Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
MAPK1	5594	genome.wustl.edu	36	22	20483395	20483395	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2971-03A-01D-0739-09	TCGA-AB-2971-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	22	20483395	20483395	C	T	SNP	MAPK1	NM_002745	human	genbank	54_36p	-1	reviewed	missense	c.515	p.R172H	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_MAPK,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CACNA1E	777	genome.wustl.edu	36	1	179991826	179991826	+	Silent	SNP	C	C	T			TCGA-AB-2971-03A-01D-0739-09	TCGA-AB-2971-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	179991826	179991826	C	T	SNP	CACNA1E	NM_000721	human	genbank	54_36p	+1	reviewed	silent	c.4101	p.T1367	0.505	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
TET2	54790	genome.wustl.edu	36	4	106377758	106377758	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AB-2971-03A-01D-0739-09	TCGA-AB-2971-11A-01D-0739-09	T	T			T	T	Verified	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	4	106377758	106377758	T	0	DEL	TET2	NM_017628	human	genbank	54_36p	1	validated	frame_shift_del	c.3210	p.A1071fs	NA	NA	NA	NA	NA
PTPRN2	5799	genome.wustl.edu	36	7	157089515	157089515	+	Silent	SNP	C	C	T			TCGA-AB-2971-03A-01D-0739-09	TCGA-AB-2971-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	7	157089515	157089515	C	T	SNP	PTPRN2	NM_002847	human	genbank	54_36p	-1	reviewed	silent	c.2358	p.R786	1.000	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
E2F8	79733	genome.wustl.edu	36	11	19207681	19207681	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2971-03A-01D-0739-09	TCGA-AB-2971-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	19207681	19207681	C	A	SNP	E2F8	NM_024680	human	genbank	54_36p	-1	validated	nonsense	c.1789	p.E597*	0.065	NULL	"HMMPfam_E2F_TDP,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
TET2	54790	genome.wustl.edu	36	4	106416704	106416704	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2971-03A-01D-0739-09	TCGA-AB-2971-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	4	106416704	106416704	C	A	SNP	TET2	ENST00000265149	human	ensembl	54_36p	+1	known	missense	c.1994	p.A665D	0.997	NULL	NULL	-	no_start_codon
LOC644800	644800	genome.wustl.edu	36	15	98149348	98149348	+	Silent	SNP	C	C	T			TCGA-AB-2971-03A-01D-0739-09	TCGA-AB-2971-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	15	98149348	98149348	C	T	SNP	LOC644800	XM_001715415	human	genbank	54_36p	+1	model	silent	c.99	p.D33	0.992	NULL	NULL	-	no_errors
ENSG00000167390	0	genome.wustl.edu	36	20	23919112	23919112	+	Silent	SNP	C	C	T			TCGA-AB-2971-03A-01D-0739-09	TCGA-AB-2971-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	20	23919112	23919112	C	T	SNP	ENSG00000167390	ENST00000319850	human	ensembl	54_36p	+1	known	silent	c.666	p.Y222	0.044	NULL	NULL	-	no_stop_codon
BMP5	653	genome.wustl.edu	36	6	55746872	55746872	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2971-03A-01D-0739-09	TCGA-AB-2971-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	55746872	55746872	G	A	SNP	BMP5	NM_021073	human	genbank	54_36p	-1	reviewed	nonsense	c.961	p.R321*	1.000	NULL	HMMPfam_TGFb_propeptide,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1,superfamily_SSF57501	-	no_errors
RBM44	375316	genome.wustl.edu	36	2	238407723	238407723	+	Silent	SNP	A	A	G			TCGA-AB-2971-03A-01D-0739-09	TCGA-AB-2971-11A-01D-0739-09	A	A			A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	238407723	238407723	A	G	SNP	RBM44	NM_001080504	human	genbank	54_36p	+1	validated	silent	c.3096	p.L1032	0.992	NULL	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	-	no_errors
WEE1	7465	genome.wustl.edu	36	11	9566612	9566612	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2971-03A-01D-0739-09	TCGA-AB-2971-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	9566612	9566612	G	A	SNP	WEE1	NM_003390	human	genbank	54_36p	+1	reviewed	missense	c.1828	p.E610K	1.000	NULL	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
LOC100128077	100128077	genome.wustl.edu	36	9	131293063	131293063	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2971-03A-01D-0739-09	TCGA-AB-2971-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	9	131293063	131293063	T	G	SNP	LOC100128077	XM_001726459	human	genbank	54_36p	+1	model	missense	c.483	p.H161Q	0.001	NULL	NULL	-	no_errors
STK32A	202374	genome.wustl.edu	36	5	146734860	146734860	+	Silent	SNP	T	T	C			TCGA-AB-2971-03A-01D-0739-09	TCGA-AB-2971-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	146734860	146734860	T	C	SNP	STK32A	ENST00000306304	human	ensembl	54_36p	+1	known	silent	c.918	p.N306	1.000	superfamily_Kinase_like	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CNTNAP4	85445	genome.wustl.edu	36	16	75018881	75018881	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2971-03A-01D-0739-09	TCGA-AB-2971-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	16	75018881	75018881	T	A	SNP	CNTNAP4	NM_138994	human	genbank	54_36p	+1	validated	missense	c.347	p.V116D	0.998	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_SM00282,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
SAP130	79595	genome.wustl.edu	36	2	128487156	128487156	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2971-03A-01D-0739-09	TCGA-AB-2971-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	128487156	128487156	G	A	SNP	SAP130	NM_024545	human	genbank	54_36p	-1	validated	missense	c.740	p.T247I	0.999	NULL	NULL	-	no_errors
MTMR8	55613	genome.wustl.edu	36	X	63405327	63405327	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2971-03A-01D-0739-09	TCGA-AB-2971-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	63405327	63405327	C	T	SNP	MTMR8	NM_017677	human	genbank	54_36p	-1	provisional	missense	c.1930	p.E644K	0.003	NULL	HMMSmart_SM00404,HMMPfam_Myotub-related,PatternScan_TYR_PHOSPHATASE_1,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
