudor/PWWP/MBT	-	no_errors
THBS1	7057	genome.wustl.edu	36	15	37662174	37662174	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	37662174	37662174	G	A	SNP	THBS1	NM_003246	human	genbank	54_36p	+1	reviewed	missense	c.556	p.V186I	1.000	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2,superfamily_TSP type-3 repeat,HMMPfam_TSP_3,HMMPfam_TSP_C	-	no_errors
NRCAM	4897	genome.wustl.edu	36	7	107596003	107596003	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	107596003	107596003	C	T	SNP	NRCAM	NM_001037132	human	genbank	54_36p	-1	reviewed	missense	c.3268	p.G1090R	1.000	HMMPfam_fn3,superfamily_Fibronectin type III,HMMSmart_SM00060	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,PatternScan_IG_MHC,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
PTCHD2	57540	genome.wustl.edu	36	1	11498126	11498126	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	11498126	11498126	G	A	SNP	PTCHD2	NM_020780	human	genbank	54_36p	+1	validated	missense	c.1567	p.A523T	1.000	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors
RGS3	5998	genome.wustl.edu	36	9	115264195	115264195	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	115264195	115264195	G	T	SNP	RGS3	NM_144488	human	genbank	54_36p	+1	reviewed	missense	c.308	p.G103V	0.561	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_PDZ,superfamily_PDZ domain-like,HMMSmart_SM00228,superfamily_PH domain-like,superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315	-	no_errors
PDE4DIP	9659	genome.wustl.edu	36	1	143787132	143787132	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	143787132	143787132	G	A	SNP	PDE4DIP	NM_022359	human	genbank	54_36p	-1	validated	missense	c.88	p.P30S	0.091	NULL	HMMPfam_Microtub_assoc	-	no_errors
LOC728247	728247	genome.wustl.edu	36	3	199332028	199332028	+	RNA	SNP	C	C	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	199332028	199332028	C	T	SNP	LOC728247	XR_015241	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.431	-	-	-	pseudogene
MEIS1	4211	genome.wustl.edu	36	2	66652131	66652131	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	66652131	66652131	T	C	SNP	MEIS1	ENST00000398506	human	ensembl	54_36p	+1	known	missense	c.1358	p.M453T	1.000	NULL	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	-	no_errors
LOC729486	729486	genome.wustl.edu	36	16	23287	23287	+	RNA	SNP	G	G	A			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	23287	23287	G	A	SNP	LOC729486	XR_042290	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.867	-	-	-	pseudogene
NEURL4	84461	genome.wustl.edu	36	17	7165157	7165157	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	7165157	7165157	C	T	SNP	NEURL4	NM_032442	human	genbank	54_36p	-1	validated	missense	c.3358	p.G1120R	0.028	NULL	HMMPfam_Neuralized,HMMSmart_SM00588	-	no_errors
SPEG	10290	genome.wustl.edu	36	2	220051020	220051020	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	220051020	220051020	A	G	SNP	SPEG	NM_005876	human	genbank	54_36p	+1	validated	missense	c.4976	p.Y1659C	1.000	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Immunoglobulin	-	no_errors
TRIM48	79097	genome.wustl.edu	36	11	54789038	54789038	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	54789038	54789038	T	C	SNP	TRIM48	NM_024114	human	genbank	54_36p	+1	validated	missense	c.83	p.I28T	0.124	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850	HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
TNR	7143	genome.wustl.edu	36	1	173639301	173639301	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	173639301	173639301	C	T	SNP	TNR	NM_003285	human	genbank	54_36p	-1	validated	missense	c.574	p.E192K	0.979	PatternScan_EGF_1,PatternScan_EGF_2	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00181,superfamily_Fibronectin type III,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_EGF/Laminin	-	no_errors
CCDC37	348807	genome.wustl.edu	36	3	127625124	127625126	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	GGA	GGA			GGA	GGA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	127625124	127625126	GGA	-	DEL	CCDC37	NM_182628	human	genbank	54_36p	+1	validated	in_frame_del	c.1233_1235	p.E412in_frame_del	1.000:1.000:1.000	NULL	NULL	-	no_errors
LRRC4	64101	genome.wustl.edu	36	7	127456409	127456409	+	Silent	SNP	G	G	A			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	127456409	127456409	G	A	SNP	LRRC4	NM_022143	human	genbank	54_36p	-1	validated	silent	c.1521	p.P507	0.948	NULL	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	-	no_errors
MT-ND5	0	genome.wustl.edu	36	MT	13692	13692	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	13692	13692	A	G	SNP	MT-ND5	ENST00000361567	human	ensembl	54_36p	+1	known	missense	c.1355	p.N452S	NULL	HMMPfam_NADH5_C	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	no_errors
FRMD1	79981	genome.wustl.edu	36	6	168222417	168222417	+	Silent	SNP	G	G	A			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	168222417	168222417	G	A	SNP	FRMD1	NM_024919	human	genbank	54_36p	-1	validated	silent	c.207	p.A69	0.005	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,superfamily_Second domain of FERM,HMMPfam_FERM_M,superfamily_PH domain-like,HMMPfam_FERM_C	-	no_errors
C1orf56	54964	genome.wustl.edu	36	1	149287374	149287377	+	Frame_Shift_Del	DEL	AGTC	AGTC	-			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	AGTC	AGTC			AGTC	AGTC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	149287374	149287377	AGTC	-	DEL	C1orf56	NM_017860	human	genbank	54_36p	+1	predicted	frame_shift_del	c.427_430	p.S143fs	0.000:0.000:0.001:0.033	NULL	NULL	-	no_errors
uc003lhy.1	0	genome.wustl.edu	36	5	140222636	140222636	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140222636	140222636	C	-	DEL	uc003lhy.1	ENST00000319589	human	ensembl	54_36p	-1	known	frame_shift_del	c.524	p.G175fs	1.000	NULL	NULL	-	no_errors
ANKRD20A2	441430	genome.wustl.edu	36	9	42358610	42358610	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	42358610	42358610	A	G	SNP	ANKRD20A2	NM_001012421	human	genbank	54_36p	+1	validated	missense	c.200	p.H67R	0.013	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
LAD1	3898	genome.wustl.edu	36	1	199622625	199622627	+	In_Frame_Del	DEL	CCA	CCA	-			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	CCA	CCA			CCA	CCA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	199622625	199622627	CCA	-	DEL	LAD1	NM_005558	human	genbank	54_36p	-1	reviewed	in_frame_del	c.487_485	p.V162in_frame_del	0.000:0.000:0.000	NULL	NULL	-	no_errors
ARSD	414	genome.wustl.edu	36	X	2845863	2845863	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	2845863	2845863	G	T	SNP	ARSD	NM_001669	human	genbank	54_36p	-1	reviewed	missense	c.845	p.A282D	0.993	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like	HMMPfam_Sulfatase,PatternScan_SULFATASE_2,PatternScan_SULFATASE_1,superfamily_Alkaline phosphatase-like	-	no_errors
CTDP1	9150	genome.wustl.edu	36	18	75556215	75556215	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	75556215	75556215	C	T	SNP	CTDP1	NM_004715	human	genbank	54_36p	+1	reviewed	missense	c.317	p.A106V	0.875	NULL	superfamily_HAD-like,HMMPfam_NIF,HMMSmart_SM00577,superfamily_BRCT domain,HMMSmart_SM00292,HMMPfam_BRCT,HMMPfam_FCP1_C	-	no_errors
LOC339562	339562	genome.wustl.edu	36	2	91033123	91033123	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	91033123	91033123	G	A	SNP	LOC339562	XM_001713985	human	genbank	54_36p	+1	model	missense	c.101	p.S34N	0.002	NULL	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406	-	pseudogene
AHNAK2	113146	genome.wustl.edu	36	14	104489239	104489239	+	Silent	SNP	A	A	G			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	104489239	104489239	A	G	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	silent	c.3594	p.S1198	0.000	NULL	HMMPfam_Involucrin,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
CRHR2	1395	genome.wustl.edu	36	7	30659606	30659606	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	30659606	30659606	C	T	SNP	CRHR2	NM_001883	human	genbank	54_36p	-1	validated	missense	c.1231	p.V411M	0.994	NULL	superfamily_Hormone receptor domain (HRM Pfam 02793),HMMSmart_SM00008,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
SDK1	221935	genome.wustl.edu	36	7	3968835	3968835	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	3968835	3968835	C	G	SNP	SDK1	NM_152744	human	genbank	54_36p	+1	validated	missense	c.1255	p.Q419E	0.803	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
RRP7B	91695	genome.wustl.edu	36	22	41300059	41300060	+	RNA	INS	-	-	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	41300059	41300060	-	T	INS	RRP7B	NR_002184	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.000:0.000	-	-	-	pseudogene
SLC25A6	293	genome.wustl.edu	36	X	1468303	1468303	+	Silent	SNP	C	C	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	1468303	1468303	C	T	SNP	SLC25A6	NM_001636	human	genbank	54_36p	-1	validated	silent	c.429	p.A143	0.991	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors
ITIH5	80760	genome.wustl.edu	36	10	7648079	7648079	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	7648079	7648079	G	A	SNP	ITIH5	NM_030569	human	genbank	54_36p	-1	validated	missense	c.2447	p.P816L	1.000	HMMPfam_ITI_HC_C	HMMSmart_SM00609,HMMPfam_VIT,HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_ITI_HC_C	-	no_errors
VAV1	7409	genome.wustl.edu	36	19	6771781	6771781	+	Silent	SNP	C	C	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	6771781	6771781	C	T	SNP	VAV1	NM_005428	human	genbank	54_36p	+1	reviewed	silent	c.273	p.S91	0.988	HMMPfam_CH,superfamily_Calponin-homology,HMMSmart_CH	HMMPfam_CH,superfamily_Calponin-homology,HMMSmart_CH,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,PatternScan_DH_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_1,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2	-	no_errors
LOC649346	649346	genome.wustl.edu	36	8	12276572	12276572	+	RNA	SNP	A	A	C			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	12276572	12276572	A	C	SNP	LOC649346	XR_037511	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.996	-	-	-	pseudogene
ENSG00000182418	0	genome.wustl.edu	36	10	52089778	52089778	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	52089778	52089778	G	A	SNP	ENSG00000182418	ENST00000331308	human	ensembl	54_36p	-1	known	missense	c.10	p.H4Y	0.996	NULL	NULL	-	no_errors
HLA-A	3105	genome.wustl.edu	36	6	30018601	30018601	+	Silent	SNP	C	C	T			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	30018601	30018601	C	T	SNP	HLA-A	NM_002116	human	genbank	54_36p	+1	reviewed	silent	c.162	p.D54	0.964	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,HMMPfam_C1-set,superfamily_Immunoglobulin,HMMSmart_SM00407,PatternScan_IG_MHC,HMMPfam_MHC_I_C	-	no_errors
ENSG00000217945	0	genome.wustl.edu	36	NT_113961	149645	149645	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2941-03A-01W-0745-08	TCGA-AB-2941-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113961	149645	149645	G	C	SNP	ENSG00000217945	ENST00000402318	human	ensembl	54_36p	+1	novel	missense	c.2398	p.V800L	NULL	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_start_codon
