Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
KLK7	5650	genome.wustl.edu	36	19	56172720	56172720	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2992-03A-01D-0739-09	TCGA-AB-2992-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	56172720	56172720	G	A	SNP	KLK7	NM_005046	human	genbank	54_36p	-1	reviewed	nonsense	c.646	p.Q216*	0.616	HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases	HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2992-03A-01D-0739-09	TCGA-AB-2992-11A-01D-0739-09	-	-			-	-	Verified	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
RPL9	6133	genome.wustl.edu	36	4	39135654	39135654	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2992-03A-01D-0739-09	TCGA-AB-2992-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	4	39135654	39135654	T	C	SNP	RPL9	NM_000661	human	genbank	54_36p	-1	reviewed	missense	c.205	p.T69A	1.000	superfamily_Ribosomal protein L6,HMMPfam_Ribosomal_L6	superfamily_Ribosomal protein L6,HMMPfam_Ribosomal_L6,PatternScan_RIBOSOMAL_L6_2	-	no_errors
SLC24A3	57419	genome.wustl.edu	36	20	19610539	19610539	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2992-03A-01D-0739-09	TCGA-AB-2992-11A-01D-0739-09	A	A			A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	20	19610539	19610539	A	G	SNP	SLC24A3	NM_020689	human	genbank	54_36p	+1	validated	missense	c.805	p.T269A	0.998	NULL	HMMPfam_Na_Ca_ex	-	no_errors
PARP2	10038	genome.wustl.edu	36	14	19888609	19888609	+	Nonsense_Mutation	SNP	A	A	T			TCGA-AB-2992-03A-01D-0739-09	TCGA-AB-2992-11A-01D-0739-09	A	A			A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	14	19888609	19888609	A	T	SNP	PARP2	NM_005484	human	genbank	54_36p	+1	reviewed	nonsense	c.448	p.R150*	1.000	HMMPfam_WGR,HMMSmart_SM00773	HMMPfam_WGR,HMMSmart_SM00773,HMMPfam_PARP_reg,superfamily_Domain of poly(ADP-ribose) polymerase,HMMPfam_PARP,superfamily_ADP-ribosylation,PatternScan_CASPASE_HIS,PatternScan_CPSASE_2	-	no_errors
IDH1	3417	genome.wustl.edu	36	2	208821358	208821358	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2992-03A-01D-0739-09	TCGA-AB-2992-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	208821358	208821358	G	A	SNP	IDH1	NM_005896	human	genbank	54_36p	-1	reviewed	missense	c.394	p.R132C	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
AGBL1	123624	genome.wustl.edu	36	15	84591961	84591961	+	Silent	SNP	G	G	T			TCGA-AB-2992-03A-01D-0739-09	TCGA-AB-2992-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	15	84591961	84591961	G	T	SNP	AGBL1	NM_152336	human	genbank	54_36p	+1	validated	silent	c.444	p.L148	0.993	superfamily_ARM repeat	superfamily_ARM repeat,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14	-	no_errors
MPND	84954	genome.wustl.edu	36	19	4305113	4305113	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2992-03A-01D-0739-09	TCGA-AB-2992-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	4305113	4305113	C	T	SNP	MPND	NM_032868	human	genbank	54_36p	+1	provisional	missense	c.736	p.R246C	1.000	NULL	superfamily_JAB1/MPN domain,HMMPfam_Mov34	-	no_errors
AMOT	154796	genome.wustl.edu	36	X	111945310	111945310	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2992-03A-01D-0739-09	TCGA-AB-2992-11A-01D-0739-09	A	A			A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	111945310	111945310	A	T	SNP	AMOT	NM_133265	human	genbank	54_36p	-1	reviewed	missense	c.97	p.S33T	0.996	NULL	NULL	-	no_errors
