Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
FLT3	2322	genome.wustl.edu	36	13	27490642	27490642	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2947-03A-01W-0745-08	TCGA-AB-2947-11A-01W-0745-08	C	C			C	C	Verified	Valid	Somatic		Capture				Illumina GAIIx	13	27490642	27490642	C	A	SNP	FLT3					-1	reviewed	missense	c.2503	p.D835Y	1	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	NA
FOXD4L3	286380	genome.wustl.edu	36	9	70108525	70108525	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2947-03A-01W-0745-08	TCGA-AB-2947-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	70108525	70108525	G	C	SNP	FOXD4L3	NM_199135	human	genbank	54_36p	+1	validated	missense	c.838	p.G280R	0.014	NULL	HMMSmart_FH,superfamily_SSF46785,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2	-	no_errors
PLEKHG5	57449	genome.wustl.edu	36	1	6451055	6451055	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2947-03A-01W-0745-08	TCGA-AB-2947-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	6451055	6451055	C	T	SNP	PLEKHG5	NM_198681	human	genbank	54_36p	-1	reviewed	missense	c.2659	p.G887S	0.041	NULL	superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,HMMPfam_PH,superfamily_SSF50729,HMMSmart_PH	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25310746	25310746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2947-03A-01W-0745-08	TCGA-AB-2947-11A-01W-0745-08	C	C			C	C	Verified	Valid	Somatic		Capture				Illumina GAIIx	2	25310746	25310746	C	T	SNP	DNMT3A					-1	reviewed	missense	c.2645	p.R882H	1	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	NA
TYRO3	7301	genome.wustl.edu	36	15	39650093	39650093	+	Splice_Site	SNP	G	G	T			TCGA-AB-2947-03A-01W-0745-08	TCGA-AB-2947-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	39650093	39650093	G	T	SNP	TYRO3	NM_006293	human	genbank	54_36p	+1	provisional	splice_site	c.1484-1	e12-1	1.000	-	-	-	no_errors
LOC644637	644637	genome.wustl.edu	36	22	14729439	14729439	+	RNA	SNP	A	A	T			TCGA-AB-2947-03A-01W-0745-08	TCGA-AB-2947-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	14729439	14729439	A	T	SNP	LOC644637	XR_017623	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
ENSG00000217945	0	genome.wustl.edu	36	NT_113961	149081	149081	+	Silent	SNP	A	A	G			TCGA-AB-2947-03A-01W-0745-08	TCGA-AB-2947-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113961	149081	149081	A	G	SNP	ENSG00000217945	ENST00000402318	human	ensembl	54_36p	+1	novel	missense	c.1836	p.I612M	NULL	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_start_codon
LOC387745	387745	genome.wustl.edu	36	11	3388081	3388081	+	RNA	SNP	C	C	T			TCGA-AB-2947-03A-01W-0745-08	TCGA-AB-2947-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	3388081	3388081	C	T	SNP	LOC387745	XR_016307	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.492	-	-	-	pseudogene
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2947-03A-01W-0745-08	TCGA-AB-2947-11A-01W-0745-08	-	-			-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
