Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
CBL	867	genome.wustl.edu	36	11	118673340	118673340	+	Silent	SNP	G	G	A			TCGA-AB-2978-03A-01D-0739-09	TCGA-AB-2978-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	118673340	118673340	G	A	SNP	CBL	NM_005188	human	genbank	54_36p	+1	reviewed	silent	c.2190	p.T730	0.666	NULL	HMMPfam_UBA,HMMSmart_RING,HMMPfam_Cbl_N,superfamily_Adaptor_Cbl_N,HMMPfam_Cbl_N2,HMMPfam_Cbl_N3,HMMSmart_UBA,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF47473,superfamily_SSF55550,superfamily_SSF57850	-	no_errors
CEACAM19	56971	genome.wustl.edu	36	19	49876379	49876379	+	Silent	SNP	C	C	A			TCGA-AB-2978-03A-01D-0739-09	TCGA-AB-2978-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	49876379	49876379	C	A	SNP	CEACAM19	NM_020219	human	genbank	54_36p	+1	validated	silent	c.747	p.L249	0.676	NULL	superfamily_Immunoglobulin	-	no_errors
RASSF9	9182	genome.wustl.edu	36	12	84723327	84723327	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2978-03A-01D-0739-09	TCGA-AB-2978-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	12	84723327	84723327	G	T	SNP	RASSF9	NM_005447	human	genbank	54_36p	-1	reviewed	missense	c.592	p.H198N	1.000	NULL	HMMSmart_SM00314	-	no_errors
OR5M1	390168	genome.wustl.edu	36	11	56137457	56137457	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2978-03A-01D-0739-09	TCGA-AB-2978-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	56137457	56137457	G	A	SNP	OR5M1	NM_001004740	human	genbank	54_36p	-1	provisional	missense	c.98	p.A33V	0.053	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PRKAA2	5563	genome.wustl.edu	36	1	56934311	56934311	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2978-03A-01D-0739-09	TCGA-AB-2978-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	56934311	56934311	C	T	SNP	PRKAA2	NM_006252	human	genbank	54_36p	+1	validated	nonsense	c.679	p.R227*	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
HOOK3	84376	genome.wustl.edu	36	8	42942444	42942444	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2978-03A-01D-0739-09	TCGA-AB-2978-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	8	42942444	42942444	C	G	SNP	HOOK3	NM_032410	human	genbank	54_36p	+1	validated	missense	c.1052	p.T351S	1.000	HMMPfam_HOOK	HMMPfam_HOOK	-	no_errors
NRAS	4893	genome.wustl.edu	36	1	115058052	115058052	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2978-03A-01D-0739-09	TCGA-AB-2978-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	115058052	115058052	T	G	SNP	NRAS	NM_002524	human	genbank	54_36p	-1	reviewed	missense	c.182	p.Q61P	1.000	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DOCK9	23348	genome.wustl.edu	36	13	98255269	98255269	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2978-03A-01D-0739-09	TCGA-AB-2978-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	13	98255269	98255269	G	A	SNP	DOCK9	NM_015296	human	genbank	54_36p	-1	validated	missense	c.5755	p.R1919C	1.000	HMMPfam_Ded_cyto	HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ded_cyto,superfamily_PH domain-like	-	no_errors
PXDNL	137902	genome.wustl.edu	36	8	52484186	52484186	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2978-03A-01D-0739-09	TCGA-AB-2978-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	8	52484186	52484186	C	T	SNP	PXDNL	NM_144651	human	genbank	54_36p	-1	validated	missense	c.2551	p.D851N	0.996	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases	HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_LRR_1,HMMPfam_An_peroxidase,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Heme-dependent peroxidases,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
U2AF1L4	199746	genome.wustl.edu	36	19	40926605	40926605	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2978-03A-01D-0739-09	TCGA-AB-2978-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	40926605	40926605	G	T	SNP	U2AF1L4	NM_144987	human	genbank	54_36p	-1	validated	nonsense	c.348	p.C116*	0.996	NULL	HMMPfam_zf-CCCH,HMMSmart_RRM_1,superfamily_SSF54928	-	no_errors
OR51L1	119682	genome.wustl.edu	36	11	4977503	4977503	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2978-03A-01D-0739-09	TCGA-AB-2978-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	4977503	4977503	G	A	SNP	OR51L1	NM_001004755	human	genbank	54_36p	+1	provisional	missense	c.715	p.A239T	0.995	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
STAG2	10735	genome.wustl.edu	36	X	123048157	123048157	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2978-03A-01D-0739-09	TCGA-AB-2978-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	123048157	123048157	C	T	SNP	STAG2	NM_001042749	human	genbank	54_36p	+1	validated	nonsense	c.3133	p.R1045*	1.000	superfamily_ARM-type_fold	HMMPfam_STAG,superfamily_ARM-type_fold	-	no_errors
DNAH9	1770	genome.wustl.edu	36	17	11582982	11582982	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2978-03A-01D-0739-09	TCGA-AB-2978-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	17	11582982	11582982	G	A	SNP	DNAH9	NM_001372	human	genbank	54_36p	+1	reviewed	missense	c.5875	p.E1959K	1.000	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SYTL4	94121	genome.wustl.edu	36	X	99822888	99822888	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2978-03A-01D-0739-09	TCGA-AB-2978-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	99822888	99822888	C	T	SNP	SYTL4	NM_080737	human	genbank	54_36p	-1	validated	missense	c.1550	p.R517Q	0.989	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_RPH3A_effector,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger	-	no_errors
ATP6AP2	10159	genome.wustl.edu	36	X	40341789	40341789	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2978-03A-01D-0739-09	TCGA-AB-2978-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	40341789	40341789	C	T	SNP	ATP6AP2	NM_005765	human	genbank	54_36p	+1	reviewed	missense	c.463	p.R155C	1.000	NULL	HMMPfam_Renin_r	-	no_errors
RUNX1	861	genome.wustl.edu	36	21	35153653	35153653	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2978-03A-01D-0739-09	TCGA-AB-2978-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	21	35153653	35153653	G	A	SNP	RUNX1	NM_001754	human	genbank	54_36p	-1	reviewed	nonsense	c.601	p.R201*	1.000	superfamily_p53-like transcription factors,HMMPfam_Runt	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
TET2	54790	genome.wustl.edu	36	4	106402456	106402457	+	Splice_Site	INS	-	-	T			TCGA-AB-2978-03A-01D-0739-09	TCGA-AB-2978-11A-01D-0739-09	-	-			-	-	Verified	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	4	106402456	106402457	0	T	INS	TET2	ENST00000265149	human	ensembl	54_36p	1	known	splice_site_ins	c.450+2_450+1	e3+2	NA	NA	NA	NA	NA
TET2	54790	genome.wustl.edu	36	4	106415662	106415662	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2978-03A-01D-0739-09	TCGA-AB-2978-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	4	106415662	106415662	C	T	SNP	TET2	ENST00000265149	human	ensembl	54_36p	+1	known	nonsense	c.952	p.R318*	0.992	NULL	NULL	-	no_start_codon
OR4H12P	161271	genome.wustl.edu	36	14	19298443	19298443	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2978-03A-01D-0739-09	TCGA-AB-2978-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	14	19298443	19298443	G	A	SNP	OR4H12P	ENST00000316004	human	ensembl	54_36p	+1	known	missense	c.535	p.A179T	0.012	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
