Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
PRODH2	58510	genome.wustl.edu	36	19	40995491	40995491	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2968-03A-01D-0739-09	TCGA-AB-2968-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	40995491	40995491	C	T	SNP	PRODH2	NM_021232	human	genbank	54_36p	-1	reviewed	nonsense	c.285	p.W95*	0.998	NULL	HMMPfam_Pro_dh,superfamily_SSF51730	-	no_errors
DDX60	55601	genome.wustl.edu	36	4	169378394	169378394	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2968-03A-01D-0739-09	TCGA-AB-2968-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	4	169378394	169378394	T	C	SNP	DDX60	NM_017631	human	genbank	54_36p	-1	validated	missense	c.5026	p.I1676V	0.362	NULL	HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25322533	25322533	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2968-03A-01D-0739-09	TCGA-AB-2968-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	25322533	25322533	C	A	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	nonsense	c.1429	p.E477*	1.000	NULL	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
MTUS2	23281	genome.wustl.edu	36	13	28753919	28753919	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2968-03A-01D-0739-09	TCGA-AB-2968-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	13	28753919	28753919	G	A	SNP	KIAA0774	NM_001033602	human	genbank	54_36p	+1	validated	missense	c.2753	p.R918Q	0.496	NULL	NULL	-	no_errors
KSR2	283455	genome.wustl.edu	36	12	116406649	116406649	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2968-03A-01D-0739-09	TCGA-AB-2968-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	12	116406649	116406649	G	A	SNP	KSR2	NM_173598	human	genbank	54_36p	-1	validated	missense	c.2042	p.T681M	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,superfamily_Cysteine-rich domain	-	no_errors
NRAS	4893	genome.wustl.edu	36	1	115058051	115058051	+	Missense_Mutation	SNP	T	T	A	rs11554290	byCluster;byHapMap	TCGA-AB-2968-03A-01D-0739-09	TCGA-AB-2968-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	115058051	115058051	T	A	SNP	NRAS	NM_002524	human	genbank	54_36p	-1	reviewed	missense	c.183	p.Q61H	1.000	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
U2AF1	7307	genome.wustl.edu	36	21	43397525	43397525	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2968-03A-01D-0739-09	TCGA-AB-2968-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	21	43397525	43397525	G	A	SNP	U2AF1	NM_001025203	human	genbank	54_36p	-1	reviewed	missense	c.101	p.S34F	1.000	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,superfamily_SSF54928	-	no_errors
FBXL18	80028	genome.wustl.edu	36	7	5506935	5506935	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2968-03A-01D-0739-09	TCGA-AB-2968-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	7	5506935	5506935	G	A	SNP	FBXL18	ENST00000297035	human	ensembl	54_36p	-1	known	missense	c.166	p.R56C	0.174	NULL	NULL	-	no_errors
EXOC2	55770	genome.wustl.edu	36	6	537581	537581	+	Silent	SNP	C	C	G			TCGA-AB-2968-03A-01D-0739-09	TCGA-AB-2968-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	537581	537581	C	G	SNP	EXOC2	NM_018303	human	genbank	54_36p	-1	reviewed	silent	c.1080	p.L360	1.000	NULL	HMMPfam_TIG,superfamily_Ig_E-set	-	no_errors
COMMD5	28991	genome.wustl.edu	36	8	146047513	146047513	+	Silent	SNP	C	C	G			TCGA-AB-2968-03A-01D-0739-09	TCGA-AB-2968-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	8	146047513	146047513	C	G	SNP	COMMD5	NM_001081003	human	genbank	54_36p	-1	validated	silent	c.15	p.G5	0.745	NULL	HMMPfam_HCaRG	-	no_errors
PLCZ1	89869	genome.wustl.edu	36	12	18757102	18757102	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2968-03A-01D-0739-09	TCGA-AB-2968-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	12	18757102	18757102	G	A	SNP	PLCZ1	NM_033123	human	genbank	54_36p	-1	provisional	missense	c.655	p.L219F	0.998	HMMPfam_PI-PLC-X,HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,superfamily_EF-hand	-	no_errors
PTCH1	5727	genome.wustl.edu	36	9	97269319	97269319	+	Silent	SNP	G	G	A			TCGA-AB-2968-03A-01D-0739-09	TCGA-AB-2968-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	9	97269319	97269319	G	A	SNP	PTCH1	NM_000264	human	genbank	54_36p	-1	reviewed	silent	c.2460	p.Y820	0.971	HMMPfam_Patched	HMMPfam_Patched,superfamily_SSF82866	-	no_errors
NIPBL	25836	genome.wustl.edu	36	5	37099862	37099862	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2968-03A-01D-0739-09	TCGA-AB-2968-11A-01D-0739-09	A	A			A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	37099862	37099862	A	G	SNP	NIPBL	NM_015384	human	genbank	54_36p	+1	reviewed	missense	c.8074	p.I2692V	1.000	NULL	superfamily_ARM-type_fold	-	no_errors
EIF4B	1975	genome.wustl.edu	36	12	51699990	51699990	+	Silent	SNP	C	C	G			TCGA-AB-2968-03A-01D-0739-09	TCGA-AB-2968-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	12	51699990	51699990	C	G	SNP	EIF4B	NM_001417	human	genbank	54_36p	+1	validated	silent	c.390	p.P130	1.000	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25316775	25316775	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2968-03A-01D-0739-09	TCGA-AB-2968-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	25316775	25316775	G	A	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2222	p.A741V	1.000	HMMPfam_DNA_methylase,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
LOC648154	648154	genome.wustl.edu	36	1	220952446	220952446	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2968-03A-01D-0739-09	TCGA-AB-2968-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	220952446	220952446	G	T	SNP	LOC648154	XM_938815	human	genbank	54_36p	-1	model	missense	c.301	p.L101M	0.998	NULL	NULL	-	no_errors
BPTF	2186	genome.wustl.edu	36	17	63338445	63338445	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2968-03A-01D-0739-09	TCGA-AB-2968-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	17	63338445	63338445	T	G	SNP	BPTF	NM_182641	human	genbank	54_36p	+1	reviewed	missense	c.3983	p.V1328G	0.020	NULL	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMSmart_PHD,HMMPfam_DDT,superfamily_FYVE_PHD_ZnF,HMMPfam_FYDLN_acid,PatternScan_EGF_2,PatternScan_BROMODOMAIN_1,HMMSmart_DDT,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
