Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
PLCE1	51196	genome.wustl.edu	36	10	95781506	95781506	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	95781506	95781506	T	C	SNP	PLCE1	NM_016341	human	genbank	54_36p	+1	validated	missense	c.713	p.M238T	0.287	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_RA,HMMSmart_SM00314,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,superfamily_EF-hand	-	no_errors
MYOM3	127294	genome.wustl.edu	36	1	24305101	24305101	+	Silent	SNP	G	G	A			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	24305101	24305101	G	A	SNP	MYOM3	NM_152372	human	genbank	54_36p	-1	validated	silent	c.456	p.R152	0.929	superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,PatternScan_EF_HAND_1,superfamily_Immunoglobulin	-	no_errors
KIF1C	10749	genome.wustl.edu	36	17	4847693	4847693	+	Silent	SNP	G	G	A			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	4847693	4847693	G	A	SNP	KIF1C	NM_006612	human	genbank	54_36p	+1	provisional	silent	c.783	p.R261	1.000	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540	HMMPfam_FHA,HMMSmart_FHA,HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SMAD_FHA,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540	-	no_errors
CCDC67	159989	genome.wustl.edu	36	11	92729775	92729775	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	92729775	92729775	G	A	SNP	CCDC67	NM_181645	human	genbank	54_36p	+1	validated	missense	c.215	p.R72Q	0.999	NULL	NULL	-	no_errors
CRB1	23418	genome.wustl.edu	36	1	195657028	195657028	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	195657028	195657028	G	A	SNP	CRB1	NM_201253	human	genbank	54_36p	+1	reviewed	missense	c.1447	p.A483T	0.005	superfamily_Concanavalin A-like lectins/glucanases	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_C_TYPE_LECTIN_1	-	no_errors
LOC100133234	100133234	genome.wustl.edu	36	8	56529812	56529812	+	RNA	SNP	G	G	A			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	56529812	56529812	G	A	SNP	LOC100133234	XR_038021	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC152845	152845	genome.wustl.edu	36	4	85384652	85384652	+	RNA	SNP	G	G	A			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	85384652	85384652	G	A	SNP	LOC152845	XR_038721	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
NUP93	9688	genome.wustl.edu	36	16	55389922	55389922	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	55389922	55389922	C	A	SNP	NUP93	NM_014669	human	genbank	54_36p	+1	validated	missense	c.331	p.L111M	1.000	NULL	HMMPfam_Nic96	-	no_errors
APOB	338	genome.wustl.edu	36	2	21088903	21088903	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	21088903	21088903	C	T	SNP	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	missense	c.4342	p.V1448I	0.001	NULL	superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex superhelical domain,HMMPfam_DUF1943,HMMPfam_DUF1081	-	no_errors
DOCK5	80005	genome.wustl.edu	36	8	25192027	25192027	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	25192027	25192027	G	A	SNP	DOCK5	NM_024940	human	genbank	54_36p	+1	validated	missense	c.250	p.E84K	0.981	NULL	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
CLEC7A	64581	genome.wustl.edu	36	12	10171664	10171664	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	10171664	10171664	C	T	SNP	CLEC7A	NM_197947	human	genbank	54_36p	-1	reviewed	missense	c.151	p.G51R	0.195	HMMPfam_Ly49	HMMPfam_Ly49,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	-	no_errors
NRAP	4892	genome.wustl.edu	36	10	115347805	115347805	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	115347805	115347805	G	T	SNP	NRAP	NM_198060	human	genbank	54_36p	-1	validated	missense	c.4245	p.D1415E	1.000	HMMSmart_SM00227	HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,HMMSmart_SM00227,HMMPfam_Nebulin	-	no_errors
PHF6	84295	genome.wustl.edu	36	X	133375518	133375518	+	Splice_Site	SNP	G	G	T			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	133375518	133375518	G	T	SNP	PHF6	NM_001015877	human	genbank	54_36p	+1	reviewed	splice_site	c.586-1	e6-1	1.000	-	-	-	no_errors
AQP5	362	genome.wustl.edu	36	12	48643666	48643666	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	48643666	48643666	T	C	SNP	AQP5	NM_001651	human	genbank	54_36p	+1	reviewed	missense	c.488	p.L163P	0.991	superfamily_MIP,HMMPfam_MIP	superfamily_MIP,HMMPfam_MIP,PatternScan_MIP	-	no_errors
ZBTB33	10009	genome.wustl.edu	36	X	119271528	119271528	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	119271528	119271528	T	A	SNP	ZBTB33	NM_006777	human	genbank	54_36p	+1	validated	missense	c.230	p.I77N	1.000	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
SLCO5A1	81796	genome.wustl.edu	36	8	70907326	70907326	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	70907326	70907326	C	T	SNP	SLCO5A1	NM_030958	human	genbank	54_36p	-1	reviewed	missense	c.137	p.C46Y	0.999	NULL	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_2	-	no_errors
UBR3	130507	genome.wustl.edu	36	2	170626130	170626130	+	Silent	SNP	C	C	T			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	170626130	170626130	C	T	SNP	UBR3	NM_172070	human	genbank	54_36p	+1	validated	silent	c.1509	p.C503	1.000	NULL	HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
RTN4RL1	146760	genome.wustl.edu	36	17	1787436	1787436	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	1787436	1787436	C	T	SNP	RTN4RL1	NM_178568	human	genbank	54_36p	-1	validated	missense	c.430	p.V144I	1.000	superfamily_L domain-like,HMMSmart_SM00369	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082	-	no_errors
FLT1	2321	genome.wustl.edu	36	13	27778869	27778869	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	27778869	27778869	A	G	SNP	FLT1	NM_002019	human	genbank	54_36p	-1	validated	missense	c.3761	p.M1254T	0.733	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMSmart_SM00406,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
GLB1L2	89944	genome.wustl.edu	36	11	133749810	133749810	+	Silent	SNP	C	C	T			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	133749810	133749810	C	T	SNP	GLB1L2	NM_138342	human	genbank	54_36p	+1	provisional	silent	c.1812	p.S604	0.421	NULL	HMMPfam_Glyco_hydro_35,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F35	-	no_errors
CASC5	57082	genome.wustl.edu	36	15	38703884	38703884	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	38703884	38703884	G	C	SNP	CASC5	NM_170589	human	genbank	54_36p	+1	validated	missense	c.4208	p.G1403A	0.044	NULL	NULL	-	no_errors
SCUBE2	57758	genome.wustl.edu	36	11	9057523	9057523	+	Silent	SNP	G	G	A			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	9057523	9057523	G	A	SNP	SCUBE2	NM_020974	human	genbank	54_36p	-1	provisional	silent	c.366	p.D122	1.000	HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_2	PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMPfam_EGF,superfamily_Growth factor receptor domain,HMMPfam_GCC2_GCC3,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	-	no_errors
GZMB	3002	genome.wustl.edu	36	14	24171052	24171052	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	24171052	24171052	G	A	SNP	GZMB	NM_004131	human	genbank	54_36p	-1	reviewed	missense	c.452	p.A151V	0.000	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
PDS5B	23047	genome.wustl.edu	36	13	32236670	32236670	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	32236670	32236670	A	G	SNP	PDS5B	NM_015032	human	genbank	54_36p	+1	validated	missense	c.3562	p.T1188A	0.987	NULL	superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_AT_hook	-	no_errors
CEBPE	1053	genome.wustl.edu	36	14	22656548	22656548	+	Silent	SNP	C	C	A			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	22656548	22656548	C	A	SNP	CEBPE	NM_001805	human	genbank	54_36p	-1	reviewed	silent	c.834	p.G278	0.996	NULL	PatternScan_BZIP_BASIC,HMMSmart_BRLZ,HMMPfam_bZIP_2	-	no_errors
RIMS1	22999	genome.wustl.edu	36	6	73024680	73024680	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	73024680	73024680	C	T	SNP	RIMS1	NM_014989	human	genbank	54_36p	+1	validated	missense	c.2902	p.R968C	1.000	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger,PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors
TPO	7173	genome.wustl.edu	36	2	1436476	1436476	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	1436476	1436476	C	A	SNP	TPO	NM_000547	human	genbank	54_36p	+1	reviewed	missense	c.486	p.D162E	0.965	superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase	superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase,PatternScan_PEROXIDASE_1,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors
ZNF133	7692	genome.wustl.edu	36	20	18245128	18245128	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	18245128	18245128	T	G	SNP	ZNF133	NM_001083330	human	genbank	54_36p	+1	validated	missense	c.1630	p.S544A	0.980	superfamily_SSF57667	HMMPfam_KRAB,superfamily_Krueppel-associated_box,HMMSmart_KRAB,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors
CCDC24	149473	genome.wustl.edu	36	1	44233906	44233906	+	Missense_Mutation	SNP	C	C	A	rs11912723	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	44233906	44233906	C	A	SNP	CCDC24	NM_152499	human	genbank	54_36p	+1	provisional	missense	c.599	p.A200E	0.002	NULL	NULL	-	no_errors
IDH2	3418	genome.wustl.edu	36	15	88432938	88432938	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	88432938	88432938	C	T	SNP	IDH2	NM_002168	human	genbank	54_36p	-1	reviewed	missense	c.419	p.R140Q	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
RUNX1	861	genome.wustl.edu	36	21	35153652	35153652	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	35153652	35153652	C	T	SNP	RUNX1	NM_001754	human	genbank	54_36p	-1	reviewed	missense	c.602	p.R201Q	1.000	superfamily_p53-like transcription factors,HMMPfam_Runt	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
PABPC3	5042	genome.wustl.edu	36	13	24568652	24568652	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2959-03A-01W-0733-08	TCGA-AB-2959-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	24568652	24568652	C	G	SNP	PABPC3	NM_030979	human	genbank	54_36p	+1	validated	missense	c.316	p.L106V	0.998	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMSmart_SM00361,HMMPfam_RRM_1	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMSmart_SM00361,superfamily_PABC (PABP) domain,HMMPfam_PABP,HMMSmart_SM00517	-	no_errors
