Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
TACR3	6870	genome.wustl.edu	36	4	104730348	104730348	+	Silent	SNP	A	A	G			TCGA-AB-2964-03A-01D-0739-09	TCGA-AB-2964-11A-01D-0739-09	A	A			A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	4	104730348	104730348	A	G	SNP	TACR3	NM_001059	human	genbank	54_36p	-1	reviewed	silent	c.1338	p.S446	0.958	NULL	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
TMTC2	160335	genome.wustl.edu	36	12	82050201	82050201	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2964-03A-01D-0739-09	TCGA-AB-2964-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	12	82050201	82050201	G	A	SNP	TMTC2	NM_152588	human	genbank	54_36p	+1	provisional	missense	c.2413	p.A805T	1.000	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	HMMPfam_DUF1736,superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028,HMMPfam_TPR_2	-	no_errors
CAPN6	827	genome.wustl.edu	36	X	110393663	110393663	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2964-03A-01D-0739-09	TCGA-AB-2964-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	110393663	110393663	C	T	SNP	CAPN6	NM_014289	human	genbank	54_36p	-1	reviewed	missense	c.158	p.R53H	0.998	superfamily_SSF54001,HMMSmart_CysPc,HMMPfam_Peptidase_C2	PatternScan_THIOL_PROTEASE_CYS,PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN,superfamily_SSF54001,HMMSmart_CysPc,HMMPfam_Peptidase_C2,HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
PRSS27	83886	genome.wustl.edu	36	16	2703666	2703666	+	Silent	SNP	G	G	C			TCGA-AB-2964-03A-01D-0739-09	TCGA-AB-2964-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	16	2703666	2703666	G	C	SNP	PRSS27	NM_031948	human	genbank	54_36p	-1	validated	silent	c.543	p.L181	0.031	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
OR5K3	403277	genome.wustl.edu	36	3	99593011	99593011	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2964-03A-01D-0739-09	TCGA-AB-2964-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	3	99593011	99593011	C	G	SNP	OR5K3	NM_001005516	human	genbank	54_36p	+1	provisional	missense	c.812	p.P271R	0.000	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
TET2	54790	genome.wustl.edu	36	4	106416782	106416782	+	Silent	SNP	T	T	C			TCGA-AB-2964-03A-01D-0739-09	TCGA-AB-2964-11A-01D-0739-09	T	T			T	T	Verified	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	4	106416782	106416782	T	C	SNP	TET2	ENST00000265149	human	ensembl	54_36p	1	known	silent	c.2072	p.P691	NA	NA	NA	NA	NA
ZNF75D	7626	genome.wustl.edu	36	X	134255719	134255719	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2964-03A-01D-0739-09	TCGA-AB-2964-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	134255719	134255719	T	C	SNP	ZNF75D	NM_007131	human	genbank	54_36p	-1	validated	missense	c.14	p.E5G	0.003	NULL	HMMPfam_SCAN,HMMSmart_SCAN,superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ARHGAP5	394	genome.wustl.edu	36	14	31630239	31630239	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2964-03A-01D-0739-09	TCGA-AB-2964-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	14	31630239	31630239	G	A	SNP	ARHGAP5	NM_001030055	human	genbank	54_36p	+1	reviewed	missense	c.613	p.V205M	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00441,HMMPfam_FF,superfamily_FF domain,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
SHROOM2	357	genome.wustl.edu	36	X	9860372	9860372	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2964-03A-01D-0739-09	TCGA-AB-2964-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	9860372	9860372	C	T	SNP	SHROOM2	NM_001649	human	genbank	54_36p	+1	reviewed	nonsense	c.3049	p.R1017*	0.732	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_ASD2,HMMPfam_ASD1	-	no_errors
TET2	54790	genome.wustl.edu	36	4	106377294	106377294	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2964-03A-01D-0739-09	TCGA-AB-2964-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	4	106377294	106377294	C	T	SNP	TET2	NM_017628	human	genbank	54_36p	+1	validated	nonsense	c.2746	p.Q916*	0.006	NULL	NULL	-	no_errors
CACNA1E	777	genome.wustl.edu	36	1	179955981	179955981	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2964-03A-01D-0739-09	TCGA-AB-2964-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	179955981	179955981	C	T	SNP	CACNA1E	NM_000721	human	genbank	54_36p	+1	reviewed	missense	c.1768	p.R590W	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors
CAMTA1	23261	genome.wustl.edu	36	1	7644402	7644402	+	Missense_Mutation	SNP	G	G	A	rs12977750		TCGA-AB-2964-03A-01D-0739-09	TCGA-AB-2964-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	7644402	7644402	G	A	SNP	CAMTA1	NM_015215	human	genbank	54_36p	+1	validated	missense	c.694	p.G232R	1.000	NULL	HMMPfam_CG-1,superfamily_E set domains,HMMPfam_TIG,superfamily_Ankyrin repeat,HMMPfam_Ank,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_IQ	-	no_errors
OR6A2	8590	genome.wustl.edu	36	11	6772949	6772949	+	Silent	SNP	C	C	T			TCGA-AB-2964-03A-01D-0739-09	TCGA-AB-2964-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	6772949	6772949	C	T	SNP	OR6A2	NM_003696	human	genbank	54_36p	-1	provisional	silent	c.567	p.L189	0.006	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
TET2	54790	genome.wustl.edu	36	4	106416782	106416782	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2964-03A-01D-0739-09	TCGA-AB-2964-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	4	106416782	106416782	C	T	SNP	TET2	ENST00000265149	human	ensembl	54_36p	+1	known	missense	c.2072	p.P691L	1.000	NULL	NULL	-	no_start_codon
STC2	8614	genome.wustl.edu	36	5	172677558	172677558	+	Silent	SNP	G	G	A			TCGA-AB-2964-03A-01D-0739-09	TCGA-AB-2964-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	172677558	172677558	G	A	SNP	STC2	NM_003714	human	genbank	54_36p	-1	reviewed	silent	c.807	p.N269	0.153	HMMPfam_Stanniocalcin	HMMPfam_Stanniocalcin	-	no_errors
AHCYL1	10768	genome.wustl.edu	36	1	110362786	110362786	+	Silent	SNP	C	C	T			TCGA-AB-2964-03A-01D-0739-09	TCGA-AB-2964-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	110362786	110362786	C	T	SNP	AHCYL1	NM_006621	human	genbank	54_36p	+1	validated	silent	c.1308	p.L436	0.942	superfamily_Formate/glycerate dehydrogenase catalytic domain-like,HMMPfam_AdoHcyase,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_AdoHcyase_NAD	superfamily_Formate/glycerate dehydrogenase catalytic domain-like,HMMPfam_AdoHcyase,PatternScan_ADOHCYASE_1,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_AdoHcyase_NAD,PatternScan_ADOHCYASE_2	-	no_errors
ARSF	416	genome.wustl.edu	36	X	3031841	3031841	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2964-03A-01D-0739-09	TCGA-AB-2964-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	3031841	3031841	G	A	SNP	ARSF	NM_004042	human	genbank	54_36p	+1	reviewed	missense	c.1141	p.V381I	1.000	superfamily_Alkaline phosphatase-like,HMMPfam_Sulfatase	superfamily_Alkaline phosphatase-like,HMMPfam_Sulfatase,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2	-	no_errors
ELN	2006	genome.wustl.edu	36	7	73089974	73089974	+	Silent	SNP	G	G	A			TCGA-AB-2964-03A-01D-0739-09	TCGA-AB-2964-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	7	73089974	73089974	G	A	SNP	ELN	NM_000501	human	genbank	54_36p	+1	reviewed	silent	c.165	p.A55	0.285	NULL	PatternScan_ENDONUCLEASE_III_2,PatternScan_HEXAPEP_TRANSFERASES	-	no_errors
STAG2	10735	genome.wustl.edu	36	X	123032722	123032722	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2964-03A-01D-0739-09	TCGA-AB-2964-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	123032722	123032722	C	T	SNP	STAG2	NM_001042749	human	genbank	54_36p	+1	validated	nonsense	c.2401	p.Q801*	1.000	superfamily_ARM-type_fold	HMMPfam_STAG,superfamily_ARM-type_fold	-	no_errors
ZFHX2	85446	genome.wustl.edu	36	14	23065061	23065061	+	Silent	SNP	G	G	T			TCGA-AB-2964-03A-01D-0739-09	TCGA-AB-2964-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	14	23065061	23065061	G	T	SNP	ZFHX2	XM_001720095	human	genbank	54_36p	-1	model	silent	c.4332	p.G1444	0.892	NULL	HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00451,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
