Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
DSCAML1	57453	genome.wustl.edu	36	11	116806856	116806856	+	Silent	SNP	G	G	A			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	116806856	116806856	G	A	SNP	DSCAML1	NM_020693	human	genbank	54_36p	-1	provisional	silent	c.5658	p.H1886	1.000	NULL	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
ADCY10	55811	genome.wustl.edu	36	1	166139804	166139804	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	166139804	166139804	T	A	SNP	ADCY10	NM_018417	human	genbank	54_36p	-1	validated	missense	c.198	p.R66S	1.000	HMMPfam_Guanylate_cyc,superfamily_Adenylyl and guanylyl cyclase catalytic domain	HMMPfam_Guanylate_cyc,superfamily_Adenylyl and guanylyl cyclase catalytic domain,superfamily_TPR-like	-	no_errors
PRX	57716	genome.wustl.edu	36	19	45594838	45594838	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	45594838	45594838	T	C	SNP	PRX	NM_181882	human	genbank	54_36p	-1	reviewed	missense	c.1261	p.K421E	0.996	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
ENSG00000215512	0	genome.wustl.edu	36	18	15313276	15313276	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	15313276	15313276	A	T	SNP	ENSG00000215512	ENST00000333851	human	ensembl	54_36p	-1	known	missense	c.377	p.I126N	0.012	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	PatternScan_ASP_PROTEASE,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_start_codon
GLIS3	169792	genome.wustl.edu	36	9	3818379	3818379	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	3818379	3818379	G	A	SNP	GLIS3	NM_001042413	human	genbank	54_36p	-1	reviewed	missense	c.2686	p.L896F	0.997	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
EFCAB6	64800	genome.wustl.edu	36	22	42317297	42317297	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	42317297	42317297	G	T	SNP	EFCAB6	NM_022785	human	genbank	54_36p	-1	validated	missense	c.3022	p.L1008M	0.478	superfamily_EF-hand	superfamily_EF-hand,HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_DUF1880	-	no_errors
FAT1	2195	genome.wustl.edu	36	4	187821731	187821731	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	187821731	187821731	C	G	SNP	FAT1	NM_005245	human	genbank	54_36p	-1	reviewed	missense	c.3296	p.R1099P	0.989	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
MDM2	4193	genome.wustl.edu	36	12	67516784	67516784	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	67516784	67516784	A	C	SNP	MDM2	NM_002392	human	genbank	54_36p	+1	reviewed	missense	c.906	p.E302D	1.000	NULL	superfamily_SWIB/MDM2 domain,HMMPfam_SWIB,HMMPfam_zf-RanBP,PatternScan_ZF_RANBP2_1,superfamily_RING/U-box	-	no_errors
ENSG00000200463	0	genome.wustl.edu	36	17	8017594	8017595	+	RNA	INS	-	-	GGA			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	8017594	8017595	-	GGA	INS	ENSG00000200463	ENST00000363593	human	ensembl	54_36p	-1	novel	rna	NULL	NULL	0.688:0.440	-	-	-	no_errors
GPR101	83550	genome.wustl.edu	36	X	135941370	135941370	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	135941370	135941370	C	T	SNP	GPR101	NM_054021	human	genbank	54_36p	-1	provisional	missense	c.130	p.A44T	0.001	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PRIM2	5558	genome.wustl.edu	36	6	57501119	57501119	+	Silent	SNP	G	G	A			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	57501119	57501119	G	A	SNP	PRIM2	ENST00000389488	human	ensembl	54_36p	+1	known	silent	c.810	p.K270	1.000	HMMPfam_DNA_primase_lrg	HMMPfam_DNA_primase_lrg	-	no_errors
C15orf60	283677	genome.wustl.edu	36	15	71522583	71522583	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	71522583	71522583	G	A	SNP	C15orf60	NM_001042367	human	genbank	54_36p	+1	predicted	missense	c.4	p.A2T	0.997	NULL	NULL	-	no_errors
ZNF343	79175	genome.wustl.edu	36	20	2412478	2412478	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	2412478	2412478	C	T	SNP	ZNF343	NM_024325	human	genbank	54_36p	-1	validated	missense	c.1129	p.G377S	0.746	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
C8orf80	389643	genome.wustl.edu	36	8	27978130	27978130	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	27978130	27978130	C	T	SNP	C8orf80	NM_001010906	human	genbank	54_36p	-1	predicted	missense	c.749	p.R250H	0.973	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
C16orf71	146562	genome.wustl.edu	36	16	4736954	4736956	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	GAG	GAG			GAG	GAG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	4736954	4736956	GAG	-	DEL	C16orf71	NM_139170	human	genbank	54_36p	+1	validated	in_frame_del	c.1207_1209	p.E406in_frame_del	1.000:0.999:1.000	NULL	NULL	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517806	7517806	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	7517806	7517806	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.857	p.E286G	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TRIM45	80263	genome.wustl.edu	36	1	117464866	117464866	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	117464866	117464866	C	T	SNP	TRIM45	NM_025188	human	genbank	54_36p	-1	reviewed	missense	c.481	p.A161T	1.000	HMMPfam_zf-B_box,HMMSmart_SM00336	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00502,HMMPfam_Filamin,superfamily_E set domains,HMMSmart_SM00557	-	no_errors
GRIK4	2900	genome.wustl.edu	36	11	120207797	120207797	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	120207797	120207797	C	T	SNP	GRIK4	NM_014619	human	genbank	54_36p	+1	reviewed	missense	c.538	p.R180W	1.000	superfamily_SSF53822,HMMPfam_ANF_receptor	superfamily_SSF53822,HMMPfam_ANF_receptor,HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors
NRAS	4893	genome.wustl.edu	36	1	115060270	115060270	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2952-03A-01W-0733-08	TCGA-AB-2952-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	115060270	115060270	C	T	SNP	NRAS	NM_002524	human	genbank	54_36p	-1	reviewed	missense	c.35	p.G12D	1.000	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
